Publication Cover
Mitochondrial DNA Part A
DNA Mapping, Sequencing, and Analysis
Volume 28, 2017 - Issue 6
222
Views
6
CrossRef citations to date
0
Altmetric
Research Article

Taxonomic confirmation of mud crab species (genus Scylla) in Bangladesh by nuclear and mitochondrial DNA markers

, , , &
Pages 935-940 | Received 03 May 2016, Accepted 15 Jul 2016, Published online: 08 Sep 2016

References

  • Balasubramanian CP, Cubelio SS, Mohanlal DL, Ponniah AG, Kumar R, Bineesh KK, Ravichandran P, Gopalakrishnan A, Mandal A, Jena JK. 2016. DNA sequence information resolves taxonomic ambiguity of the common mud crab species (Genus Scylla) in Indian waters. Mitochondr DNA. 27:270–275.
  • Baldwin JD, Bass AL, Bowen BW, Clark WH. Jr. 1998. Molecular phylogeny and biogeography of the marine shrimp Penaeus. Mol Phylogenet Evol. 10:399–407.
  • Begum M, Shah MMR, Mamun AA, Alam MJ. 2009. Comparative study of mud crab (Scylla serrata) fattening practices between two different systems in Bangladesh. J Bangladesh Agr Univ. 7:151–156.
  • Blouin MS. 2002. Molecular prospecting for cryptic species of nematodes: mitochondrial DNA versus internal transcribed spacer. Int J Parasitol. 32:527–531.
  • Bucklin A, Frost BW, Kocher TD. 1992. DNA sequence variation of the mitochondrial 16S rRNA in Calanus (Copepoda: Calanoida): intraspecific and interspecific patterns. Mol Mar Biol Biotechnol. 1:397–407.
  • Chantarasri S. 1994. Report on Fisheries Resource Management for the Sundarbans Reserved Forest. UNDP/FAO Project BGD/84/056, Khulna, Bangladesh, p. 172.
  • Chu KH, Tong JG, Chan TY. 1999. Mitochondrial cytochrome oxidase I sequence divergence in some Chinese species of Charybdis (Crustacea: Decapoda: Portunidae). Biochem Syst Ecol. 27:461–468.
  • Chu KH, Li CP, Ho HY. 2001. The first internal transcribed spacer (ITS-1) of ribosomal DNA as a molecular marker for phylogenetic and population analyses in crustacea. Mar Biotechnol. 3:355–361.
  • Clary DO, Wolstenholme DR. 1985. The mitochondrial DNA molecular of Drosophila yakuba: nucleotide sequence, gene organization, and genetic code. J Mol Evol. 22:252–271.
  • Dana JD. 1852. Crustacea. In: United States Exploring Expedition during the years 1838–1842, under the Command of Charels Wilkes. Philadelphia: USN; 13, p. 1–685.
  • DoF. (2011). Annual report published by the Department of Forest, Ministry of Forest and Environment, Governments of the People’s Republic of Bangladesh.
  • D'Onofrio G, Jabbari K, Musto H, Alvarez-Valin F, Cruveiller S, Bernardi G. 1999. Evolutionary genomics of vertebrates and its implications. Ann NY Acad Sci. 870:81–94.
  • Estampador EP. 1949. Studies on Scylla (Crustacea: Portunidae). I. Revision of the genus. Philipp J Sci. 78:95–108.
  • Fabricius JC. 1798. Supplementatione entomologiae systematicae. Hafniae, p. 1–572.
  • Ferdoushi Z, Xlang–guo Z. 2010. Economic analysis of traditional mud crab (Scylla sp.) fattening in Bangladesh. Mar Resour Aquac. 1:5–13.
  • Ferdoushi Z, Xlang–guo Z. 2012. Mud Crab (Scylla serrata) Fattening in Bangladesh: Present Status and Future Prospects. Bangladesh Fisheries Research Forum [Internet]. Available from: http://bfrf.org/site/site/wp-content/uploads/2014/12/AFRB-I-Chapter-13.pdf [last accessed 12 June 2014].
  • Fernandez A, Garcia T, Asensio L, Rodriguez MA. Gonzalez I, Hernandez PE, Martin R. 2001. PCR-RFLP analysis of the internal transcribed spacer (ITS) region for identification of 3 clam species. J Food Sci. 66:657–661.
  • Forskal P. 1775. Descriptiones animalium avium, amphibiorum, piscium, insectorum, vermium; quæ in itinere orientali observavit Petrus Forskal, 1-19, I-XXXIV, 1–164 pp, Post mortem auctoris edidit Carsten Niebuhr. Hauniae.
  • Fushimi H. 1983. Stock enhancement trial of the mud crab in the Hamana-ko lake. In: Oshima Y, editor. Tsukuru Gyogyou. Tokyo: Shigen-kyoukai, p. 652–658.
  • Fuseya R, Watanabe S. 1996. Genetic variability in the mud crab genus Scylla (Brachyura: Portunidae). Fish Sci. 62:705–709.
  • de Haan W. 1883. Crustacea. In: von Siebold PF, editor. Fauna Japonica sive Descriptio Animalium, quae in itinere per Japoniam, jussu et Auspiciis Superiorum, qui summum in India Batava Imperium Tenent, Suscepto, Annis 1825–1830 Collegit, Notis, Observationibus et Adumbrationibus Illustravit. P i-xvii, i-xxxi, ix-xvi, 1-243, A-Q, Tab. 2. Lugduni-Batavorum, Amstelodami, Leiden.
  • Hall T. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acid S. 41:95–98.
  • Hijmans RJL, Guarino C, Bussink P, Mathur M, Cruz I, Barrentes Rojas E. (2004). DIVA-GIS. Vsn. 5.0. A geographic information system for the analysis of species distribution data. Manual [Internet]. Available from: http://www.diva-gis.org
  • Hossain MN, Ahmed ATA. 2006. Crafts and gears used in catching mud crab, Scylla olivacea (Herbst) in Bangladesh. J Asiatic Soci Bangladesh. 32:1–10.
  • Imai H, Cheng JH, Hamasaki K, Numachi KI. 2004. Identification of four mud crab species (genus Scylla) using ITS-1 and 16S rDNA markers. Aquat Living Resour. 17:31–34.
  • Jirapunpipat K, Aungtonya C, Watanabe S. 2008. Morphological study and application of multivariate analysis for the mud crab genus Scylla in Klong ngao mangrove Ranong province, Thailand. Phuket Mar Biol Cent Res Bull. 69:7–24.
  • Jirapunpipat K, Yokota M, Watanabe S. 2009. The benefits of species based management of sympatric mud crabs migrating to a common fishing ground. ICES J Mar Sci. 66:470–477.
  • Jørgensena A, Stothardb JR, Madsenc H, Nalugwad A, Nyakaanad S, Rollinson D. 2013. The ITS2 of the genus Bulinus: novel secondary structure among freshwater snails and potential new taxonomic markers. Acta Trop. 128:218–225.
  • Joel DR, Raj PJS. 1983. Taxonomic remarks on two species of the genus Scylla De Haan (Portunidae: Brachyura) from Pulicat Lake. Indian J Fish. 30:13–26.
  • Kathirval M, Srinivasagam S. 1992. Taxonomy of the mud crab, Scylla serrata (Forskal), from India. The mud crab: Report of the seminar on the mud crab culture and trade, Surat Thani, Thailand. p. 127–132.
  • Keenan CP, Davie PJF, Mann DL. 1998. A revision of the genus Scylla de Hann, 1833 (Crustacea: Decapoda: Brachyura: Portunidae). Raffles Bull Zool. 46:217–245.
  • Khan MG, Alam MF. 1992. Mud crab (Scylla serrata) fishery and its bio-economics in Bangladesh: Report of the seminar on the mud crab culture and trade, Surat Thani, Thailand. p. 29–40.
  • Knuckey IA. 1996. Maturity in male mud crabs, Scylla serrata and the use of mating scars as a functional indicator. J Crustac Biol. 16:487–495.
  • Knutsen H, Jorde PE, Andreé C, Stenseth NC. 2003. Fine-scaled geographical population structuring in a highly mobile marine species: the Atlantic cod. Mol Ecol. 12:385–394.
  • Lassalle F, Périan S, Bataillon T, Nesme X, Duret L, Daubin V. 2015. GC-content evolution in bacterial genomes: the biased gene conversion hypothesis expands. PLoS Genet. 11:1–20.
  • Ma LB, Zhang FY, Ma CY, Qiao ZG. 2006. Scylla paramamosain (Estampador) the most common mud crab (genus Scylla) in China: evidence from mtDNA. Aquac Res. 37:1694–1698.
  • Macintosh DJ. 1988. The ecology and physiology of decapods of mangrove swamps. Symp Zool Soc London. 59:315–341.
  • Macintosh DJ, Overton JL, Thu HVT. 2002. Confirmation of two common mud crab species (genus Scylla) in the mangrove ecosystem of the Mekong Delta, Vietnam. Mud crab aquaculture: a practical manual. J Shellfish Res. 21:259–265.
  • Mandal A, Varkey M, Sobhanan SP, Mani AK, Gopalakrishnan A, Kumaran G, Sethuramalingam A, Srinivasan P, Samraj YCT. 2014. Molecular markers reveal only two mud crab species of genus Scylla (Brachyura: Portunidae) in Indian coastal waters. Biochem Genet. 52:338–354.
  • Ogawa CY, Hamasaki K, Dan S, Obata Y, Kitada S. 2012. Species composition, reproduction, and body size of mud crabs, Scylla species., caught in Urado bay, Japan. J Crust Biol. 32:762–768.
  • Overton JL, Macintosh DJ, Thorpe RS. 1997. Multivariate analysis of the mud crab Scylla serrata (Brachyura: Portunidae) from four locations in Southeast Asia. Mar Biol. 128:55–62.
  • Padate VP, Rivonker CU, Anil AC. 2013. A new record of Scylla ovacea (Decapoda, Brachyura, Portunidae) from Goa, Central west coast of India: a comparative diagnosis. Indian J Geo-Mar Sci. 42:82–89.
  • Radhakrishna C, Smuel CT. 1982. Report on the occurrence of one subspecies of Scylla serrata (Forskal) in Cochin backwater. Fish Technol. 19:5–7.
  • Rozas J, Sanchez-Delbarrio JC, Messeguer X, Rozas R. 2003. DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics. 19:2496–2497.
  • Sangthong P, Jondeung A. 2006. Classification of three crab morphs in genus Scylla using morphometric analysis. Kasetsart J Nat Sci. 40:958–970.
  • Saha MR, Rahman MM, Ahmed SU, Rahman S, Pal HK. 2000. Study on the effect of stocking density on brood stock development of mud crab Scylla serrata in brackish water earthen ponds. Pakistan J Biol Sci. 3:389–391.
  • Sarower MG, Aktar N, Mostafa M, Sabbir W, Islam MS. 2012. Some aspects of captive breeding biology of mud crab, Scylla serrate in Bangladesh. J Innov Dev Start. 6:1–6.
  • Sarower MG, Bilkis S, Rauf A, Khanam M, Islam S. 2013. Comparative biochemical composition of natural and fattened mud crab Scylla serrata. J Sci Res. 5:545–553.
  • Serene R. 1952. Les especes du genere Scylla a Nhatrang (Vietnam). Proc Indo-Pacific Fish Council. 3:133–137.
  • Stephenson W, Campbell B. 1960. The Australian Portunids (Crustacea: Portunidae) IV. Remaining genera. Australian J Mar Freshwater Res. 11:73–122.
  • Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. 2013. MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol. 30:2725–2729.
  • Tam YK, Kornfield I. 1998. Phylogenetic relationships of clawed lobster genera (Decapoda: Nephropidae) based on mitochondrial 16S rRNA gene sequences. J Crust Biol. 18:138–146.
  • Tong JG, Chan TY, Chu KH. 2000. A preliminary phylogenetic analysis of Metapenaeopsis (Decapoda: Penaeidae) based on mitochondrial DNA sequences of selected species from the Indo-West Pacific. J Crust Biol. 20:541–549.
  • Trivedi JN, Vachhrajani KD. 2013. Vachhrajani taxonomic account of genus Scylla (de Haan, 1833) from Gujarat State, India with two new records of species. Arthropods. 2:159–171.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.