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Mitochondrial DNA Part A
DNA Mapping, Sequencing, and Analysis
Volume 30, 2019 - Issue 4
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Research Article

DNA barcoding of shrimps from a mangrove biodiversity hotspot

ORCID Icon, , , , &
Pages 618-625 | Received 27 Nov 2018, Accepted 13 Mar 2019, Published online: 23 Apr 2019

References

  • Ab Doroh NIA. 2016. Diversity and biological aspects of shrimp/prawn species with special reference to Penaeus merguiensis in Merbok River [master’s thesis]. Penang (Malaysia): Universiti Sains Malaysia.
  • Ahmad AT, Mohd Isa M. 1986. Panduan mengenal-pasti jenis-jenis udang laut dagangan di Malaysia. Kuala Lumpur: Jabatan Perikanan, Kementerian Pertanian Malaysia.
  • Alam MMM, Westfall KM, Pálsson S. 2016. Mitogenomic variation of Bangladesh Penaeus monodon (Decapoda, Panaeidae) and reassessment of its phylogeography in the Indo-West Pacific region. Hydrobiologia. 763:249–265.
  • Aldrie LA. 2006. Hutan Simpan Merbok, Kedah: Warisan Kepelbagaian Hutan Paya Bakau. Kuala Lumpur: Jabatan Perhutanan Semenanjung Malaysia.
  • Chaitiamvong S, Supongpan S. 1992. A guide to Penaeoid shrimps found in Thai waters. Townsville (Australia): Australian Institute of Marine Science.
  • Chan TY. 1998. Shrimps and prawns. In: Carpenter KE, Niem VH, editors. FAO species identification guide for Fishery Purposes. The living marine resources of the Western Central Pacific Vol.2. Cephalopods, crustaceans, holothurians and sharks. Rome: FAO; p. 687–1396.
  • DOF. 2018. Annual fisheries statistic 2016: landings of marine fish. [accessed 2018 Oct 3]. http://www.dof.gov.my.
  • Duda TF Jr, Palumbi SR. 1999. Population structure of the black tiger prawn, Penaeus monodon, among western Indian Ocean and western Pacific populations. Mar Biol. 134:705–710.
  • Grey DL, Dall W, Baker A. 1983. A guide to the Australian Penaeid prawns. Northern Territory (Australia): Department of Primary Production.
  • Hayase S, Haron M. 2002. Relationship between mangrove forest and fish and prawn productivity. Fish Sci. 68:558–561.
  • Hebert PDN, Cywinska A, Ball SL, deWaard JR. 2003. Biological identifications through DNA barcodes. Proc Biol Sci. 270:313–322.
  • Jamizan AR, Chong VC. 2017. Demersal fish and shrimp abundance in relation to mangrove hydrogeomorphological metrics. Sains Malays. 46:9–19.
  • Kekkonen M, Hebert PD. 2014. DNA barcode-based delineation of putative species: Efficient start for taxonomic workflows. Mol Ecol Resour. 14:706–715.
  • Khamnamtong B, Klinbunga S, Menasveta P. 2009. Genetic diversity and geographic differentiation of the giant tiger shrimp (Penaeus monodon) in Thailand analyzed by mitochondrial COI sequences. Biochem Genet. 47:42–55.
  • Klinbunga S, Siludjai D, Wudthijinda W, Tassanakajon A, Jarayabhand P, Menasveta P. 2001. Genetic heterogeneity of the giant tiger shrimp (Penaeus monodon) in Thailand revealed by RAPD and mitochondrial DNA RFLP analyses. Mar Biotechnol. 3:428–438.
  • Kundu S, Rath S, Tyagi K, Chakraborty R, Kumar V. 2018. Identification of penaeid shrimp from Chilika Lake through DNA barcoding. Mitochondrial DNA B Resour. 3:161–165.
  • Lanfear R, Calcott B, Ho SY, Guindon S. 2012. Partitionfinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses. Mol Biol Evol. 29:1695–1701.
  • Lohman DJ, de Bruyn M, Page T, von Rintelen K, Hall R, Ng PKL, Shih H-T, Carvalho GR, von Rintelen T. 2011. Biogeography of the Indo-Australian Archipelago. Annu Rev Ecol Evol Syst. 42:205–226.
  • Loneragan NR, Ahmad Adnan N, Connolly RM, Manson FJ. 2005. Prawn landings and their relationship with the extent of mangroves and shallow waters in western peninsular Malaysia. Estuar Coast Shelf Sci. 63:187–200.
  • Mansor MI, Mohammad-Zafrizal MZ, Nur-Fadhilah MA, Khairun Y, Wan-Maznah WO. 2012. Temporal and spatial variations in fish assemblage structures in relation to the physicochemical parameters of the Merbok Estuary. Kedah J Nat Sci Res. 2:110–127.
  • Mckenna DD, Wild AL, Kanda K, Bellamy CL, Beutel RG, Caterino MS, Farnum CW, Hawks DC, Ivie MA, Jameson ML. 2015. The beetle tree of life reveals that Coleoptera survived end Permian mass extinction to diversify during the Cretaceous terrestrial revolution. Syst Entomol. 40:835–880.
  • Mohan R, Selvam V, Azariah J. 1995. Temporal distribution and abundance of shrimp postlarvae and juveniles in the mangroves of Muthupet, Tamilnadu, India. Hydrobiologia. 295:183–191.
  • Naylor RL, Goldburg RJ, Primavera JH, Kautsky N, Beveridge MC, Clay J, Folke C, Lubchenco J, Mooney H, Troell M. 2000. Effect of aquaculture on world fish supplies. Nature. 405:1017–1024.
  • Ong JE. 2003. Plants of the Merbok mangrove, Kedah, Malaysia and the urgent need for their conservation. Folia Malaysiana. 4:1–18.
  • Ong JE, Gong WK, Wong CH. 1980. Ecological survey of the Sungai Merbok Estuarine Mangrove Ecosystem. Penang (Malaysia): Universiti Sains Malaysia.
  • Ong JE, Wan Juliana WA, Yong JWH, Maketab M, Wong YY, Mohd Nasir H. 2015. The Merbok mangrove: present status and the way forward. In: Abd Rahim AR, Ku Aman KA, Abu Hassan MN, Abdullah M, Nor Hazliza MB, Latiff A, Editors. Hutan paya laut Merbok, Kedah: Pengurusan hutan, persekitaran fizikal dan kepelbagaiana flora. Kuala Lumpur (Malaysia): Jabatan Perhutanan Semenanjung Malaysia; p. 21–33.
  • Palumbi SR, Benzie J. 1991. Large mitochondrial DNA differences between morphologically similar Penaeid shrimp. Mol Marine Biol Biotechnol. 1:27–34.
  • Prasanna Kumar C, John BA, Khan SA, Lyla PS, Jalal K. 2012. Limit of DNA barcode in delineating Penaeus monodon and in its developing stages. Sains Malays. 41:1527–1533.
  • Puillandre N, Lambert A, Brouillet S, Achaz G. 2012. ABGD, Automatic Barcode Gap Discovery for primary species delimitation. Mol Ecol. 21:1864–1877.
  • Seemann J, Yingst A, Stuart-Smith RD, Edgar GJ, Altieri AH. 2018. The importance of sponges and mangroves in supporting fish communities on degraded coral reefs in Caribbean Panama. PeerJ. 29:e4455.
  • Sheaves M, Johnston R, Connolly RM, Baker R. 2012. Importance of estuarine mangroves to juvenile banana prawns. Estuar Coast Mar Sci. 114:208–219.
  • Siti Azizah MN, Suhaila AH, Nik A. 2018. Invertebrates and fungi of Merbok: a pictorial guide. Penang (Malaysia): Universiti Sains Malaysia.
  • Stamatakis A. 2014. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. 30:1312–1213.
  • Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. 2013. MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Mol Biol Evol. 30:2725–2729.
  • Tassanakajon A, Pongsomboon S, Jarayabhand P, Klinbunga S, Boonsaeng V. 1998. Genetic structure in wild populations of black tiger shrimp (Penaeus monodon) using randomly amplified polymorphic DNA analysis. J Mar Biotechnol. 6:249–254.
  • Tong JG, Chan TY, Chu KH. 2000. A preliminary phylogenetic analysis of Metapenaeopsis (Decapoda: Penaeidae) based on mitochondrial DNA sequences of selected species from the Indo-West Pacific. J Crustacean Biol. 20:541–549.
  • Venugopal V, Gopakumar K. 2017. Shellfish: nutritive value, health benefits, and consumer safety. Compr Rev Food Sci Food Saf. 16:1219–1242.
  • Walther E, Schöfl G, Mrotzek G, Haryanti Sugama K, Saluz HP. 2011. Paralogous mitochondrial control region in the giant tiger shrimp, Penaeus monodon (F.) affects population genetics inference: a cautionary tale. Mol Phylogenet Evol. 58:404–408.
  • Winnepenninckx B, Backeljau T, De Wachter R. 1993. Extraction of high molecular weight DNA from molluscs. Trends Genet. 9:407.
  • Woodruff DS. 2010. Biogeography and conservation in Southeast Asia: how 2.7 million years of repeated environmental fluctuations affect today’s patterns and the future of the remaining refugial-phase biodiversity. Biodivers Conserv. 19:919–941.
  • Zhang JB, Hanner R. 2011. DNA barcoding is a useful tool for the identification of marine fishes from Japan. Biochem Syst Ecol. 39:31–42.

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