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Mitochondrial DNA Part B
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Volume 9, 2024 - Issue 1
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Plastome Report

The complete chloroplast genome sequence of Pinus bhutanica (Pinaceae) and its phylogenetic implications

Shiqi Lva College of Life Sciences and Engineering, Henan University of Urban Construction, Pingdingshan, ChinaView further author information
,
Jiao Chenb Xifeng Experimental Station on Soil and Water Conservation of Yellow River Conservancy Commission, Qingyang, ChinaView further author information
,
Bingbing Lia College of Life Sciences and Engineering, Henan University of Urban Construction, Pingdingshan, ChinaView further author information
,
Taotao Fua College of Life Sciences and Engineering, Henan University of Urban Construction, Pingdingshan, ChinaView further author information
,
Mingliang Songc Conservation Center of Shahe National Wetland Park, Luohe, ChinaView further author information
,
Pengtao Zhangc Conservation Center of Shahe National Wetland Park, Luohe, ChinaView further author information
,
Kang Liuc Conservation Center of Shahe National Wetland Park, Luohe, ChinaView further author information
,
Yixuan Koud Laboratory of Subtropical Biodiversity, Jiangxi Agricultural University, Nanchang, ChinaView further author information
&
Jing Wangd Laboratory of Subtropical Biodiversity, Jiangxi Agricultural University, Nanchang, ChinaCorrespondence[email protected]
View further author information
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Pages 182-185 | Received 28 Jun 2023, Accepted 10 Jan 2024, Published online: 26 Jan 2024

References

  • Baturina OA, Tupikin AE, Goroshkevich SN, Petrova EA, Kabilov MR. 2019. The complete chloroplast genome sequences of Pinus sibirica Du Tour. Mitochondrial DNA B. 4(1):286–287. doi:10.1080/23802359.2018.1542983.
  • Cronn R, Liston A, Parks M, Gernandt DS, Shen R, Mockler T. 2008. Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology. Nucleic Acids Res. 36(19):e122. doi:10.1093/nar/gkn502.
  • Dierckxsens N, Mardulyn P, Smits G. 2016. NOVOPlasty: de novo assembly of organelle genomes from whole genome data. Nucleic Acids Res. 45(4):e18. doi:10.1093/nar/gkw955.
  • Doyle JJ, Doyle JL. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull. 19(1):11–15.
  • Duan RY, Yang LM, Lv T, Wu GL, Huang MY. 2016. The complete chloroplast genome sequence of Pinus dabeshanensis. Conserv Genet Resour. 8(4):395–397. doi:10.1007/s12686-016-0567-2.
  • Farjon A. 1998. World checklist and bibliography of conifers. Kew, Richmond: Royal Botanical Gardens.
  • Gernandt DS, López GG, García SO, Liston A. 2005. Phylogeny and classification of Pinus. Taxon. 54(1):29–42. doi:10.2307/25065300.
  • Gernandt DS, Reséndiz Arias C, Terrazas T, Aguirre Dugua X, Willyard A. 2018. Incorporating fossils into the Pinaceae tree of life. Am J Bot. 105(8):1329–1344. doi:10.1002/ajb2.1139.
  • Jia Y, Milne RI, Zhu J, Gao LM, Zhu GF, Zhao GF, Liu J, Li ZH. 2020. Evolutionary legacy of a forest plantation tree species (Pinus armandii): implications for widespread afforestation. Evol Appl. 13(10):2646–2662. doi:10.1111/eva.13064.
  • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30(4):772–780. doi:10.1093/molbev/mst010.
  • Kress WJ, Wurdack KJ, Zimmer EA, Weigt LA, Janzen DH. 2005. Use of DNA barcodes to identify flowering plants. Proc Natl Acad Sci U S A. 102(23):8369–8374. doi:10.1073/pnas.0503123102.
  • Liu S, Ni Y, Li J, Zhang X, Yang H, Chen H, Liu C. 2023. CPGView: a package for visualizing detailed chloroplast genome structures. Mol Ecol Resour. 23(3):694–704. doi:10.1111/1755-0998.13729.
  • Liu YY, Jin WT, Wei XX, Wang XQ. 2022. Phylotranscriptomics reveals the evolutionary history of subtropical East Asian white pines: further insights into gymnosperm diversification. Mol Phylogenet Evol. 168:107403. doi:10.1016/j.ympev.2022.107403.
  • Mogensen HL. 1996. The hows and whys of cytoplasmic inheritance in seed plants. Am J Bot. 83(3):383–404. doi:10.2307/2446172.
  • Ni Y, Li J, Zhang C, Liu C. 2023. Generating sequencing depth and coverage map for organelle genomes. doi:10.17504/protocols.io.4r3l27jkxg1y/v1.
  • Price MN, Dehal PS, Arkin AP. 2009. FastTree: computing large minimum-evolution trees with profiles instead of a distance matrix. Mol Biol Evol. 26(7):1641–1650. doi:10.1093/molbev/msp077.
  • Qu XJ, Moore MJ, Li DZ, Yi TS. 2019. PGA: a software package for rapid, accurate, and flexible batch annotation of plastomes. Plant Methods. 15(1):50. doi:10.1186/s13007-019-0435-7.
  • Schott T, Schroeder H, Schöning-Stierand K, Kersten B. 2019. The complete chloroplast genome sequence of Pinus cembra L. (Pinaceae). Mitochondrial DNA B Resour. 4(2):4202–4203. doi:10.1080/23802359.2019.1693297.
  • Yang MQ, Du Y, Ling LZ. 2018. Characterization of the complete chloroplast genome of Pinus wangii (Pinaceae), an endangered and endemic species in China. Mitochondrial DNA B Resour. 3(2):1195–1197. doi:10.1080/23802359.2018.1519381.
  • Zeb U, Dong WL, Zhang TT, Wang RN, Shahzad K, Ma XF, Li ZH. 2020. Comparative plastid genomics of Pinus species: insights into sequence variations and phylogenetic relationships. J Syst Evol. 58(2):118–132. doi:10.1111/jse.12492.
  • Zeb U, Wang R, Dong P, Wang N, Zhang T, Lin C, Wang X. 2019. Characterization of the complete chloroplast genome sequence of Pinus pumila (Pinaceae). Mitochondrial DNA B. 4(1):290–291. doi:10.1080/23802359.2018.1542985.
  • Zhu A, Guo W, Gupta S, Fan W, Mower JP. 2016. Evolutionary dynamics of the plastid inverted repeat: the effects of expansion, contraction, and loss on substitution rates. New Phytol. 209(4):1747–1756. doi:10.1111/nph.13743.

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