The complete chloroplast genome of Porella gracillima Mitt. (Porellaceae) and phylogenetic relationships to other bryophytes

References

• Bakalin VA, Klimova KG. 2019. Porellaceae (Hepaticae) in the Russian far East. Bot Pac. 8(1):105–131. doi:10.17581/bp.2019.08110.
   Google Scholar
• Bum HM, Kim HK, Kim NS, Kwon WC, Park JS. 2020. The complete chloroplast genome of Douinia plicata (Lindb.) Konstant. & Vilnet (Scapaniaceae, Jungermanniales). Mitochondrial DNA B Resour. 5(3):3698–3700. doi:10.1080/23802359.2020.1832599.
   PubMedGoogle Scholar
• Bum HM. 2023. Taxonomy of the genus Porella (Porellaceae, Marchantiophyta) in Korea Peninsula [Ph.D. dissertation]. Jeonju: Chonbuk National University. (in Korean).
   Google Scholar
• Choi SS, Kwon W, Park J. 2020. The complete chloroplast genome of Scapania ampliata Steph., 1897 (Scapaniaceae, Jungermanniales). Mitochondrial DNA B Resour. 5(3):2890–2892. doi:10.1080/23802359.2020.1791011.
   PubMed Web of Science ®Google Scholar
• Dong S, Zhang S, Zhang L, Wu H, Goffinet B, Liu Y. 2021. Plastid genomes and phylogenomics of liverworts (Marchantiophyta): conserved genome structure but highest relative plastid substitution rate in land plants. Mol Phylogenet Evol. 161:107171. doi:10.1016/J.YMPEV.2021.107171.
   PubMed Web of Science ®Google Scholar
• Frangedakis E, Guzman-Chavez F, Rebmann M, Markel K, Yu Y, Perraki A, Tse SW, Liu Y, Rever J, Sauret-Gueto S, et al. 2021. Construction of DNA tools for hyperexpression in Marchantia Chloroplasts. ACS Synth Biol. 10(7):1651–1666. doi:10.1021/acssynbio.0c00637.
   PubMed Web of Science ®Google Scholar
• Grosche C, Funk HT, Maier UG, Zauner S. 2012. The chloroplast genome of Pellia endiviifolia: gene content, RNA-editing pattern, and the origin of chloroplast editing. Genome Biol Evol. 4(12):1349–1357. doi:10.1093/GBE/EVS114.
   PubMed Web of Science ®Google Scholar
• Hattori S. 1969. Studies of the Asiatic species of the genus Porella (Hepaticae). II. J Hattori Bot Lab. 32:319–359. https://cir.nii.ac.jp/crid/1571980074947168256.bib?lang=ja.
   Google Scholar
• Hattori S. 1971. Studies of the Asiatic species of the genus Porella (Hepaticae) IV. J Hattori Bot Lab. 34:411–428.
   Google Scholar
• Hattori S, Zhang M. 1985. Porellaceae of Shensi Province. J Jpn Bot. 60:321–326.
   Google Scholar
• Hentschel J, Davison PG, Heinrichs J. 2008. Chapter Sixteen: Porella gracillima Mitt. (Jungermanniidae, Porellaceae) in Tennessee, with an Illustrated Key to the Porella Species of North America North of Mexico. Fieldiana Bot. 47(1):183. doi:10.3158/0015-0746-47.1.183.
   Google Scholar
• Katoh K, Standley DM. 2013. MAFFT Multiple Sequence Alignment Software Version 7: improvements in Performance and Usability. Mol Biol Evol. 30(4):772–780. doi:10.1093/MOLBEV/MST010.
   PubMed Web of Science ®Google Scholar
• Kwon W, Kim Y, Park J. 2019. The complete chloroplast genome sequence of Dumortiera hirsuta (Sw.) Nees (Marchantiophyta, Dumortieraceae). Mitochondrial DNA Part B. 4(1):318–319. doi:10.1080/23802359.2018.1546128.
   Web of Science ®Google Scholar
• Kwon W, Min J, Kim Y, Park J. 2019. The complete chloroplast genome of Reboulia hemisphaerica (L.) Raddi (Aytoniaceae, Marchantiophyta). Mitochondrial DNA Part B. 4(1):1459–1460. doi:10.1080/23802359.2019.1597651.
   Web of Science ®Google Scholar
• Kwon W, Min J, Xi H, Park J. 2019. The complete chloroplast genome of Riccia fluitans L. (Ricciaceae, Marchantiophyta). Mitochondrial DNA Part B. 4(1):1895–1896. doi:10.1080/23802359.2019.1613193.
   Web of Science ®Google Scholar
• Lee SA, Park S-J, Seo H, Kim C, Lee KJ. 2023. Complete chloroplast genome sequence of the liverwort, Porella grandiloba Lindb. (Porellaceae). Mitochondrial DNA B Resour. 8(6):695–698. doi:10.1080/23802359.2023.2225655.
   PubMed Web of Science ®Google Scholar
• Myszczyński K, Bączkiewicz A, Buczkowska K, Ślipiko M, Szczecińska M, Sawicki J. 2017. The extraordinary variation of the organellar genomes of the Aneura pinguis revealed advanced cryptic speciation of the early land plants. Sci Rep. 7(1):9804. doi:10.1038/s41598-017-10434-7.
   PubMed Web of Science ®Google Scholar
• Myszczyński K, Górski P, Ślipiko M, Sawicki J. 2018. Sequencing of organellar genomes of Gymnomitrion concinnatum (Jungermanniales) revealed the first exception in the structure and gene order of evolutionary stable liverworts mitogenomes. BMC Plant Biol. 18(1):321. doi:10.1186/S12870-018-1558-0/FIGURES/6.
   PubMedGoogle Scholar
• Paukszto Ł, Górski P, Krawczyk K, Maździarz M, Szczecińska M, Ślipiko M, Sawicki J. 2023. The organellar genomes of Pellidae (Marchantiophyta): the evidence of cryptic speciation, conflicting phylogenies and extraordinary reduction of mitogenomes in simple thalloid liverwort lineage. Sci Rep. 13(1):8303. doi:10.1038/s41598-023-35269-3.
   PubMed Web of Science ®Google Scholar
• Schattner P, Brooks AN, Lowe TM. 2005. The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs. Nucleic Acids Res. 33(Web Server issue):W686–W689. doi:10.1093/nar/gki366.
   PubMed Web of Science ®Google Scholar
• Trifinopoulos J, Nguyen LT, von Haeseler A, Minh BQ. 2016. W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis. Nucleic Acids Res. 44(W1):W232–W235. doi:10.1093/NAR/GKW256.
   PubMed Web of Science ®Google Scholar
• Wickett NJ, Zhang Y, Hansen SK, Roper JM, Kuehl JV, Plock SA, Wolf PG, Depamphilis CW, Boore JL, Goffinet B. 2008. Functional gene losses occur with minimal size reduction in the plastid genome of the parasitic liverwort Aneura mirabilis. Mol Biol Evol. 25(2):393–401. doi:10.1093/MOLBEV/MSM267.
   PubMed Web of Science ®Google Scholar
• Yu Y, Liu HM, Yang JB, Ma WZ, Pressel S, Wu YH, Schneider H. 2019. Exploring the plastid genome disparity of liverworts. J of Sytematics Evolution. 57(4):382–394. doi:10.1111/JSE.12515/SUPPINFO.
   Google Scholar