Mitochondrial DNA diversity and population structure of the ocellate freshwater stingray Potamotrygon motoro (Müller & Henle, 1841) (Myliobatiformes: Potamotrygonidae) in the Colombian Amazon and Orinoco Basins

References

• Albert JS, Lovejoy NR, Crampton WRG. 2006. Miocene tectonism and the separation of cic- and trans- Andean river basin: evidence from Neotropical fishes. J South Am Earth Sci 21:14.
   Web of Science ®Google Scholar
• Allendorf FW, Luikart G, Aitken SN. 2013. Conservation and the genetics of populations. West Sussex (UK): Wiley-Blackwell.
   Google Scholar
• Amaya-Calderón LA. 2016. Estructura poblacional y diversidad genética de la tortuga matamata, Chelus fimbriatus (Schneider, 1783), en las cuencas del Amazonas y el Orinoco: trayectorias evolutivas independientes? Bogota (Colombia): Universidad de los Andes.
   Google Scholar
• Caldas JP, Castro-González E, Puentes V, Rueda M, Lasso C, Duarte LO, Grijalba-Bendeck M, Gómez F, Navia AF, Mejía-Falla PA. 2010. Plan de Acción Nacional para la Conservación y Manejo de de Tiburones, Rayas y Quimeras de Colombia (PAN Tiburones Colombia). Bogota, Colombia: Instituto Colombiano Agropecuario, Secretaria de Agricultura y Pesca de San Andrés Isla, Ministerio de Ambiente, Vivienda y Desarrollo Territorial, Instituto de Investigaciones Marinas y Costeras, Instituto Alexander von Humboldt, Universidad del Magdalena, Universidad Jorge Tadeo Lozano, Pontificia Universidad Javeriana, Fundación Squalus, Fundación Malpelo y otros Ecosistemas Marinos, Conservación Internacional, WWF Colombia; p. 170.
   Google Scholar
• Carvalho MR, Lovejoy NR, Rosa RS. 2003. Family Potamotrygonidae (river stingrays). In: Reis RE, Kullander SO, Ferris CJ, editors. Check list of the freshwater fishes of South and Central America. Porto Alegre (Brazil): Edipucrs.
   Google Scholar
• Castex M, Maciel N, Achenbach GM. 1963. Acerca de la raya fluvial Potamotrygon labradori. Neotropica 9:117–121.
   Google Scholar
• Clement M, Posada D, Crandall KA. 2000. TCS: a computer program to estimate gene genealogies. Mol Ecol 9:1657–1659.
   PubMed Web of Science ®Google Scholar
• Corander J, Marttinen P, Sirén J, Tang J. 2008. Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations. BMC Bioinform 9:539.
   PubMed Web of Science ®Google Scholar
• Cruz VP, Oliveira C, Foresti F. 2012. The genetic dynamics and recent colonization of Southeastern Brazil by stingrays (Chondrichthyes: Potamotrygonidae). Sci Med Fasciculo 3:179–185.
   Google Scholar
• Cruz VP, Vera M, Mendonça FF, Pardo BG, Martinez P, Oliveira C, Foresti F. 2015. First identification of interspecies hybridization in the freshwater stingrays Potamotrygon motoro and P. falkneri (Myliobatiformes, Potamotrygonidae). Conserv Genet 16:241–245.
   Web of Science ®Google Scholar
• Devincenzi GJ, Teague GW. 1942. Ictiofauna del Río Uruguay medio. Anales Del Museo de Historia Nacional de Montevideo (Ser 2) 5:1–100.
   Google Scholar
• Drummond AJ, Ashton B, Buxton S, Cheung M, Coorper A, Heled J, Kearse M, Moir R, Stone-Havas S, Sturrock S. 2010. Geneious v5.1.
   Google Scholar
• Excoffier L, Lischer H. 2010. Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resour 10:564–567.
   PubMed Web of Science ®Google Scholar
• Fisher RA. 1930. The genetical theory of natural selection. Oxford, UK: Oxford University Press.
   Google Scholar
• Frederico RG, Farias IP, Araújo ML, Charvet-Almeida P, Alves-Gomes JA. 2012. Phylogrogrpahy and conservation genetics of the Amazonian freshwater stingray Paratrygon aiereba Muller & Hendle, 1841 (Chondrichthyes: Potamotrygonidae). Neotrop Ichthyol 10:71–80.
   Web of Science ®Google Scholar
• García DA, Lasso CA, Morales-Betancourt MA, Caballero SJ. 2016. Molecular systematics of the freshwater stingrays (Myliobatiformes: Potamotrygonidae) of the Amazon, Orinoco, Magdalena, Essequibo, Caribbean and Maracaibo basins (Colombia-Venezuela): evidence from three mitochondrial genes. Mitochondrial DNA A DNA Mapp Seq Anal 27:4479–4491.
   PubMedGoogle Scholar
• Heist EJ. 2004. Genetics of sharks, skates and rays. In: Carrier JC, Musick JA, Heithaus MR, editors. Biology of sharks and their relatives. New York, USA: CRC Press; p. 471–485.
   Google Scholar
• Hey J, Chung Y, Sethuraman A. 2015. On the occurrence of false positives in tests of migration under an isolation-with-migration model. Mol Ecol 24:5078–5083.
   PubMed Web of Science ®Google Scholar
• Hoorn C, Guerrero J, Sarmiento GA, Lorente MA. 1995. Andean tectonics as a cause for changing drainage patterns in Miocene northern South America. Geology 23:237–240.
   Web of Science ®Google Scholar
• Hughes AR, Inouye BD, Johnson MTJ, Underwood N, Vellend M. 2008. Ecological consequences of genetic diversity. Ecol Lett 11:609–623.
   PubMed Web of Science ®Google Scholar
• Kirk W, Willis S. 2011. The Vaupes Arch and Casiquiare Canal: barriers and passages. In: Albert JS, Reis R, editors. Historical biogeography of neotropical freshwater fishes. Berkeley (CA): University of California Press; p. 388.
   Google Scholar
• Laikre L, Palm S, Ryman N. 2005. Genetic population structure of fishes: implications for coastal zone management. Ambio 34:111–119.
   PubMed Web of Science ®Google Scholar
• Lasso CA, Rosa RS, Sánchez-Duarte PC, Morales-Betancourt MA, Agudelo-Córdoba E. 2013. Rayas de agua dulce (Potamotrygonidae) de Suramérica. Parte I. Colombia, Venezuela, Ecuador, Perú, Brasil, Guyana, Surinam y Guayana Francesa: diversidad, bioecología, uso y conservación. Vol.IX. Bogota (Colombia): Instituto de Investigación de Rescursos Biológicos Alexander von Humboldt (IAvH).
   Google Scholar
• Lasso CA, Sánchez-Duarte P. 2012. Potamotrygon schroederi. In: Mojica JI, Usma JS, Alvarez-León R, editors. Libro rojo de peces dulceacuícolas de Colombia. Bogota (Colombia): Instituto de Investigación de Recursos Biológicos Alexander von Humboldt, Instituto de Ciencias Naturales de la Universidad Nacional de Colombia, WWF Colombia, Universidad de Manizales.
   Google Scholar
• Loboda TS. 2010. Revisao taxonomica e morfologica de Potamotrygon motoro (Muller & Henle, 1841) na bacia Amazonica (Chondrichthyes: Myliobatiformes: Potamotrygonidae). Sao Paulo (Brazil): Universidad de Sao Paulo.
   Google Scholar
• Loboda TS, Carvalho M. 2013. Systematic revision of the Potamotrygon motoro (Muller & Henle, 1841) species complex in the Paraná-Paraguay basin, with description of two ocellated species (Chondrichtyes: Myliobatiformes: Potamotrygonidae). Neotrop Ichthyol 11:693–737.
   Web of Science ®Google Scholar
• Lovejoy NR, Berminghan E, Martin AP. 1998. Marine incursions into South America. Nature 369:421–422.
   Google Scholar
• Lovejoy NR, de Araujo MLG. 2000. Molecular systematics, biogeography and population structure of Neotropical freshwater needlefishesof the genus Potamorrhaphis. Mol Ecol 9:259–268.
   PubMed Web of Science ®Google Scholar
• Maddison DR, Maddison WP. 2000. MacClade: analysis of phylogeny and character evolution Sunderland. MA, USA: Sinauer.
   Google Scholar
• Martin RA. 2005. Conservation of freshwater and euryhaline elasmobranchs: a review. J Mar Biol Assoc UK 85:1049–1073.
   Web of Science ®Google Scholar
• Mendoca FF, Oliveira C, Burgess G, Coelho R, Piercy A, Gadig OBF, Foresti F. 2009. Species delimitation in sharpnose sharks (genus Rhizoprionodon) in the western Atlantic Ocean using mitochondrial DNA. Conserv Genet 12:193–200.
   Web of Science ®Google Scholar
• Olivares AM, Hrbek T, Escobar MD, Caballero S. 2013. Population structure of the black arowana (Osteoglossum ferreirai) in Brazil and Colombia: implications for its management. Conserv Genet 14:695–703.
   Web of Science ®Google Scholar
• Palumbi SR. 1996. Nucleic acids II: the polymerase chain reaction. In: Hillis D, Moritz C, Mable BK, editors. Molecular systematics. Suderland (MA): Sinauer Associates.
   Google Scholar
• Pinho C, Hey J. 2010. Divergence with gene flow: models and data. Annu Rev Ecol Evol Syst 41:215–230.
   Web of Science ®Google Scholar
• Piorski NM, Sanches A, Carvalho-Costa LF, Hatanaka T, Carrillo-Avila M, Freitas PD, Galetti Jr PM. 2008. Contribution of conservation genetics in assessing neotropical freshwater fish biodiversity. Braz J Biol 68:1039–1050.
   PubMed Web of Science ®Google Scholar
• Port AL, Lavery S. 2012. Population structure and phylogeogrpahy pf the short-tailed stingray Dasyatis brevicauda (Hutton 1875), in the Southern Hemisphere. J Hered 103:174–185.
   PubMedGoogle Scholar
• Rosa R, Charvet-Almeida P, Diban CC. 2010. Biology of the South American Potamotrygonid stingrays. In: Carrier CC, Musick JA, Heithaus MR, editors. Sharks and their relatives II: Biodiversity, adaptive physiology and conservation. New York: CRC Press; p. 241–281.
   Google Scholar
• Rosa RS. 1985. A systematic revision of the South American freshwater stingrays (Chondrichthyes:Potamotrygonidae). Williamsburg (VA): College of William and Mary.
   Google Scholar
• Schluessel S, Broderick D, Collin SO, Ovenden JR. 2010. Evidence for extensive population structure in the white-spotted eagle ray within the Indo-Pacific inferred from mitochondrial gene sequences. J Zool 281:46–55.
   Web of Science ®Google Scholar
• Stokes MF, Goldberg SM, Perron JT. 2018. Ongoing river capture in the Amazon. Geophys Res Lett 45:5545–5552.
   Web of Science ®Google Scholar
• Toffoli D, Hrbek T, Araújo MLJ, Almeida MP, Charvet-Almeida P, Farias IP. 2008. A test of utility of DNA barcoding in the radiation of the freshwater stingray genus Potamotrygon (Potamotrygonidae, Myliobatiformes. Genet Mol Biol 31:324–336.
   Web of Science ®Google Scholar
• Ward RD, Zemlak TS, Innes BH, Last PR, Hebert PDN. 2005. DNA barcoding Australia’s fish species. Philos Trans Roy Soc Lond Ser B Biol Sci 360:1847–1857.
   PubMed Web of Science ®Google Scholar
• Winemiller KO, López-Fernández H, Taphorn DC, Nico LG, Barbarino-Duque A. 2008. Fish assemblages of the Casiquiare River, a corridor and zoogeographical filter for dispersal between the Orinoco and Amazon basins. J Biogeogr 35:1551–1563.
   Web of Science ®Google Scholar