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Mitochondrial DNA Part A
DNA Mapping, Sequencing, and Analysis
Volume 29, 2018 - Issue 4
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Research Article

Genetic diversity and population structure of Acrossocheilus yunnanensis (Teleostei, Cyprinidae) inferred from four mitochondrial gene sequences

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Pages 606-614 | Received 07 Feb 2017, Accepted 13 May 2017, Published online: 26 May 2017

References

  • Bandelt HJ, Forster P, Röhl A. 1999. Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol. 16:37–48.
  • Beerli P, Felsenstein J. 2001. Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach. Proc Natl Acad Sci USA. 98:4563–4568.
  • Berrebi P, Xavier R, Fang F, Zhang CG. 2006. Population structure and systematics of Opsariichthys bidens (Osteichthyes: Cyprinidae) in south-east China using a new nuclear marker: the introns (EPIC-PCR). Biol J Linn Soc. 87:155–166.
  • Bouckaert R, Heled J, Kühnert D, Vaughan T, Wu C-H, Xie D, Suchard MA, Rambaut A, Drummond AJ. 2014. BEAST 2: a software platform for Bayesian evolutionary analysis. Plos Comput Biol. 10:e1003537
  • Cao L, Zhang E, Zang CX, Cao WX. 2016. Evaluating the status of China’s continental fish and analyzing their causes of endangerment through the red list assessment. Biodiversity Sci. 24:598–609.
  • Cao WX. 2011. Status and conservation tactics of fish resource in the Yangtze River. Fish Sci Technol Jiangxi. 2:1–4.
  • Chen LQ, Wu Q, Zheng SM. 2006. Study on the artificial propagation of Acrossocheilus yunnanensis. Freshwater Fish. 36:43–45.
  • Chu XL, Chen YR. 1989. The fishes of Yunnan, China Part I Cyprinidae. Beijing: Science Press.
  • Ding YW, Peng ZG, Zhang XP, He SP. 2006. Mitochondrial DNA ND4 gene sequences variation of two Pelteobagrus species. Acta Hydrobiol Sin. 30:413–419.
  • Drummond A, Rambaut A, Shapiro B, Pybus O. 2005. Bayesian coalescent inference of past population dynamics from molecular sequences. Mol Biol Evol. 22:1185–1192.
  • Dupanloup I, Schneiderl S, Excoffier L. 2002. A simulated annealing approach to define the genetic structure of populations. Mol Ecol. 11:2571–2581.
  • Excoffier L, Lischer HEL. 2010. Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resour. 10:564–567.
  • Fan Q, He SP. 2014. The pattern of upper and middle Yangtze drainages shapes the genetic structure and diversity of Hemiculter leucisculus revealed by mitochondrial DNA locus. Acta Hydrobiol Sin. 38:627–635.
  • Grant WS, Bowen BW. 1998. Shallow population histories in deep evolutionary lineages of marine fishes: insights from sardines and anchovies and lessons for conservation. J Hered. 89:415–426.
  • Guindon S, Gascuel O. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol. 52:696–704.
  • Huang L. 2006. Impacts of hydraulic works on fish biodiversity in the Yangtze River Valley and counter measures. J Lake Sci. 18:553–556.
  • Huelsenbeck JP, Ronquist F. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics. 17:754–755. MrBayes:
  • Kumar S, Stecher G, Tamura K. 2016. MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol. 33:1870–1874.
  • Li XB, Tang QY, Yu D, Liu HZ. 2016. Genetic diversity and population history of longnose Gudgeon (Saurogobio dabryi) in the upper Yangtze River and Chishui River based on Cytochrome b gene sequences. Chinese J Zool. 51:833–843.
  • Librado P, Rozas J. 2009. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics. 25:1451–1452.
  • Liu JK, Cao WX. 1992. Fish resources of the Yangtze River basin and the tactics for their conservation. Resour Environ Yangtze Valley. 1:17–23.
  • Peng JL, Wang XZ, Wang D, He SP. 2009. Application of DNA barcoding based on the mitochondrial CO Ι gene sequences in classification of Culter (Pisces: Cyprinidae). Acta Hydrobiol Sin. 2:271–276.
  • Posada D, Crandall KA. 1998. MODELTEST: testing the model of DNA substitution. Bioinformatics. 14:817–818.
  • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin J, Higgins DG. 1997. The CLUSTAL X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25:4876–4882.
  • Xiao WH, Zhang YP, Liu HZ. 2001. Molecular systematics of Xenocyprinae (Teleostei: Cyprinidae): taxonomy, biogeography, and coevolution of a special group restricted in East Asia. Mol Phylogenet Evol. 18:163–173.
  • Yang JQ, Tang WQ, Liao TY, Sun Y, Zhou ZC, Han CC, Liu D, Lin HD. 2012. Phylogeographical analysis on Squalidus argentatus recapitulates historical landscapes and drainage evolution on the island of Taiwan and Mainland China. Int J Mol Sci. 13:1405–1425.
  • Yang JX, Chen YR. 1995. The biology and resource utilization of the fishes of Fuxian Lake, Yunnan. Kunming: Yunnan Science and Technology Press.
  • Yu Y, Harris AJ, He XJ. 2010. S-DIVA (statistical dispersal-vicariance analysis): a tool for inferring biogeographic histories. Mol Phylogenet Evol. 56:848–850.
  • Zardoya R, Doadrio I. 1999. Molecular evidence on the evolutionary and biogeographical patterns of European cyprinids. J Mol Evol. 49:227–237.
  • Zheng CY. 1989. The fishes of Pear River. Beijing: Science Press.
  • Zhou LJ, Zhan HX, Wang XW, Tang CL. 2014. Preliminary study on technique for artificial reproduction and fry rearing of Acrossocheilus yunnanensis. Acta Ecol Anim Domastici. 35:78–96.
  • Zhu B, Zheng HT, Qiao Y, Que YF, Chang JB. 2009. Fish stocking program in the Yangtze River. Fish Economy China. 27:74–87.

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