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Research Article

Environmental features drive lineage diversification in the Aricidea assimilis species complex (Annelida, Paraonidae) in the Mediterranean Sea

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Pages 1246-1258 | Received 08 Aug 2022, Accepted 15 Oct 2022, Published online: 14 Nov 2022

References

  • Abbiati M, Maltagliati F. 1992. Genetic population structure of Neanthes succinea (Polychaeta: Nereididae). Journal of the Marine Biological Association UK 72(3):511–517. DOI:10.1017/S0025315400059300.
  • Abbiati M, Maltagliati F. 1996. Allozyme evidence of genetic differentiation between populations of Hediste diversicolor (Polychaeta: Nereididae) from the Western Mediterranean. Journal of the Marine Biological Association UK 76(3):637–647. DOI:10.1017/S0025315400031349.
  • Akaike H. 1974. A new look at the statistical model identification. IEEE Transaction on Automatic Control 19(6):716–723. DOI:10.1109/TAC.1974.1100705.
  • Amoureux L. 1970. Annélides Polychètes du Golfe de Tarente. Resultats des nouvelles croisieres de l’Albatros (1968, 1969). Annali del Museo Civico di Storia Naturale di Genova 78:1–11.
  • Angiulli E, Sola L, Ardizzone G, Fassatoui C, Rossi AR. 2016. Phylogeography of the common pandora Pagellus erythrinus in the central Mediterranean Sea: Sympatric mitochondrial lineages and genetic homogeneity. Marine Biology Research 12(1):4–15. DOI:10.1080/17451000.2015.1069355.
  • Avise JC. 2000. Phylogeography: The history and formation of species. Cambridge: Harvard University Press. pp. 447.
  • Beheregaray LB, Sunnucks P. 2001. Fine-scale genetic structure, estuarine colonization and incipient speciation in the marine silverside fish Odontesthes argentinensis. Molecular Ecology 10(12):2849–2866. DOI:10.1046/j.1365-294X.2001.t01-1-01406.x.
  • Bellan G. 1965. Contribution à l’étude des Polychètes profondes des parages de Monaco et des cotes de la Corse. Bulletin de l’Institut Océanographique de Monaco 65:1–24.
  • Blake JA. 1996. Family Paraonidae Cerruti, 1909. In: Blake JA, Hilbig B, Scott PH, editors. Taxonomic atlas of the Benthic Fauna of the Santa Maria Basin and Western Santa Barbara Channel. 6 – The Annelida Part 3. Polychaeta: Orbiniidae to Cossuridae. Santa Barbara Museum of Natural History, Santa Barbara, California, the U.S.A. pp. 27–70.
  • Bleidorn C, Kruse I, Albrecht S, Bartolomaeus T. 2006. Mitochondrial sequence data expose the putative cosmopolitan polychaete Scoloplos armiger (Annelida, Orbiniidae) as a species complex. BMC Evolutionary Biology 6(1):47. DOI:10.1186/1471-2148-6-47.
  • Boidin-Wichlachz C, Jollivet D, Papot C, Roisin L, Massol F, Tasiemski A. 2021. Genetic diversification and life-cycle of the polychaete Capitella spp. from the English Channel: Evidence for sympatric cryptic species and alternative reproductive strategies. Marine Biology 168(12):176. DOI:10.1007/s00227-021-03972-2.
  • Čandek K, Kuntner M. 2015. DNA barcoding gap: Reliable species identification over morphological and geographical scales. Molecular Ecology Resources 15(2):268–277. DOI:10.1111/1755-0998.12304.
  • Capella-Gutierrez S, Silla-Martinez JM, Gabaldon T. 2009. trimAl: A tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics 25(15):1972–1973. DOI:10.1093/bioinformatics/btp348.
  • Carr CM, Hard SM, Brown TM, Macdonald TA, Hebert PDN. 2011. A tri-oceanic perspective: DNA barcoding reveals geographic structure and cryptic diversity in Canadian polychaetes. Plos One 6(7):e22232. DOI:10.1371/journal.pone.0022232.
  • Castelli A. 1985. Paraonidae (Annelida, Polychaeta) des fonds meubles infralittoraux des côtes toscanes. Cahiers de Biologie Marine 26:267–279.
  • Castelli A. 1987. Censimento dei policheti dei mari italiani: Paraonidae Cerruti, 1909. Atti della Società Toscana di Scienze Naturali. Memorie, Serie B 94:319–340.
  • Casu M, Rivera-Ingraham GA, Cossu P, Lai T, Sanna D, Dedola GL, Sussarellu R, Sella G, Cristo B, Curini-Galletti M, García-Gómez JC, and Espinosa F. 2011. Patterns of spatial genetic structuring in the endangered limpet Patella ferruginea: Implications for the conservation of a Mediterranean endemic. Genetica 139:1293–1308. DOI:10.1007/s10709-012-9631-3.
  • Çinar ME, Dağli E, Kurt–Şahin G. 2014. Checklist of Annelida from the coasts of Turkey. Turkish Journal of Zoology 38:734–764. DOI:10.3906/zoo-1405-72.
  • Cognetti G. 1954. Forme della Mercierella enigmatica nella nuova stazione del Lago di Patria. Bollettino di Zoologia 21:41–45.
  • Cognetti G, Maltagliati F. 2000. Biodiversity and adaptive mechanisms in brackish water fauna. Marine Pollution Bulletin 40:7–14.
  • Cossu P, Maltagliati F, Pannacciulli FG, Simonini R, Massamba-N’Siala G, Casu M, Lardicci C, Prevedelli D, Castelli A. 2015. Phylogeography of Ophryotrocha labronica (Polychaeta, Dorvilleidae) along the Italian coasts. Marine Ecology 36:1088–1097.
  • Di Giuseppe G, Barbieri M, Vallesi A, Luporini P, Dini F. 2013. Phylogeographical pattern of Euplotes nobilii, a protist ciliate with a bipolar biogeographical distribution. Molecular Ecology 22:4029–4037.
  • Elgetany AH, van Rensburg H, Hektoen M, Matthee C, Budaeva N, Simon CA CA, Struck TH. 2020. Species delineation in the speciation grey zone – The case of Diopatra (Annelida, Onuphidae). Zoologica Scripta 49:516–534.
  • Erdoğan-Dereli D, Çinar ME. 2020. The diversity of the genus Aricidea (Polychaeta: Paraonidae) from the Sea of Marmara, with descriptions of two new species and two new records for the Mediterranean fauna. Zootaxa 4844:1–73.
  • Forcina G, Guerrini M, van Grouw H, Gupta BK, Panayides P, Hadjigerou P, Al–Sheikhly OF, Awan MN, Khan AA, Zeder MA, Barbanera F, 2015. Impacts of biological globalization in the Mediterranean: Unveiling the deep history of human–mediated gamebird dispersal. Proceedings of the National Academy of Sciences 112:3296–3301.
  • Giangrande A. 1997. Polychaete reproductive patterns, life cycles and life histories: An overview. Oceanography and Marine Biology 35:323–386.
  • Gibbs PA. 1965. Recent additions to the marine fauna of Whitstable, with a description of Aricidea minuta Southward (Annelida: Polychaeta). Annals and Magazines of Natural History 7:33–36.
  • Grosse M, Zhadan A, Langeneck J, Fiege D, Martínez A. 2021. Still digging: Advances and perspectives in the study of the diversity of several sedentarian annelid families. Diversity 13:132.
  • Hall TA. 1999. BioEdit: A user–friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41:95–98.
  • Hausdorf B. 2011. Progress towards a general species concept. Evolution 65:923–931.
  • Hebert PDN, Cywinska A, Ball SL, deWaard JR, 2003. Biological identification through DNA barcode. Proceedings of the Royal Society of London Series B 270:313–321.
  • Heras S, Roldán MI. 2011. Phylogenetic inference in Odontesthes and Atherina (Teleostei: Atheriniformes) with insights into ecological adaptation. Comptes Rendus Biologies 334:273–281.
  • Hobson KD. 1976. Protoariciella oligobranchia new species (Orbiniidae) and six new records of Orbiniidae, Questidae, and Paraonidae (Annelida, Polychaeta) from British Columbia. Canadian Journal of Zoology 54:591–596.
  • Houpert L, Testor P, Durrieu de Madron X, Somot S, D'Ortenzio F, Estournel C, and Lavigne H. 2015. Seasonal cycle of the mixed layer, the seasonal thermocline and the upper-ocean heat storage rate in the Mediterranean Sea derived from observations. Progress in Oceanography 132:333–352. DOI:10.1016/j.pocean.2014.11.004.
  • Iannotta MA, Gambi MC, Patti FP. 2009. Molecular evidence of intraspecific variability in Lysidice ninetta (Polychaeta: Eunicidae) in the Mediterranean Sea. Aquatic Biology 6:121–132.
  • Iannotta MA, Patti FP, Ambrosino M, Procaccini G, Gambi MC. 2007. Phylogeography of two species of Lysidice (Polychaeta, Eunicidae) associated to the seagrass Posidonia oceanica in the Mediterranean Sea. Marine Biology 150:1115–1126.
  • Jenkins TL, Castilho R, Stevens JR. 2018. Meta-analysis of northeast Atlantic marine taxa shows contrasting phylogeographic patterns following post-LGM expansions. PeerJ 6:e5684.
  • Jimoh AA, Anetekhai MA, Cummings S, Abanikanda OTF, Turner GF, van Oosterhout C, Hänfling B. 2013. Mismatch between molecular (mtDNA) and morphological classification of Macrobrachium prawns from Southern Nigeria: Cryptic freshwater species and brackish water morphotypes. Aquaculture 410–411:25–31.
  • Katzmann W, Laubier L. 1975. Paraonidae (Polychètes Sédentaires) de l’Adriatique. Annalen des Naturhistorischen Museums in Wien. Serie B, Für Botanik und Zoologie 79:567–588.
  • Kimura M. 1980. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution 16:111–120.
  • Kumar S, Stecher G, Tamura K. 2016. MEGA7: Molecular Evolutionary Genetics Analysis version 7.0 for bigger datasets. Molecular Biology and Evolution 33:1870–1874.
  • Kvist S. 2016. Does a global barcoding gap exist in Annelida? Mitochondrial DNA 27:2241–2252.
  • Langeneck J, Barbieri M, Maltagliati F, Castelli A. 2019. Molecular phylogeny of Paraonidae. Molecular Phylogenetics and Evolution 136:1–13.
  • Langeneck J, Scarpa F, Maltagliati F, Sanna D, Barbieri M, Cossu P, Mikac B, Curini-Galletti M, Castelli A, Casu M. 2020. A complex species complex: The controversial role of ecology and biogeography in the evolutionary history of Syllis gracilis Grube, 1840 (Annelida, Syllidae). Journal of Zoological Systematics and Evolutionary Research 58:66–78.
  • Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG. 2007. Clustal W and Clustal X version 2.0. Bioinformatics 23:2947–2948.
  • Laubier L, Ramos J. 1974. Paraonidae (Polychètes Sédentaires) de Méditerranée. Bulletin du Muséum National d’Histoire Naturelle 113:1097–1148.
  • Lobo J, Teixeira MAL, Borges LMS, Ferreira MSG, Hollatz C, Gomes PT, Sousa R, Ravara A, Costa MH, Costa FO. 2016. Starting a DNA barcode reference library for shallow water polychaetes from the Southern European Atlantic coast. Molecular Ecology Resources 16:298–313.
  • Lovell LL. 2002. Paraonidae (Annelida: Polychaeta) of the Andaman Sea, Thailand. Phuket Marine Biological Center Special Publication 24:33–56.
  • Luttikhuizen PC, Dekker R. 2010. Pseudo-cryptic species Arenicola defodiens and Arenicola marina (Polychaeta: Arenicolidae) in Wadden Sea, North Sea and Skagerrak: Morphological and molecular variation. Journal of Sea Research 63:17–23.
  • Mallet J. 2007. Species, concept of. In: Levin S et al, editors. Encyclopedia of biodiversity. Cambridge, Massachussets, the U.S.A: Academic Press. Vol. 5, pp. 427–440.
  • Maltagliati F, Camilli L, Lardicci C, Castelli A. 2001. Evidence for morphological and genetic divergence in Perinereis cultrifera (Polychaeta: Nereididae) from two habitat types at Elba Island. Journal of the Marine Biological Association UK 81:411–414.
  • Maltagliati F, Peru AP, Casu M, Rossi F, Lardicci C, Curini-Galletti M, Castelli A. 2000. Is Syllis gracilis (Polychaeta: Syllidae) a species complex? An allozyme perspective. Marine Biology 136:871–879.
  • Martinelli M, Cadalanu R, Floris A, Santoni M, Rossi F, Lardicci C, Castelli A. 1997. Distribuzione dei policheti in alcuni stagni della Sardegna. Biologia Marina Mediterranea 6:399–402.
  • Meyer A, Bleidorn C, Rouse GW, Hausen H. 2008. Morphological and molecular data suggest a cosmopolitan distribution of the polychaete Proscoloplos cygnochaetus Day, 1954 (Annelida, Orbiniidae). Marine Biology 153:879–889.
  • Modica MV, Russini V, Fassio G, Oliverio M. 2017. Do larval types affect genetic connectivity at sea? Testing hypothesis in two sibling marine gastropods with contrasting larval development. Marine Environmental Research 127:92–101.
  • Napolitano E, Iacono R, Ciuffardi T, Reseghetti F, Poulain P-M, Notarstefano G. 2019. The Tyrrhenian Intermediate Water (TIW): Characterization and formation mechanisms. Progress in Oceanography 170:53–68.
  • Neal L, Wiklund H, Muir AI, Linse K, Glover AG. 2014. The identity of juvenile Polynoidae (Annelida) in the Southern Ocean revealed by DNA taxonomy, with notes on the status of Herdmanella gracilis Ehlers sensu Augener. Memoirs of Museum Victoria 71:203–216.
  • Nygren A. 2014. Cryptic polychaete species: A review. Zoologica Scripta 43:172–183.
  • Nygren A, Pleijel F. 2011. From one to ten in a single stroke – Resolving the European Eumida sanguinea (Phyllodocidae, Annelida) species complex. Molecular Phylogenetics and Evolution 58:132–141.
  • Orlić M, Gačić M, La Violette PE. 1992. The currents and circulation of the Adriatic Sea. Oceanologica Acta 15:109–124.
  • Paradis E. 2010. pegas: An R package for population genetics with an integrated–modular approach. Bioinformatics 26:419–420.
  • Paradis E, Claude J, Strimmer K. 2004. APE: Analyses of phylogenetics and evolution in R language. Bioinformatics 20:289–290.
  • Pérès JM, Picard J. 1964. Nouveau manuel de bionomie benthique. Recueil des Travaux de la Station marine d’Endoume 31:5–137.
  • Pleijel F, Rouse G, Nygren A. 2009. Five colour morphs and three new species of Gyptis (Hesionidae, Annelida) under a jetty in Edithburg, South Australia. Zoologica Scripta 38:89–99.
  • Posada D, Crandall KA. 2001. Intraspecific gene genealogies: Trees grafting into networks. Trends in Ecology & Evolution 16:37–45.
  • Puillandre N, Lambert A, Brouillet S, Achaz G. 2012. ABGD, Automatic Barcode Gap Discovery for primary species delimitation. Molecular Ecology 21:1864–1877.
  • Quiroz-Martinez B, Schmitt FG, Dauvin JC. 2012. Statistical analysis of polychaete population density: Dynamics of dominant species and scaling properties in relative abundance fluctuations. Nonlinear Processes in Geophysics 19:45–52.
  • Righi S, Maletti I, Maltagliati F, Castelli A, Barbieri M, Fai S, Prevedelli D, Simonini R. 2019. Morphometric and molecular characterization of an expanding Ionian population of the fireworm Hermodice carunculata (Annelida). Journal of the Marine Biological Association UK 99:1569–1577.
  • Ronquist F, Teslenko M, van der Mark P, Ayres D, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP. 2011. MrBayes 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology 61:539–542.
  • Sanna D, Biagi F, Alaya HB, Maltagliati F, Addis A, Romero A, De Juan J, Quignard JP, Castelli A, Franzoi P, Torricelli P, Casu M, Carcupino M, Francalacci P. 2013. Mitochondrial variability of the pipefish Syngnathus abaster. Journal of Fish Biology 82:856–876.
  • Sjölin E, Erséus C, Källersjö M. 2005. Phylogeny of Tubificidae (Annelida, Clitellata) based on mitochondrial and nuclear sequence data. Molecular Phylogenetics and Evolution 35:431–441.
  • Strelzov VE. 1973. Polychaete worms of the family Paraonidae Cerruti, 1909 (Polychaeta, Sedentaria). Akademia Nauk. Moscow 170.
  • Struck TH, Feder JL, Bendiksby M, Birkeland S, Cerca J, Gusarov VI, Kistenich S, Larsson K-H, Liow LH, Nowak MD, Stedje B, Bachmann L, Dimitrov D. 2018. Finding evolutionary processes hidden in cryptic species. Trends in Ecology & Evolution 33:153–163.
  • Sur HI, Özsoy E, Ünlüata Ü. 1993. Simultaneous deep and intermediate depth convection in the northern Levantine Sea, winter 1992. Oceanologica Acta 16:33–43.
  • Syomin V, Sikorski A, Bastrop A, Köhler N, Stradomsky B, Fomina E, Matishov D. 2017. The invasion of the genus Marenzelleria (Polychaeta: Spionidae) into the Don River mouth and the Taganrog Bay: Morphological and genetic study. Journal of the Marine Biological Association UK 97:975–984.
  • Tavaré S. 1986. Some probabilistic and statistical problems in the analysis of DNA sequences. Lectures on Mathematics in the Life Sciences 17:57–86.
  • Tebble N. 1959. On a collection of polychaetes from the Mediterranean coast of Israel. Bulletin of the Research Council of Israel B8:9–30.
  • Templeton AR, Crandall KA, Sing CF. 1992. A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram Estimation. Genetics 132:619–633.
  • Trabelsi M, Gilles A, Fleury C, Mâamouri F, Quignard JP, Faure E. 2002. Atherina punctata and Atherina lagunae (Pisces, Atherinidae), new species found in the Mediterranean Sea. 2. Molecular Investigations of Three Atherinid Species. Comptes Rendus Biologies 325:1119–1128.
  • Vaidya G, Lohman DJ, Meier R. 2011. SequenceMatrix: Concatenation software for the fast assembly of multi–gene datasets with character set and codon information. Cladistics 27:171–180.
  • Vignes F, Barbone E, Breber P, D’Adamo R, Roselli L, Ungaro N, Focardi S, Renzi M, Basset A. 2009. Spatial and temporal description of the dystrophic crisis in Lesina lagoon during summer 2008. Transitional Waters Bulletin 2:47–62.
  • Villamor A, Costantini F, Abbiati M. 2014. Genetic structuring across marine biogeographic boundaries in rocky shore invertebrates. Plos One 97:e101135.
  • Virgilio M, Abbiati M. 2004. Habitat discontinuity and genetic structure in populations of the estuarine species Hediste diversicolor (Polychaeta: Nereididae). Estuarine, Coastal and Shelf Science 61:361–367.
  • Weber AAT, Merigot B, Valiere S, Chenuil A. 2015. Influence of the larval phase on connectivity: Strong differences in the genetic structure of brooders and broadcasters in the Ophioderma longicauda species complex. Molecular Ecology 24:6080–6094.
  • Zhang J, Kapli P, Pavlidis P, Stamatakis A. 2013. A general species delimitation method with applications to phylogenetic placements. Bioinformatics 29:2869–2876.