Evidence for panmixia despite barriers to gene flow in the hooked mussel, Ischadium recurvum (Mytilidae; Brachidontinae) along the North American coastline

References

• Abbott RT, Morris PA. 1995. A field guide to shells: Atlantic and Gulf coasts and the West Indies. New York: Houghton Mifflin; p. 17.
   Google Scholar
• Anderson PM, Barnosky CW, Bartlein PJ, Behling PJ, Brubaker L, Cushing EJ, Dodson J, Dworetsky B, Guetter PJ, Harrison SP, et al. 1988. Climatic changes of the last 18,000 years: observations and model simulations. Science. 241:1043–1052.
   PubMed Web of Science ®Google Scholar
• Avise JC. 2000. Phylogeography; the history and formation of species. Cambridge (MA): Harvard University Press.
   Google Scholar
• Avise JC. 1992. Molecular population structure and the biogeographic history of a regional fauna: a case history with lessons for conservation biology. Oikos. 63:62–76.
   Web of Science ®Google Scholar
• Beerli P, Felsenstein J. 1999. Maximum likelihood estimates of migration rates and effective population numbers in two populations using a coalescent approach. Genetics. 152:763–773.
   PubMed Web of Science ®Google Scholar
• Beerli P, Palczewski M. 2010. Unified framework to evaluate panmixia and migration direction among multiple sampling locations. Genetics. 185:313–326.
   PubMed Web of Science ®Google Scholar
• Beerli P. 2009. How to use migrate or why are Markov Chain Monte Carlo programs difficult to use? In: Bertorelle G, Bruford MW, Hauffe HC, Rizzoli A, Vernesi C, editors. Population genetics for animal conservation. Cambridge (UK): Cambridge University Press.
   Google Scholar
• Benzie JAH, Ballment E, Forbes AT, Demetriades T, Sugama K, Haryanti Moria S. 2002. Mitochondrial DNA variation in Indo-Pacific populations of the giant tiger prawn, Penaeus monodon. Mol Ecol. 11:2553–2569.
   PubMed Web of Science ®Google Scholar
• Boehm JT, Waldman J, Robinson JD, Hickerson MJ. 2015. Population genomics reveals seahorses (Hippocampus erectus) of the western Mid-Atlantic coast to be residents rather than vagrants. PLoS One. 10:e0116219.
   PubMed Web of Science ®Google Scholar
• Bowen BW, Avise JC. 1990. Genetic structure of Atlantic and Gulf of Mexico populations of sea bass, menhaden, and sturgeon: influence of zoogeographic factors and life-history patterns. Mar Biol. 107:371–381.
   Web of Science ®Google Scholar
• Brante A, Fernandes M, Viard F. 2012. Phylogeography and biogeography concordance in the marine gastropod Crepipatella dilatate (Calyptraeidae) along the southeastern Pacific coast. J Hered. 103:630–637.
   PubMed Web of Science ®Google Scholar
• Briggs JC, Bowen BW. 2012. A realignment of marine biogeographic provinces with particular reference to fish distributions. J Biogeog. 39:12–30.
   Web of Science ®Google Scholar
• Briggs JC. 1974. Marine zoogeography. New York: McGraw-Hill.
   Google Scholar
• Bucklin A, Steinke D, Blanco-Bercial L. 2011. DNA barcoding of marine metazoa. Ann Rev Mar Sci. 3:471–508.
   PubMed Web of Science ®Google Scholar
• Buhay J. 2009. “COI-like” sequences are becoming problematic in molecular systematics and DNA barcoding studies. J Crustac Biol. 29:96–119.
   Web of Science ®Google Scholar
• Campos B, Romorino L. 1980. Larval and early benthic stages of Brachidontes granulate Bivalvia: Mytilidae. Veliger. 22:277–281.
   Web of Science ®Google Scholar
• Chatti N, Zitari-Chatti R, Attia MH, Khadra YB, Said K. 2012. Very low mitochondrial diversity and genetic homogeneity in the starfish Echinaster sepositus along the Tunisian coast. Biochem Genet. 50:45–51.
   PubMed Web of Science ®Google Scholar
• Darriba D, Taboada GL, Doallo R, Posada D. 2012. jModelTest 2: more models, new heuristics and parallel computing. Nat Methods. 9:772.
   PubMed Web of Science ®Google Scholar
• Drummond AJ, Suchard MA, Xie D, Rambaut A. 2012. Bayesian phylogenetics with BEAUti and the BEAST 1.7. Mol Biol Evol. 29:1969–1973.
   PubMed Web of Science ®Google Scholar
• Fields A, Moore E. 1983. The larval biology of Brachidontes modiolus (Linneaus, 1767) Bivalvia: Mytilidae. Veliger. 26:52–61.
   Web of Science ®Google Scholar
• Fontanella FM. 2016. Mitochondrial DNA panmixia in the little brown seastar Echinaster spinulousus suggests a recent population expansion. Mitochondrial DNA A. 27:4503–4509.
   PubMed Web of Science ®Google Scholar
• Fu XY. 1997. Statistical tests of neutrality of mutations against population growth, hitchhiking, and background selection. Genetics. 147:915–925.
   PubMed Web of Science ®Google Scholar
• Gelman A, Rubin DB. 1992. Inference from iterative simulation using multiple sequences. Stat Sci. 7:457–511.
   Google Scholar
• Gray IE, Cerame-Vivas MJ. 1963. The circulation of surface waters in Raleigh Bay, North Carolina. Limnol Oceanogr. 8:330–337.
   Web of Science ®Google Scholar
• Hare MP, Avise JC. 1998. Population structure in the American oyster as inferred by nuclear gene genealogies. Mol Biol Evol. 15:119–128.
   PubMed Web of Science ®Google Scholar
• Hewitt GM. 1996. Some genetic consequences of ice ages, and their role in divergence and speciation. Biol J Linn Soc. 58:347–356.
   Web of Science ®Google Scholar
• Hewitt GM. 2000. The genetic legacy of the Quaternary ice ages. Nature. 405:907–913.
   PubMed Web of Science ®Google Scholar
• Hodel RGJ, de Souza Cortez MB, Soltis PS, Soltis DE. 2016. Comparative phylogeography of black mangroves (Avicennia germinans) and red mangroves (Rhizophora mangle) in Florida: testing the maritime discontinuity in coastal plants. Am J Bot. 103:730–739.
   PubMed Web of Science ®Google Scholar
• Jones WJ, Quattro JM. 1999. Genetic structure of summer flounder (Paralichthys dentatus) populations north and south of Cape Hatteras. Mar Biol. 133:129–135.
   Web of Science ®Google Scholar
• Kelly DW, MacIsaac HJ, Heath DD. 2006. Vicariance and dispersal effects on phylogeographic structure and speciation in a widespread estuarine invertebrate. Evolution. 60:257–267.
   PubMed Web of Science ®Google Scholar
• Lee T, Foighil Ó. 2004. Hidden Floridian biodiversity: mitochondrial and nuclear gene trees reveal four cryptic species within the scorched mussel, Brachidontes exustus, species complex. Mol Ecol. 13:3527–3542.
   PubMed Web of Science ®Google Scholar
• Luttikhuizen PC, Drent J, Baker AJ. 2003. Disjunct distribution of highly diverged mitochondrial lineage clade and population subdivision in a marine bivalve with pelagic larval dispersal. Mol Ecol. 12:2215–2229.
   PubMed Web of Science ®Google Scholar
• McCartney MA, Burton ML, Lima TG. 2013. Mitochondrial DNA differentiation between populations of black sea bass (Centropristis striata) across Cape Hatteras, North Carolina (USA). J Biogeogr. 40:1386–1398.
   Web of Science ®Google Scholar
• McMille-Jackson AL, Bert TM. 2004. Mitochondrial DNA variation and population genetic structure of the blue crab Callinectes sapidus in the eastern United States. Mar Biol. 145:769–777.
   Web of Science ®Google Scholar
• Morton B. 1988. The population dynamics and reproductive cycle of Brachidontes variabilis (Bivalvia: Mytilidae) in a Hong Kong mangrove. Malacol Rev. 21:109–117.
   Google Scholar
• Nichols RA, Hewitt GM. 1994. The genetic consequences of long distance dispersal during colonization. Heredity. 72:312–317.
   Web of Science ®Google Scholar
• Rambaut A, Suchard MA, Xie D, Drummond AJ. 2014. Tracer v1.6. http://tree.bio.ed.ac.uk/software/tracer
   Google Scholar
• Ramirez-Soriano A, Ramos-Onsins SE, Rozas J, Calafell F, Navarro A. 2008. Statistical power analysis of neutrality tests under demographic expansions, contractions and bottlenecks with recombination. Genetics. 179:555–567.
   PubMed Web of Science ®Google Scholar
• Ronquist F, Heulsenbeck JP. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics. 19:1572–1574.
   PubMed Web of Science ®Google Scholar
• Rozas J, Ferrer-Mata A, Sánchez-DelBarrio JC, Guirao-Rico S, Librado P, Ramos-Onsins SE, Sánchez-Gracia A. 2017. DnaSP 6: DNA sequence polymorphism analysis of large datasets. Mol Biol Evol. 34:3299–3302.
   PubMed Web of Science ®Google Scholar
• Sanchez R, Sepulveda RD, Brante A, Cardenas L. 2011. Spatial pattern of genetic and morphological diversity in the direct developer Acanthina monodon (Gastropoda: Mollusca). Mar Ecol Prog Ser. 434:121–131.
   Web of Science ®Google Scholar
• Schenekar T, Weiss S. 2011. High rate of calculation errors in mismatch distribution analysis results in numerous false inferences of biological importance. Heredity. 107:511–512.
   PubMed Web of Science ®Google Scholar
• Siddall ME, Fontanella FM, Watson SC, Kvist S, Erseus C. 2009. Barcoding bamboozled by bacteria: convergence to metazoan mitochondrial primer targets by marine microbes. Syst Biol. 58:445–451.
   PubMed Web of Science ®Google Scholar
• Stamatakis A. 2014. RAxML Version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. 30:1312–1313.
   PubMed Web of Science ®Google Scholar
• Tajima F. 1989. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics. 123:585–595.
   PubMed Web of Science ®Google Scholar
• Teske PR, Papadopoulos I, Mmonwa KL, Matumba TG, McQaid CD, Barker NP, Beheregaray LB. 2011. Climate-driven genetic divergence of limpets with different life histories across a southeast African marine biogeographic disjunction: different processes, same out-come. Mol Ecol. 20:5025–5041.
   PubMed Web of Science ®Google Scholar
• Teske PR, Winker H, McQuaid CD, Barker NP. 2009. A tropical/subtropical biogeographic disjunction in southeastern Africa separates two evolutionarily significant units of estuarine prawn. Mar Biol. 156:1265–1275.
   Web of Science ®Google Scholar
• Young AM, Torres C, Mack JE, Cunningham CW. 2002. Morphological and genetic evidence for vicariance and refugium in Atlantic and Gulf of Mexico populations of the hermit crab Pagarus longicarpus. Mar Biol. 140:1059–1066.
   Web of Science ®Google Scholar
• Zatcoff MS, Ball AO, Sedberry GR. 2004. Population genetic analysis of red grouper, Epinephelus morio, and scamp, Myteroperca phenax, from the southeastern US Atlantic and Gulf of Mexico. Mar Biol. 144:769–2777.
   Web of Science ®Google Scholar