1,472
Views
4
CrossRef citations to date
0
Altmetric
Special issue on Algal Culture collections in the –omics age

Morphological changes and genome evolution in Raphidiopsis raciborskii CS-506 after 23 years in living culture

ORCID Icon, & ORCID Icon
Pages 189-198 | Received 05 Dec 2019, Accepted 04 Apr 2020, Published online: 06 Aug 2020

References

  • Abreu, V. A. C., Popin, R. V., Alvarenga, D. O., Schaker, P. D. C., Hoff-Risseti, C., Varani, A. M., & Fiore, M. F. (2018). Genomic and genotypic characterization of Cylindrospermopsis raciborskii: Toward an intraspecific phylogenetic evaluation by comparative genomics. Frontiers in Microbiology, 9, 306.
  • Aguilera, A., Gómez, E. B., Kaśtovsky, J., Echenique, R. O., & Salerno, G. L. (2018). The polyphasic analysis of two native Raphidiopsis isolates supports the unification of the genera Raphidiopsis and Cylindrospermopsis (Nostocales, Cyanobacteria). Phycologia, 57, 130–146.
  • Andersen, R. (Ed.). (2005). Algal culturing techniques. London: Academic Press.
  • Aziz, R. K., Bartels, D., Best, A. A., De Jongh, M., Disz, T., Edwards, R. A., … Zagnitko, O. (2008). The RAST Server: Rapid annotations using subsystems technology. BMC Genomics, 8, 75.
  • Berge, T., Daugbjerg, N., & Hansen, P. J. (2012). Isolation and cultivation of microalgae select for low growth rate and tolerance to high pH. Harmful Algae, 20, 101–110.
  • Burford, M. A., Beardall, J., Willis, A., Orr, P. T., Magalhaes, V. F., Rangel, L. M., … Neilan, B. (2016). Understanding the winning strategies used by the bloom-forming cyanobacterium Cylindrospermopsis raciborskii. Harmful Algae, 54, 44–53.
  • Burford, M. A., Willis, A., Chuang, A., Man, X., & Orr, P. (2018). Recent insights into physiological responses to nutrients by the cylindrospermopsin producing cyanobacterium Cylindrospermopsis raciborskii. Chinese Journal of Oceanography and Limnology, 36, 1032–1039.
  • Costas, E., Nieto, B., Lopez-Rodas, V., & Salgado, C. (1998). Adaptation to competition by new mutation in clones of Alexandrium minutum. Evolution, 52, 610–613.
  • Davis, T. W., Orr, P. T., Boyer, G. L., & Burford, M. A. (2014). Investigating the production and release of cylindrospermopsin and deoxy-cylindrospermopsin by Cylindro- spermopsis raciborskii over a natural growth cycle. Harmful Algae, 31, 18–25.
  • Demott, W. R., & McKinney, E. N. (2015). Use it or lose it? Loss of grazing defences during laboratory culture of the digestion-resistant green algae Oocystis. Journal of Plankton Research, 37, 399–408.
  • Eaglesham, G. K., Norris, R. L., Shaw, G. R., Smith, M. J., Chiswell, R. K., Davis, B. C., … Moore, M. R. (1999). Use of HPLC–MS/MS to monitor cylindrospermopsin, a blue-green algal toxin, for public health purposes. Environmental Toxicology, 14, 151–154.
  • Fuentes-Valdés, J. J., Plominsky, A. M., Allen, E. E., Tamames, J., & Vásquez, M. (2016). Complete genome sequence of a cylindrospermopsin-producing cyanobacterium, Cylindrospermopsis raciborskii CS505, containing a circular chromosome and a single extrachromosomal element. Genome Announcements, 4, e00823–16.
  • Good, B. H., McDonald, M. J., Barrick, J. E., Lenski, R. E., & Desai, M. M. (2017). The dynamics of molecular evolution over 60,000 generations. Nature, 551, 45–50.
  • Kuo, C.-H., Moran, N. A., & Ochman, H. (2009). The consequences of genetic drift for bacterial genome complexity. Genome Research, 19, 1450–1454.
  • Lakeman, M. B., & Cattolico, R. A. (2007). Cryptic diversity in phytoplankton cultures is revealed using a simple plating technique. Journal of Phycology, 4, 662–674.
  • Lakeman, M. B., von Dassow, P., & Cattolico, R. A. (2009). The strain concept in phytoplankton ecology. Harmful Algae, 8, 746–758.
  • Langmead, B., Trapnell, C., Pop, M., & Salzberg, S. L. (2009). Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biology, 10, R25.
  • Larsson, J., Nylander, J. A. A., & Bergman, B. (2011). Genome fluctuations in cyanobacteria reflect evolutionary, developmental and adaptive traits. BMC Evolutionary Biology, 11, 187.
  • Lenski, R. E. (2017). Experimental evolution and the dynamics of adaptation and genome evolution in microbial populations. The ISME Journal, 11, 2181–2194.
  • Murphy, L. S. (1978). Biochemical taxonomy of marine phytoplankton by electrophoresis of enzymes. II. Loss of heterozygosity in clonal cultures of centric diatoms Skeletonema costatum and Thalassiosira pseudonana. Journal of Phycology, 14, 247–250.
  • Orr, P. T., Willis, A., & Burford, M. A. (2018). Application of first order rate kinetics to explain changes in bloom toxicity – The importance of understanding cell toxin quotas. Chinese Journal of Oceanography and Limnology, 36, 1063–1074.
  • Overbeek, R., Olson, R., Pusch, G. D., Olsen, G. J., Davis, J. J., Disz, T., … Stevens, R. (2014, January). The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST). Nucleic Acids Research, 42, D206–14.
  • Pantůček, R., Sedláček, I., Indráková, A., Vrbovská, V., Mašlaňová, I., Kovařovic, V., … Doškař, J. (2018). Staphylococcus edaphicus sp. nov., isolated in Antarctica, harbors the mecC gene and genomic Islands with a suspected role in adaptation to extreme environments. Applied and Environmental Microbiology, 84, e01746–17.
  • Petkau, A., Stuart-Edwards, M., Stothard, P., & Domselaar, G. V. (2010). Interactive microbial genome visualization with GView. Bioinformatics, 26, 3125–3126.
  • Piccini, C., Aubriot, L., Fabre, A., Amaral, V., González-Piana, M., Giani, A., … Bonilla, S. (2011). Genetic and eco-physiological differences of South American Cylindrospermopsis raciborskii isolates support the hypothesis of multiple ecotypes. Harmful Algae, 10, 644–653.
  • Pierangelini, M., Sinha, R., Willis, A., Burford, M. A., Orr, P. T., Beardall, J., & Neilan, B. A. (2015). Constitutive cylindrospermopsin pool size in Cylindrospermopsis racirborskii under different light and CO2 partial pressure conditions. Applied and Environmental Microbiology, 81, 3069–3076.
  • R Core Team. (2017). R: A language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing. Retrieved from https://www.R-project.org/
  • Saker, M., Neilan, B. A., & Griffiths, D. J. (1999). Two morphological forms of Cylindrospermopsis raciborskii (Cyanobacteria) isolated from Solomon Dam, Palm Island, Queensland. Journal of Phycology, 35, 599–606.
  • Seemann, T. (2014). Prokka: Rapid prokaryotic genome annotation. Bioinformatics, 30, 2068–2069.
  • Sinha, R., Pearson, L. A., Davis, T. W., Muenchhoff, J., Pratama, R., Jex, A., … Neilan, B. A. (2014). Comparative genomics of Cylindrospermopsis raciborskii strains with differential toxicities. BMC Genomics, 15, 83.
  • Stucken, K., John, U., Cembella, A., Murillo, A. A., Soto-Liebe, K., Fuentes-Valdes, J. J., … Glöckner, G. (2010). The smallest known genomes of multicellular and toxic cyanobacteria: Comparison, minimal gene sets for linked traits and the evolutionary implications. PLoS One, 5, e9235.
  • Thompson, A. S., Rhodes, J. C., & Pettman, I. (1988). Culture collection of algae and protozoa, catalogue of strains. Swindon, UK: National Environmental Research Council.
  • Willis, A., Adams, M. P., Chuang, A. W., Orr, P. T., O’Brien, K. R., & Burford, M. A. (2015). Constitutive toxin production under various nitrogen and phosphorus regimes of three ecotypes of Cylindrospermopsis raciborskii ((Woloszynka) Seenayya et Subba Raju). Harmful Algae, 47, 27–34.
  • Willis, A., Woodhouse, J. N., Ongley, S. E., Jex, A. R., Burford, M. A., & Neilan, B. A. (2018). Genome variation in nine co-occurring toxic Cylindrospermopsis raciborskii strains. Harmful Algae, 73, 157–166.
  • Woelkerling, W. J., Kowal, R. R., & Gough, S. B. (1976). Sedgwick-rafter cell counts: A procedural analysis. Hydrobiologia, 48, 95–107.
  • Xiao, M., Willis, A., & Burford, M. A. (2017). Differences in cyanobacterial strain responses to light and temperature reflect species plasticity. Harmful Algae, 62, 84–93.
  • Xu, L., Dong, Z., Fang, L., Luo, Y., Wei, Z., Guo, H., … Wang, Y. (2019). OrthoVenn2: A web server for whole-genome comparison and annotation of orthologous clusters across multiple species. Nucleic Acids Research, 47, W52–W58.