An evaluation of the suitability of COI and COII gene variation for reconstructing the phylogeny of, and identifying cryptic species in, anopheline mosquitoes (Diptera Culicidae)

References

• Baimai V, Rattanarithikul R, Kijchalao U, The hyrcanus group. 1993. Metaphase karyotypes of Anopheles of Thailand and Southeast Asia: I. J Amer Mosq Control Assoc. 9:59–67.
   PubMed Web of Science ®Google Scholar
• Besansky NJ, Krzywinski J, Lehmann T, Simard F, Kern M, Mukabayire O, Fontenille D, Touré Y, and Sagnon NF. 2003. Semipermeable species boundaries between Anopheles gambiae and An. arabiensis: evidence from mitochondrial sequnce variation. Proc Natl Acad Sci USA. 100:10818–10823.
   PubMed Web of Science ®Google Scholar
• Bourk BP, Nagaki SS, Bergo ES, Cardoso JC, Sallum MAM. 2011. Molecular phylogeny of the Myzorhynchella section of Anopheles (Nyssorhynchus) (Diptera: Culicidae): genetic support for recently described and resurrected species. Mem Inst Oswaldo Cruz, Rio De Janeiro. 106:705–715.
   PubMed Web of Science ®Google Scholar
• Burns J, Janzen D, Hajibabaei M, Hallwachs W, Hebert P. 2007. DNA barcodes and cryptic species of skipper butterflies in the genus Perichares in Area de Conservacion Guanacaste, Costa Rica. Proc Natl Acad Sci USA. 105:6350–6355.
   Web of Science ®Google Scholar
• Chen B, Butlin RK, Pedro PM, Wang XZ, Harbach RE. 2006. Molecular variation systematics and distribution of the Anopheles fluviatilis complex in southern Asia. Med Vet Entomol. 20:33–43.
   PubMed Web of Science ®Google Scholar
• Choochote W. 2009. Evidence to support karyotypic variation of the mosquito, Anopheles peditaeniatus in Thailand. J Insect Sci. 11:10.
   Web of Science ®Google Scholar
• Choochote W, Jitpakdi A, Rongsriyam Y, Komalamisra N, Pitasawat B, Palakul K. 1998. Isoenzyme study and hybridization of two strains of Anopheles sinensis (Diptera: Culicidae) in northern Thailand. Southeast Asian. J Trop Med Publ Hlth. 29:841–848.
   PubMedGoogle Scholar
• Collucci E, Sallum MAM. 2003. Phylogenetic analysis of the subgenus Kerteszia of Anopheles (Diptera: Culicidae: Anophelinae) based on morphological characters. Insect Systemat Evol. 34:361–372.
   Web of Science ®Google Scholar
• Collucci E, Sallum MAM. 2007. Cladistic analysis of the subgenus Anopheles (Anopheles) Meigen (Diptera: Culicidae) based on morphological characters. Memórias Do Instituto Oswaldo Cruz. 102:277–291.
   PubMed Web of Science ®Google Scholar
• Cywinska A, Hunter F, PDN H. 2006. Identifying Canadian mosquito species through DNA barcodes. Med Vet Entomol. 20:413–424.
   PubMed Web of Science ®Google Scholar
• Dassanayake RS, Gunawardene YI, Silva BD. 2008. ITS-2 secondary structures and phylogeny of Anopheles culicifacies species. Bioinformation. 2:456–460.
   PubMedGoogle Scholar
• Djadid ND, Gholizadeh S, Tafsiri E, Romi R, Gordeev M, Zakeri S. 2007. Molecular identification of palearctic members of Anopheles maculipennis in northern Iran. Malar J. 6:6.
   PubMed Web of Science ®Google Scholar
• Djadid ND, Jazayeri H, Gholizadeh S, Rad Sh P, Zakeri S. 2009. First record of a new member of Anopheles hyrcanus group from Iran: molecular identification, diagnosis, phylogeny, status of kdr resistance and plasmodium infection. J Med Entomol. 46:1084–1093.
   PubMed Web of Science ®Google Scholar
• Donelly MJ, Pinto J, Girad R, Besansky NJ, Lehman T. 2004. Revising the role of introgression vs shared ancestral polymorphisms as key processes shaping genetic diversity in the recently separated sibling species of the Anopheles gambiae complex. Heredity. 92:61–68.
   PubMed Web of Science ®Google Scholar
• Elias M, Hill RI, Willmott KR, Dasmahapatra KK, Brower AVZ, Mallet J, Jiggins CD. 2007. Limited performance of DNA barcoding in a diverse community of tropical butterflies. Proc Biol Sci. 274:2881–2889.
   PubMed Web of Science ®Google Scholar
• Foley DH, Bryan JH, Yeates D, Saul A. 1998. Evolution and systematics of Anopheles: insights from a molecular phylogeny of Australasian mosquitoes. Mol Phylogenet Evol. 9:262–275.
   PubMed Web of Science ®Google Scholar
• Gao Q, Beebe N, Cooper R. 2004. Molecular identification of the malaria vectors Anopheles anthropophagus and Anopheles sinensis (Diptera: Culicidae) in central China using polymerase chain reaction and appraisal of their position within the hyrcanus group. J Med Entomol. 41:5–11.
   PubMed Web of Science ®Google Scholar
• Gordeev MI, Bezzhonova OV, Goriacheva S, EV, II Zvantsov AB, Mamedov S, Mutdalibov N, Gasymov E, Ezhov MN. 2010. Molecular genetic analysis of malaria mosquitoes of the Anopheles maculipennis (Diptera, Culicidae) complex in Azerbaijan. Med Parazitol. 4:43–45.
   Google Scholar
• Harbach R. 2004. The classification of genus Anopheles (Diptera: Culicidae): a working hypothesis of phylogenetic relationships. Bull Entomol Res. 94:537–553.
   PubMed Web of Science ®Google Scholar
• Harbach RE. 2007. The Culicidae (Diptera): a review of taxonomy, classification and phylogeny. Zootaxa. 1668:591–638.
   Google Scholar
• Harbach RE, Kitching IJ. 2005. Reconsideration of anopheline phylogeny (Diptera: Culicidae: Anophelinae) based on morphological data. Syst Biodivers. 3:345–374.
   Web of Science ®Google Scholar
• Hebert P, Cywinska A, Ball S, deWaard J. 2003a. Biological identifications through DNA barcodes. Proc Biol Sci. 270:313–321.
   PubMed Web of Science ®Google Scholar
• Hebert P, Penton 2004b. Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator. Proc Natl Acad Sci USA. 101:14812–14817.
   PubMed Web of Science ®Google Scholar
• Hillis DM. 1996. Inferring complex phylogenies. Nature. 383:130–131.
   PubMed Web of Science ®Google Scholar
• Huang ZH, Wang JF. 2001. Cloning and sequencing of cytochrome c oxidase II(COII) gene of three species of mosquitoes. Zhongguo Ji Sheng Chong Xue Yu Ji Sheng Chong Bing Za Zhi. 19:90–92
   PubMedGoogle Scholar
• Huelsenbeck JP, Ronquist F. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics. 17:754–755.
   PubMed Web of Science ®Google Scholar
• Jambulingam P, Sebason S, Vijayan VA, Krishnamoorthy K, Gunasekaran K, et al. 1984. Density and biting behaviour of Anopheles culicifacies Giles in Rameshwaram Island (Tamil Nadu). Indian J Med Res. 80:47–50.
   PubMed Web of Science ®Google Scholar
• Joshi D, Choochote W, Min GS. 2009. Short report: natural hybrid between Anopheles kleini and Anopheles sinensis. Am J Trop Med Hyg. 81:1020–1022.
   PubMed Web of Science ®Google Scholar
• Joshi H, Vasantha K, Subbarao SK, Sharma VP. 1988. Host feeding patterns of Anopheles culicifacies species A and B. J Am Mosq Control Assoc. 4:248–251.
   PubMed Web of Science ®Google Scholar
• Kimura M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol. 16:111–120.
   PubMed Web of Science ®Google Scholar
• Knight K, Stone A. 1977. A catalog of the mosquitoes of the world. Baltimore (MD): The Thomas Say Foundation.
   Google Scholar
• Krzywinski J, Wilkerson RC, Besansky N. 2001a. Evolution of mitochondrial and ribosomal gene sequences in Anophelinae (Diptera: Culicidae): implications for phylogeny reconstruction. Mol Phylogenet Evol. 18:479–487.
   PubMed Web of Science ®Google Scholar
• Krzywinski J, Wilkerson RC, Besansky N. 2001b. Toward understanding Anophelinae (Diptera, Culicidae) phylogeny: insights from nuclear single copy genes and the weight of evidence. Syst Biol. 50:540–556.
   PubMed Web of Science ®Google Scholar
• Kumar N, Rajavel A, Natarajan R, Jambulingam P. 2007. DNA Barcodes can distinguish species of Indian mosquitoes (Diptera:Culicidae). J Med Entomol. 44:1–7.
   PubMed Web of Science ®Google Scholar
• Lu B. 1997. Fauna Sinica, Insecta (Vol.9), Diptera: Culicidae I, II. Beijing (China): Science Press.
   Google Scholar
• Lunt DH, Zhang DX, Szymura JM, Hewitt GM. 1996. The insect cytochrome oxidase I gene: evolutionary patterns and conserved primers for phylogenetic studies. Insect Mol Biol. 5:153–165.
   PubMed Web of Science ®Google Scholar
• Ma Y, Li S, Xu J. 2006. Molecular identification and phylogeny of the maculatus group of Anopheles mosquitoes (Diptera: Culicidae) based on nuclear and mitochondrial DNA sequences. Acta Tropica. 99:272–280.
   PubMed Web of Science ®Google Scholar
• Ma Y, Xu J. 2005. The Hyrcanus group of Anopheles (Anopheles) in China (Diptera: Culicidae): species discrimination and phylogenetic relationships inferred by ribosomal DNA internal transcribed spacer 2 sequences. J Med Entomol. 42:610–619.
   PubMed Web of Science ®Google Scholar
• Mam s, Foster PG, Li C, Sithiprasasna R, Wilkerson RC. 2007. Phylogeny of the Leucosphyrus group of Anopheles (Cellia) (Diptera: Culicidae) based on mitochondrial gene sequences. Ann Entomol Soc Am. 100:27–35.
   Web of Science ®Google Scholar
• Min GS, Choochote W, Jitpakdi A, Kim SJ, Kim W, Jung J, Junkum A. 2002. Intraspecific hybridization of Anopheles sinensis (Diptera: Culicidae) strains from Thailand and Korea. Mol Cells. 14:198–204.
   PubMed Web of Science ®Google Scholar
• Mohanty A, Swain S, Kar SK, Hazra RK. 2009. Analysis of the phylogenetic relationship of Anopheles species, subgenus Cellia (Diptera: Culicidae) and using it to define the relationship of morphologically similar species. Infect Genet Evol. 9:1204–1224.
   PubMed Web of Science ®Google Scholar
• Monaghan M, Balke M, Gregory T, Vogler A. 2005. DNA-based species delineation in tropical beetles using mitochondrial and nuclear markers. Phil Trams R Soc B. 360:925–933.
   Web of Science ®Google Scholar
• Naddaf SR, Razavi MR, Bahramali G. 2010. Molecular variation and distribution of Anopheles fluviatilis (Diptera: Culicidae) complex in Iran. Korean J Parasitol. 48:231–236.
   PubMed Web of Science ®Google Scholar
• Nanda N, Joshi H, Subbarao SK, Yadav RS, Shukla RP, Dua VK, Sharma VP. 1996. Anopheles fluviatilis complex: host feeding patterns of species S, T, and U. J Am Mosq Control Assoc. 12:147–149.
   PubMed Web of Science ®Google Scholar
• Oshaghi MA, Sedaghat MM, Vatandoost H. 2003. Molecular characterization of the Anopheles maculipennis complex in the Islamic Republic of Iran. East Mediter Health J. 9:659–666.
   PubMedGoogle Scholar
• Paredes-Esquivel C, Harbach RE, Townson H. 2011. Molecular taxonomy of members of the Anopheles hyrcanus group from Thailand and Indonesia. Med Vet Entomol. 25:348–352.
   PubMed Web of Science ®Google Scholar
• Park MH W., Choochote SJK, 2008b. Nonreproductive isolation among four allopatric strains of Anopheles sinensis in Asia. J Am Mosq Control Assoc. 24:489–495.
   PubMed Web of Science ®Google Scholar
• Poncon N, Toty C, Kengne P, Alten B, Fontenille D. 2008. Molecular evidence for similarity between Anopheles hyrcanus (Diptera: Culicidae) and Anopheles pseudopictus (Diptera: Culicidae), sympatric potential vectors of malaria in France. J Med Entomol. 45:576–580.
   PubMed Web of Science ®Google Scholar
• Posada D, Crandall KA. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics. 14:817–818.
   PubMed Web of Science ®Google Scholar
• Rao TR. 1984. The anophelines of India. Delhi (India): Malaria Research Centre (ICMR). pp. 518.
   Google Scholar
• Richard C, Wp G, cLMam s. 2005. Molecular phylogeny of neotropical Anopheles (Nyssorhynchus) albitarsis species complex (Diptera: Culicidae). Systematics. 98:918–925.
   Google Scholar
• Rueda LM. 2008. Global diversity of mosquitoes (Insecta: Diptera: Culicidae) in freshwater. Hydrobiologia. 595:477–487.
   Web of Science ®Google Scholar
• Rwegoshora RT, Sharpe RG, Baisley KJ. 2002. Biting behavior and seasonal variation in the abundance of Anopheles minimus species A and C in Thailand. Southeast Asian J Trop Med Public Health. 33:694–701.
   PubMedGoogle Scholar
• Shin E, Hong H. 2001. A new synonym of Anopheles (Anopheles) pullus Yamada, 1937-AA yatsushiroensis Miyazaki, 1951. Kor J Entomol. 31:1–5.
   Google Scholar
• Shimodaira H, Hasegawa M. 1999. Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol Biol Evol. 16:1114–1116.
   Web of Science ®Google Scholar
• Sallum MAM, Schultz TR, Foster PG, Aronstein K, Wirtz RA, Wilkerson RC. 2002. Phylogeny of Anophelinae (Diptera: Culicidae) based on nuclear ribosomal and mitochondrial DNA sequences. Syst Entomol. 27:361–382.
   Web of Science ®Google Scholar
• Sallum MAM, Schultz TR, Wilkerson RC. 2000. Phylogeny of Anophelinae (Diptera: Culicidae) based on morphological characters. Ann Entomol Soc Am. 93:745–775.
   Web of Science ®Google Scholar
• Swain S, Mohanty A, Tripathy HK, Mahapatra N, Kar SK, Hazra RK. 2010. Molecular identification and phylogeny of Myzomyia and Neocellia series of Anopheles subgenus Cellia (Diptera: Culicidae). Infect Genet Evol. 10:931–939.
   PubMed Web of Science ®Google Scholar
• Swofford DL. 2004. PAUP*: phylogenetic analysis using parsimony (*and other methods). Sunderland (MA): Sinauer.
   Google Scholar
• Thompson J, Gibson T, Plewniak F, Jeanmougin F, Higgins D. 1997. The clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 24:4876–4882.
   Web of Science ®Google Scholar
• Wang G, Li C, Guo X, Xing D, Dong Y, Wang Z, Zhang Y, Liu M, Zheng Z, Zhang H, Zhu X, Wu Z, Zhao T. 2012. Identifying the main mosquito species in China based on DNA barcoding. PLoS One. 7:e47051.
   PubMed Web of Science ®Google Scholar
• Walton C, Handley JM, Collins FH, Baimai V, Harbach RE, Deesin V, Butli RK. 2001. Genetic population structure and introgression in Anopheles dirus mosquitoes in South-east Asia. Mol Ecol. 10:569–580.
   PubMed Web of Science ®Google Scholar