Regulation of histone H3 lysine 9 methylation in inflammation

References

• Acevedo N, Frumento P, Harb H, Alashkar Alhamwe B, Johansson C, Eick L, Alm J, Renz H, Scheynius A, Potaczek DP. 2019. Histone acetylation of immune regulatory genes in human placenta in association with maternal intake of olive Oil and fish consumption. Int J Mol Sci. 20(5):1060.
   Web of Science ®Google Scholar
• Agrawal R, Wisniewski JA, Woodfolk JA. 2011. The role of regulatory T cells in atopic dermatitis. Curr Probl Dermatol. 41:112–124.
   Google Scholar
• Agustí A, Edwards LD, Rennard SI, MacNee W, Tal-Singer R, Miller BE, Vestbo J, Lomas DA, Calverley PM, Wouters E. 2012. Persistent systemic inflammation is associated with poor clinical outcomes in COPD: a novel phenotype. PLoS One. 7(5):e37483.
   PubMed Web of Science ®Google Scholar
• Ahmad S, Manzoor S, Siddiqui S, Mariappan N, Zafar I, Ahmad A, Ahmad A. 2021. Epigenetic underpinnings of inflammation: connecting the dots between pulmonary diseases, lung cancer and COVID-19. Semin Cancer Biol. S1044-579X(21)00008-0. https://doi.org/10.1016/j.semcancer.2021.01.003.
   Web of Science ®Google Scholar
• Alam H, Gu B, Lee MG. 2015. Histone methylation modifiers in cellular signaling pathways. Cell Mol Life Sci. 72(23):4577–4592.
   PubMed Web of Science ®Google Scholar
• Alashkar Alhamwe B, Miethe S, Pogge von Strandmann E, Potaczek DP, Garn H. 2020. Epigenetic regulation of airway epithelium immune functions in asthma. Front Immunol. 11:1747.
   Web of Science ®Google Scholar
• Alberti KGMM, Eckel RH, Grundy SM, Zimmet PZ, Cleeman JI, Donato KA, Fruchart JC, James WP, Loria CM, Smith SC Jr. 2009. Harmonizing the metabolic syndrome: a joint interim statement of the International Diabetes Federation Task Force on Epidemiology and Prevention; National Heart, Lung, and Blood Institute; American Heart Association; World Heart Federation; International Atherosclerosis Society; and International Association for the Study of Obesity. Circulation. 120(16):1640–1645.
   PubMed Web of Science ®Google Scholar
• Allan RS, Zueva E, Cammas F, Schreiber HA, Masson V, Belz GT, Roche D, Maison C, Quivy JP, Almouzni G, et al. 2012. An epigenetic silencing pathway controlling T helper 2 cell lineage commitment. Nature. 487(7406):249–253.
   PubMed Web of Science ®Google Scholar
• Antignano F, Braam M, Hughes MR, Chenery AL, Burrows K, Gold MJ, Oudhoff MJ, Rattray D, Halim TY, Cait A. 2016. G9a regulates group 2 innate lymphoid cell development by repressing the group 3 innate lymphoid cell program. J Exp Med. 213(7):1153–1162.
   PubMed Web of Science ®Google Scholar
• Antignano F, Burrows K, Hughes MR, Han JM, Kron KJ, Penrod NM, Oudhoff MJ, Wang SK, Min PH, Gold MJ, et al. 2014. Methyltransferase G9A regulates T cell differentiation during murine intestinal inflammation. J Clin Invest. 124(5):1945–1955.
   Web of Science ®Google Scholar
• Bacon ER, Brinton RD. 2021. Epigenetics of the developing and aging brain: mechanisms that regulate onset and outcomes of brain reorganization. Neurosci Biobehav Rev. 125:503–516.
   Web of Science ®Google Scholar
• Bayry J, Gautier JF. 2016. Regulatory T cell immunotherapy for type 1 diabetes: a step closer to success? Cell Metab. 23(2):231–233.
   PubMed Web of Science ®Google Scholar
• Bellentani S, Marino M. 2009. Epidemiology and natural history of non-alcoholic fatty liver disease (NAFLD). Ann Hepatol. 8(Suppl 1):S4–S8.
   PubMedGoogle Scholar
• Black JC, Van Rechem C, Whetstine JR. 2012. Histone lysine methylation dynamics: establishment, regulation, and biological impact. Mol Cell. 48(4):491–507.
   PubMed Web of Science ®Google Scholar
• Bosch-Presegué L, Raurell-Vila H, Marazuela-Duque A, Kane-Goldsmith N, Valle A, Oliver J, Serrano L, Vaquero A. 2011. Stabilization of Suv39H1 by SirT1 is part of oxidative stress response and ensures genome protection. Mol. Cell. 42(2):210–223.
   PubMed Web of Science ®Google Scholar
• Bruno A, Dolcetti E, Rizzo FR, Fresegna D, Musella A, Gentile A, De Vito F, Caioli S, Guadalupi L, Bullitta S, et al. 2020. Corrigendum: inflammation-associated synaptic alterations as shared threads in depression and multiple sclerosis. Front Cell Neurosci. 14:647259.
   Web of Science ®Google Scholar
• Carranza-Naval MJ, Vargas-Soria M, Hierro-Bujalance C, Baena-Nieto G, Garcia-Alloza M, Infante-Garcia C, Del Marco A. 2021. Alzheimer's disease and diabetes: role of diet, microbiota and inflammation in preclinical models. Biomolecules. 11(2):262.
   Web of Science ®Google Scholar
• Castelnau PA, Garrett RS, Palinski W, Witztum JL, Campbell IL, Powell HC. 1998. Abnormal iron deposition associated with lipid peroxidation in transgenic mice expressing interleukin-6 in the brain. J Neuropathol Exp Neurol. 57(3):268–282.
   Web of Science ®Google Scholar
• Ceriello A. 2009. Hypothesis: the “metabolic memory”, the new challenge of diabetes. Diabetes Res Clin Pract. 86(Suppl 1):S2–S6.
   PubMedGoogle Scholar
• Ceriello A, Ihnat MA, Thorpe JE. 2009. Clinical review 2: The “metabolic memory": is more than just tight glucose control necessary to prevent diabetic complications? J Clin Endocrinol Metab. 94(2):410–415.
   PubMed Web of Science ®Google Scholar
• Chang S, Aune TM. 2007. Dynamic changes in histone-methylation ‘marks’ across the locus encoding interferon-gamma during the differentiation of T helper type 2 cells. Nat Immunol. 8(7):723–731.
   PubMed Web of Science ®Google Scholar
• Chaturvedi SS, Ramanan R, Waheed SO, Ainsley J, Evison M, Ames JM, Schofield CJ, Karabencheva-Christova TG, Christov CZ. 2019a. Conformational dynamics underlies different functions of human KDM7 histone demethylases. Chemistry. 25(21):5422–5426.
   Web of Science ®Google Scholar
• Chaturvedi SS, Ramanan R, Waheed SO, Karabencheva-Christova TG, Christov CZ. 2019b. Structure-function relationships in KDM7 histone demethylases. Adv Protein Chem Struct Biol. 117:113–125.
   Web of Science ®Google Scholar
• Chen T-T, Wu S-M, Ho S-C, Chuang H-C, Liu C-Y, Chan Y-F, Kuo L-W, Feng P-H, Liu W-T, Chen K-Y. 2017. SUV39H1 reduction is implicated in abnormal inflammation in COPD. Sci Rep. 7:46667.
   Web of Science ®Google Scholar
• Chen X, El Gazzar M, Yoza BK, McCall CE. 2009. The NF-κB factor RelB and histone H3 lysine methyltransferase G9a directly interact to generate epigenetic silencing in endotoxin tolerance. J Biol Chem. 284(41):27857–27865.
   Web of Science ®Google Scholar
• Choi JY, Yoon SS, Kim SE, Ahn Jo S. 2017. KDM4B histone demethylase and G9a regulate expression of vascular adhesion proteins in cerebral microvessels. Sci Rep. 7:45005.
   Web of Science ®Google Scholar
• Choi N, Yang G, Jang JH, Kang HC, Cho YY, Lee HS, Lee JY. 2021. Loganin alleviates gout inflammation by suppressing NLRP3 inflammasome activation and mitochondrial damage. Molecules. 26(4):1071.
   PubMed Web of Science ®Google Scholar
• Control D. 2005., interventions CTEoD, group CSR. Intensive diabetes treatment and cardiovascular disease in patients with type 1 diabetes. N Engl J Med. 353(25):2643–2653.
   Web of Science ®Google Scholar
• Cooper ME. 2012. Diabetes: treating diabetic nephropathy-still an unresolved issue. Nat Rev Endocrinol. 8(9):515–516.
   Web of Science ®Google Scholar
• Cooper ME, Johnston CI. 2000. Optimizing treatment of hypertension in patients with diabetes. JAMA. 283(24):3177–3179.
   Web of Science ®Google Scholar
• Das A, Chai JC, Jung KH, Das ND, Kang SC, Lee YS, Seo H, Chai YG. 2014. JMJD2A attenuation affects cell cycle and tumourigenic inflammatory gene regulation in lipopolysaccharide stimulated neuroectodermal stem cells. Exp Cell Res. 328(2):361–378.
   Web of Science ®Google Scholar
• Das ND, Choi MR, Jung KH, Park JH, Lee HT, Das A, Kim SH, Chai YG. 2013. Functional analysis of histone demethylase Jmjd2b on lipopolysaccharide-treated murine neural stem cells (NSCs). Neurotox Res. 23(2):154–165.
   Web of Science ®Google Scholar
• Devaraj S, Glaser N, Griffen S, Wang-Polagruto J, Miguelino E, Jialal I. 2006. Increased monocytic activity and biomarkers of inflammation in patients with type 1 diabetes. Diabetes. 55(3):774–779.
   PubMed Web of Science ®Google Scholar
• Dinh W, Füth R, Nickl W, Krahn T, Ellinghaus P, Scheffold T, Bansemir L, Bufe A, Barroso MC, Lankisch M. 2009. Elevated plasma levels of TNF-alpha and interleukin-6 in patients with diastolic dysfunction and glucose metabolism disorders. Cardiovasc Diabetol. 8(1):58.
   PubMedGoogle Scholar
• Du J, Johnson LM, Jacobsen SE, Patel DJ. 2015. DNA methylation pathways and their crosstalk with histone methylation. Nat Rev Mol Cell Biol. 16(9):519–532.
   PubMed Web of Science ®Google Scholar
• El Gazzar M, Yoza BK, Chen X, Garcia BA, Young NL, McCall CE. 2009. Chromatin-specific remodeling by HMGB1 and linker histone H1 silences proinflammatory genes during endotoxin tolerance. Mol Cell Biol. 29(7):1959–1971.
   PubMed Web of Science ®Google Scholar
• El Gazzar M, Yoza BK, Chen X, Hu J, Hawkins GA, McCall CE. 2008. G9a and HP1 couple histone and DNA methylation to TNFα transcription silencing during endotoxin tolerance. J Biol Chem. 283(47):32198–32208.
   PubMed Web of Science ®Google Scholar
• El Gazzar M, Yoza BK, Hu JY-Q, Cousart SL, McCall CE. 2007. Epigenetic silencing of tumor necrosis factor α during endotoxin tolerance. J Biol Chem. 282(37):26857–26864.
   PubMed Web of Science ®Google Scholar
• Erdoğan Ö, Xie L, Wang L, Wu B, Kong Q, Wan Y, Chen X. 2016. Proteomic dissection of LPS-inducible, PHF8-dependent secretome reveals novel roles of PHF8 in TLR4-induced acute inflammation and T cell proliferation. Sci Rep. 6:24833.
   Web of Science ®Google Scholar
• Falvo JV, Jasenosky LD, Kruidenier L, Goldfeld AE. 2013. Epigenetic control of cytokine gene expression: regulation of the TNF/LT locus and T helper cell differentiation. Adv Immunol. 118:37–128.
   PubMed Web of Science ®Google Scholar
• Fan J-G, Farrell GC. 2009. Epidemiology of non-alcoholic fatty liver disease in China. J Hepatology. 50(1):204–210.
   PubMed Web of Science ®Google Scholar
• Fang TC, Schaefer U, Mecklenbrauker I, Stienen A, Dewell S, Chen MS, Rioja I, Parravicini V, Prinjha RK, Chandwani R, et al. 2012. Histone H3 lysine 9 di-methylation as an epigenetic signature of the interferon response. J Exp Med. 209(4):661–669.
   PubMed Web of Science ®Google Scholar
• Fiuza BSD, Fonseca HF, Meirelles PM, Marques CR, da Silva TM, Figueiredo CA. 2021. Understanding asthma and allergies by the lens of biodiversity and epigenetic changes. . Front Immunol. 12:623737.
   Web of Science ®Google Scholar
• Fukuyama T, Kosaka T, Miyashita L, Nishino R, Wada K, Hayashi K, Ueda H, Harada T. 2012. Role of regulatory T cells in the induction of atopic dermatitis by immunosuppressive chemicals. Toxicol Lett. 213(3):392–401.
   Web of Science ®Google Scholar
• Green MR, Yoon H, Boss JM. 2006. Epigenetic regulation during B cell differentiation controls CIITA promoter accessibility. J Immunol. 177(6):3865–3873.
   Web of Science ®Google Scholar
• Greer EL, Shi Y. 2012. Histone methylation: a dynamic mark in health, disease and inheritance. Nat Rev Genet. 13(5):343–357.
   PubMed Web of Science ®Google Scholar
• Group AC. 2008. Intensive blood glucose control and vascular outcomes in patients with type 2 diabetes. N Engl J Med. 358(24):2560–2572.
   PubMed Web of Science ®Google Scholar
• Hachiya R, Shiihashi T, Shirakawa I, Iwasaki Y, Matsumura Y, Oishi Y, Nakayama Y, Miyamoto Y, Manabe I, Ochi K, et al. 2016. The H3K9 methyltransferase Setdb1 regulates TLR4-mediated inflammatory responses in macrophages. Sci Rep. 6:28845.
   Web of Science ®Google Scholar
• Harb H, Alashkar Alhamwe B, Acevedo N, Frumento P, Johansson C, Eick L, Papadogiannakis N, Alm J, Renz H, Potaczek DP, et al. 2019. Epigenetic modifications in Placenta are associated with the child's sensitization to allergens. Biomed Res Int. 2019:1315257.
   Web of Science ®Google Scholar
• Huang S. 2002. Histone methyltransferases, diet nutrients and tumour suppressors. Nat Rev Cancer. 2(6):469–476.
   Web of Science ®Google Scholar
• Hyun K, Jeon J, Park K, Kim J. 2017. Writing, erasing and reading histone lysine methylations. Exp Mol Med. 49(4):e324.
   PubMed Web of Science ®Google Scholar
• Iacono G, Dubos A, Meziane H, Benevento M, Habibi E, Mandoli A, Riet F, Selloum M, Feil R, Zhou H, et al. 2018. Increased H3K9 methylation and impaired expression of protocadherins are associated with the cognitive dysfunctions of the kleefstra syndrome. Nucleic Acids Res 46(10):4950–4965.
   Web of Science ®Google Scholar
• Intine RV, Sarras MP. 2012. Metabolic memory and chronic diabetes complications: potential role for epigenetic mechanisms. Curr Diabetes Rep. 12(5):551–559.
   PubMed Web of Science ®Google Scholar
• Janzer A, Lim S, Fronhoffs F, Niazy N, Buettner R, Kirfel J. 2012. Lysine-specific demethylase 1 (LSD1) and histone deacetylase 1 (HDAC1) synergistically repress proinflammatory cytokines and classical complement pathway components. Biochem Biophys Res Commun. 421(4):665–670.
   PubMed Web of Science ®Google Scholar
• Jih G, Iglesias N, Currie MA, Bhanu NV, Paulo JA, Gygi SP, Garcia BA, Moazed D. 2017. Unique roles for histone H3K9me states in RNAi and heritable silencing of transcription. Nature. 547(7664):463.
   Web of Science ®Google Scholar
• Kakaradov B, Arsenio J, Widjaja CE, He Z, Aigner S, Metz PJ, Yu B, Wehrens EJ, Lopez J, Kim SH, et al. 2017. Early transcriptional and epigenetic regulation of CD8(+) T cell differentiation revealed by single-cell RNA sequencing. Nat Immunol. 18(4):422–432.
   PubMed Web of Science ®Google Scholar
• Kang M, Mehrazarin S, Park NH, Wang CY. 2017. Epigenetic gene regulation by histone demethylases: emerging role in oncogenesis and inflammation. Oral Diseases. 23(6):709–720.
   Web of Science ®Google Scholar
• Kim J, Yoon HI, Oh Y-M, Lim SY, Lee J-H, Kim T-H, Lee SY, Lee JH, Lee S-D, Lee C-H. 2015. Lung function decline rates according to GOLD group in patients with chronic obstructive pulmonary disease. Int J Chronic Obstructive Pulm Disease. 10:1819.
   PubMed Web of Science ®Google Scholar
• King GL. 2008. The role of inflammatory cytokines in diabetes and its complications. J Periodontology. 79:1527–1534.
   PubMed Web of Science ®Google Scholar
• Kinoshita T, Goto T. 2021. Links between inflammation and postoperative cancer recurrence. J Clin Med. 10(2):228.
   Web of Science ®Google Scholar
• Kiyici S, Erturk E, Budak F, Ersoy C, Tuncel E, Duran C, Oral B, Sigirci D, Imamoglu S. 2006. Serum monocyte chemoattractant protein-1 and monocyte adhesion molecules in type 1 diabetic patients with nephropathy. Arch Med Res. 37(8):998–1003.
   Web of Science ®Google Scholar
• Lee J, Sayed N, Hunter A, Au KF, Wong WH, Mocarski ES, Pera RR, Yakubov E, Cooke JP. 2012a. Activation of innate immunity is required for efficient nuclear reprogramming. Cell. 151(3):547–558.
   Web of Science ®Google Scholar
• Lee K-Y, Ho S-C, Chan Y-F, Wang C-H, Huang C-D, Liu W-T, Lin S-M, Lo Y-L, Chang Y-L, Kuo L-W. 2012b. Reduced nuclear factor-κB repressing factor: a link toward systemic inflammation in COPD. Eur Respir J. 40(4):863–873.
   PubMed Web of Science ®Google Scholar
• Lesiak A, Smolewski P, Sobolewska-Sztychny D, Sysa-Jedrzejowska A, Narbutt J. 2012. The role of T-regulatory cells and toll-like receptors 2 and 4 in atopic dermatitis. Scand J Immunol. 76(4):405–410.
   PubMed Web of Science ®Google Scholar
• Li H, Petersen S, Garcia Mariscal A, Brakebusch C. 2019. Negative regulation of p53-induced senescence by N-WASP Is crucial for DMBA/TPA-induced skin tumor formation. Cancer Res 79(9):2167–2181.
   Web of Science ®Google Scholar
• Li H, Yao Q, Mariscal AG, Wu X, Halse J, Pedersen E, Helin K, Waisman A, Vinkel C, Thomsen SF, et al. 2018. Epigenetic control of IL-23 expression in keratinocytes is important for chronic skin inflammation. Nat Commun. 9(1):1420.
   PubMedGoogle Scholar
• Li M-F, Zhang R, Li T-T, Chen M-Y, Li L-X, Lu J-X, Jia W-P. 2016. High glucose increases the expression of inflammatory cytokine genes in macrophages through H3K9 methyltransferase mechanism. J Interferon & Cytokine Research. 36(1):48–61.
   PubMed Web of Science ®Google Scholar
• Li Y, Reddy MA, Miao F, Shanmugam N, Yee J-K, Hawkins D, Ren B, Natarajan R. 2008. Role of the histone H3 lysine 4 methyltransferase, SET7/9, in the regulation of NF-κB-dependent inflammatory genes relevance to diabetes and inflammation. J Biol Chem. 283(39):26771–26781.
   PubMed Web of Science ®Google Scholar
• Liu D, Perkins JT, Petriello MC, Hennig B. 2015. Exposure to coplanar PCBs induces endothelial cell inflammation through epigenetic regulation of NF-κB subunit p65. Toxicol Appl Pharmacol. 289(3):457–465.
   PubMed Web of Science ®Google Scholar
• Liu H, Li P, Wei Z, Zhang C, Xia M, Du Q, Chen Y, Liu N, Li H, Yang XP. 2019. Regulation of T cell differentiation and function by epigenetic modification enzymes. Semin Immunopathol. 41(3):315–326.
   PubMed Web of Science ®Google Scholar
• Lutgens E. 2019. Epigenetic quenching of VSMC inflammation in CVD: H3K9me2 in control. Arterioscler Thromb Vasc Biol. 39(11):2199–2200.
   Web of Science ®Google Scholar
• Maiques-Diaz A, Somervaille TC. 2016. LSD1: biologic roles and therapeutic targeting. Epigenomics. 8(8):1103–1116.
   PubMed Web of Science ®Google Scholar
• Marchesini G, Bugianesi E, Forlani G, Cerrelli F, Lenzi M, Manini R, Natale S, Vanni E, Villanova N, Melchionda N, et al. 2003. Nonalcoholic fatty liver, steatohepatitis, and the metabolic syndrome. Hepatology. 37(4):917–923.
   PubMed Web of Science ®Google Scholar
• Mayne CG, Williams CB. 2013. Induced and natural regulatory T cells in the development of inflammatory bowel disease. Inflamm Bowel Dis. 19(8):1772–1788.
   PubMed Web of Science ®Google Scholar
• Mazumdar S, Arendt LM, Phillips S, Sedic M, Kuperwasser C, Gill G. 2015. CoREST1 promotes tumor formation and tumor stroma interactions in a mouse model of breast cancer. PLoS One. 10(3):e0121281.
   Web of Science ®Google Scholar
• Mehta S, Jeffrey KL. 2015. Beyond receptors and signaling: epigenetic factors in the regulation of innate immunity. Immunol Cell Biol. 93(3):233–244.
   PubMed Web of Science ®Google Scholar
• Merkling SH, Bronkhorst AW, Kramer JM, Overheul GJ, Schenck A, Van Rij RP. 2015. The epigenetic regulator G9a mediates tolerance to RNA virus infection in drosophila. PLoS Pathogens. 11(4):e1004692.
   Web of Science ®Google Scholar
• Miao F, Smith DD, Zhang L, Min A, Feng W, Natarajan R. 2008a. Lymphocytes from patients with type 1 diabetes display a distinct profile of chromatin histone H3 lysine 9 dimethylation: an epigenetic study in diabetes. Diabetes. 57(12):3189–3198.
   PubMed Web of Science ®Google Scholar
• Miao F, Wu X, Zhang L, Riggs AD, Natarajan R. 2008b. Histone methylation patterns are cell-type specific in human monocytes and lymphocytes and well maintained at core genes. J Immunol. 180(4):2264–2269.
   PubMed Web of Science ®Google Scholar
• Morrison RF, Farmer SR. 1999. Role of PPARγ in regulating a cascade expression of cyclin-dependent kinase inhibitors, p18 (INK4c) and p21 (Waf1/Cip1), during adipogenesis. J Biol Chem. 274(24):17088–17097.
   Web of Science ®Google Scholar
• Mourits VP, Wijkmans JC, Joosten LA, Netea MG. 2018. Trained immunity as a novel therapeutic strategy. Curr Opin Pharmacol. 41:52–58.
   PubMed Web of Science ®Google Scholar
• Mozzetta C, Boyarchuk E, Pontis J, Ait-Si-Ali S. 2015. Sound of silence: the properties and functions of repressive Lys methyltransferases. Nat Rev Mol Cell Biol. 16(8):499–513.
   PubMed Web of Science ®Google Scholar
• Nakayama J, Rice JC, Strahl BD, Allis CD, Grewal SI. 2001. Role of histone H3 lysine 9 methylation in epigenetic control of heterochromatin assembly. Science. 292(5514):110–113.
   PubMed Web of Science ®Google Scholar
• Nano J, Fernandez EP, Troup J, Ghanbari M, Franco OH, Muka T. 2018. Epigenetics of diabetes in humans. In: Tollefsbol TO, editor. Epigenetics in human disease Vol 6. 2nd ed.. Cambridge, MA: Academic Press; p. 457–488.
   Google Scholar
• Nowak RP, Tumber A, Johansson C, et al. 2016. Advances and challenges in understanding histone demethylase biology. Curr Opin Chem Biol. 33:151–159.
   PubMed Web of Science ®Google Scholar
• Okamura M, Inagaki T, Tanaka T, Sakai J. 2010. Role of histone methylation and demethylation in adipogenesis and obesity. Organogenesis. 6(1):24–32.
   PubMed Web of Science ®Google Scholar
• Placha D, Jampilek J. 2021. Chronic inflammatory diseases, anti-inflammatory agents and their delivery nanosystems. Pharmaceutics. 13(1):64.
   Web of Science ®Google Scholar
• Qi H, Jing Z, Xiaolin W, Changwu X, Xiaorong H, Jian Y, Jing C, Hong J. 2015. Histone demethylase JMJD2A inhibition attenuates neointimal hyperplasia in the carotid arteries of balloon-injured diabetic rats via transcriptional silencing: inflammatory gene expression in vascular smooth muscle cells. Cell Physiol Biochem. 37(2):719–734.
   PubMedGoogle Scholar
• Rao VK, Pal A, Taneja R. 2017. A drive in SUVs: from development to disease. Epigenetics. 12(3):177–186.
   PubMed Web of Science ®Google Scholar
• Reddy MA, Tak Park J, Natarajan R. 2013. Epigenetic modifications in the pathogenesis of diabetic nephropathy. Semin Nephrol. 33(4):341–353.
   PubMed Web of Science ®Google Scholar
• Reddy MA, Villeneuve LM, Wang M, Lanting L, Natarajan R. 2008. Role of the lysine-specific demethylase 1 in the proinflammatory phenotype of vascular smooth muscle cells of diabetic mice. Circ Res. 103(6):615–623.
   PubMed Web of Science ®Google Scholar
• Rodriguez RM, Suarez-Alvarez B, Lavin JL, Mosen-Ansorena D, Baragano Raneros A, Marquez-Kisinousky L, Aransay AM, Lopez-Larrea C. 2017. Epigenetic networks regulate the transcriptional program in memory and terminally differentiated CD8+ T cells. J Immunol. 198(2):937–949.
   Web of Science ®Google Scholar
• Romano S, Savva GM, Bedarf JR, Charles IG, Hildebrand F, Narbad A. 2021. Meta-analysis of the Parkinson's disease gut microbiome suggests alterations linked to intestinal inflammation. NPJ Parkinsons Dis. 7(1):27.
   PubMed Web of Science ®Google Scholar
• Ross R. 1999. Atherosclerosis—an inflammatory disease. N Engl J Med. 340(2):115–126.
   PubMed Web of Science ®Google Scholar
• Saccani S, Natoli G. 2002. Dynamic changes in histone H3 Lys 9 methylation occurring at tightly regulated inducible inflammatory genes. Genes Dev 16(17):2219–2224.
   PubMed Web of Science ®Google Scholar
• Sato H, Taketomi Y, Ushida A, Isogai Y, Kojima T, Hirabayashi T, Miki Y, Yamamoto K, Nishito Y, Kobayashi T. 2014. The adipocyte-inducible secreted phospholipases PLA2G5 and PLA2G2E play distinct roles in obesity. Cell Metabolism. 20(1):119–132.
   Web of Science ®Google Scholar
• Schliehe C, Flynn EK, Vilagos B, Richson U, Swaminathan S, Bosnjak B, Bauer L, Kandasamy RK, Griesshammer IM, Kosack L. 2015. The methyltransferase Setdb2 mediates virus-induced susceptibility to bacterial superinfection. Nat Immunol. 16(1):67.
   PubMed Web of Science ®Google Scholar
• Schnell O, Erbach M, Hummel M. 2012. Primary and secondary prevention of cardiovascular disease in diabetes with aspirin. Diab Vasc Dis Res. 9(4):245–255.
   PubMedGoogle Scholar
• Shi Y, Lan F, Matson C, Mulligan P, Whetstine JR, Cole PA, Casero RA, Shi Y. 2004. Histone demethylation mediated by the nuclear amine oxidase homolog LSD1. Cell. 119(7):941–953.
   PubMed Web of Science ®Google Scholar
• Song Y, Dagil L, Fairall L, Robertson N, Wu M, Ragan TJ, Savva CG SA, Morone N, Kunze MBA, Jamieson AG, et al. 2020. Mechanism of crosstalk between the LSD1 demethylase and HDAC1 deacetylase in the CoREST complex. Cell Rep. 30(8):2699–2711.
   Web of Science ®Google Scholar
• Sui Y, Gu R, Janknecht R. 2021. Crucial functions of the JMJD1/KDM3 epigenetic regulators in cancer. Mol Cancer Res. 19(1):3–13.
   Web of Science ®Google Scholar
• Swindell WR, Johnston A, Xing X, Voorhees JJ, Elder JT, Gudjonsson JE. 2013. Modulation of epidermal transcription circuits in psoriasis: new links between inflammation and hyperproliferation. PLoS One. 8(11):e79253.
   Web of Science ®Google Scholar
• Tachibana M, Ueda J, Fukuda M, Takeda N, Ohta T, Iwanari H, Sakihama T, Kodama T, Hamakubo T, Shinkai Y. 2005. Histone methyltransferases G9a and GLP form heteromeric complexes and are both crucial for methylation of euchromatin at H3-K9. Genes Dev. 19(7):815–826.
   PubMed Web of Science ®Google Scholar
• Tanaka A, Sakaguchi S. 2019. Targeting Treg cells in cancer immunotherapy. Eur J Immunol. 49(8):1140–1146.
   PubMed Web of Science ®Google Scholar
• Taniuchi I, Ellmeier W, Littman DR. 2004. The CD4/CD8 lineage choice: new insights into epigenetic regulation during T cell development. Adv Immunol. 83:55–89.
   Web of Science ®Google Scholar
• Tausendschön M, Dehne N, Brüne B. 2011. Hypoxia causes epigenetic gene regulation in macrophages by attenuating Jumonji histone demethylase activity. Cytokine. 53(2):256–262.
   PubMed Web of Science ®Google Scholar
• Tsukada Y-i, Ishitani T, Nakayama KI. 2010. KDM7 is a dual demethylase for histone H3 Lys 9 and Lys 27 and functions in brain development. Genes & Development. 24(5):432–437.
   PubMed Web of Science ®Google Scholar
• Tumes DJ, Papadopoulos M, Endo Y, Onodera A, Hirahara K, Nakayama T. 2017. Epigenetic regulation of T-helper cell differentiation, memory, and plasticity in allergic asthma. Immunol Rev. 278(1):8–19.
   PubMed Web of Science ®Google Scholar
• Vaquero A, Scher M, Lee D, Erdjument-Bromage H, Tempst P, Reinberg D. 2004. Human SirT1 interacts with histone H1 and promotes formation of facultative heterochromatin. Mol Cell. 16(1):93–105.
   PubMed Web of Science ®Google Scholar
• Vestbo J, Hurd SS, Agustí AG, Jones PW, Vogelmeier C, Anzueto A, Barnes PJ, Fabbri LM, Martinez FJ, Nishimura M. 2013. Global strategy for the diagnosis, management, and prevention of chronic obstructive pulmonary disease: GOLD executive summary. Am J Respir Crit Care Med. 187(4):347–365.
   PubMed Web of Science ®Google Scholar
• Villeneuve LM, Natarajan R. 2010. The role of epigenetics in the pathology of diabetic complications. Am J Physiol Renal Physiol. 299(1):F14–F25.
   PubMed Web of Science ®Google Scholar
• Villeneuve LM, Reddy MA, Lanting LL, Wang M, Meng L, Natarajan R. 2008. Epigenetic histone H3 lysine 9 methylation in metabolic memory and inflammatory phenotype of vascular smooth muscle cells in diabetes. PNAS. 105(26):9047–9052.
   PubMed Web of Science ®Google Scholar
• Wakabayashi Y, Tamiya T, Takada I, Fukaya T, Sugiyama Y, Inoue N, Kimura A, Morita R, Kashiwagi I, Takimoto T, et al. 2011. Histone 3 lysine 9 (H3K9) methyltransferase recruitment to the interleukin-2 (IL-2) promoter is a mechanism of suppression of IL-2 transcription by the transforming growth factor-beta-Smad pathway. J Biol Chem. 286(41):35456–35465.
   Web of Science ®Google Scholar
• Wang J, Yan W, Peng X, Jiang Y, He L, Peng Y, Chen X, Ye M, Zhuo H. 2018. Functional role of SUV39H1 in human renal tubular epithelial cells under high-glucose ambiance. Inflammation. 41(1):1–10.
   Web of Science ®Google Scholar
• Wang L, Liu Y, Han R, Beier UH, Bhatti TR, Akimova T, Greene MI, Hiebert SW, Hancock WW. 2015. FOXP3+ regulatory T cell development and function require histone/protein deacetylase 3. J Clin Invest. 125(3):1111–1123.
   PubMed Web of Science ®Google Scholar
• Wang X, Wang S, Yao G, Yu D, Chen K, Tong Q, Ye L, Wu C, Sun Y, Li H, et al. 2017. Identification of the histone lysine demethylase KDM4A/JMJD2A as a novel epigenetic target in M1 macrophage polarization induced by oxidized LDL. Oncotarget. 8(70):114442–114456.
   PubMedGoogle Scholar
• Wei G, Wei L, Zhu J, Zang C, Hu-Li J, Yao Z, Cui K, Kanno Y, Roh TY, Watford WT, et al. 2009. Global mapping of H3K4me3 and H3K27me3 reveals specificity and plasticity in lineage fate determination of differentiating CD4+ T cells. Immunity. 30(1):155–167.
   PubMed Web of Science ®Google Scholar
• Williams R. 2006. Global challenges in liver disease. Hepatology. 44(3):521–526.
   PubMed Web of Science ®Google Scholar
• Wilson C, Krieg AJ. 2019. KDM4B: a nail for every hammer? Genes. 10(2):134.
   Web of Science ®Google Scholar
• Wu WH, Zegarra-Ruiz DF, Diehl GE. 2020. Intestinal microbes in autoimmune and inflammatory disease. Front Immunol. 11:597966.
   PubMed Web of Science ®Google Scholar
• Wu X, Yuan B, López E, Bai C, Wang X. 2014. Gene polymorphisms and chronic obstructive pulmonary disease. J Cell Mol Med. 18(1):15–26.
   Web of Science ®Google Scholar
• Yang B, Yang J, Bai J, Pu P, Liu J, Wang F, Ruan B. 2014. Suv39h1 protects from myocardial ischemia-reperfusion injury in diabetic rats. Cell Physiol Biochem. 33(4):1176–1185.
   Google Scholar
• Yang Y-T, Wang X, Zhang Y-Y, Yuan W-J. 2019. The histone demethylase LSD1 promotes renal inflammation by mediating TLR4 signaling in hepatitis B virus-associated glomerulonephritis. Cell Death Disease. 10(4):278.
   Google Scholar
• Yoo J, Jeon YH, Cho HY, Lee SW, Kim GW, Lee DH, Kwon SH. 2020. Advances in histone demethylase KDM3A as a cancer therapeutic target. Cancers (Basel). 12(5):1098.
   Web of Science ®Google Scholar
• Yoshida K, Maekawa T, Zhu Y, Renard-Guillet C, Chatton B, Inoue K, Uchiyama T, Ishibashi K-i, Yamada T, Ohno N. 2015. The transcription factor ATF7 mediates lipopolysaccharide-induced epigenetic changes in macrophages involved in innate immunological memory. Nat Immunol. 16(10):1034.
   Web of Science ®Google Scholar
• Yu X-Y, Geng Y-J, Liang J-L, Zhang S, Lei H-P, Zhong S-L, Lin Q-X, Shan Z-X, Lin S-G, Li Y. 2012. High levels of glucose induce “metabolic memory” in cardiomyocyte via epigenetic histone H3 lysine 9 methylation. Mol Biol Rep. 39(9):8891–8898.
   Web of Science ®Google Scholar
• Zhang X, Cook PC, Zindy E, et al. 2016. Integrin alpha4beta1 controls G9a activity that regulates epigenetic changes and nuclear properties required for lymphocyte migration. Nucleic Acids Res. 44(7):3031–3044.
   PubMed Web of Science ®Google Scholar
• Zhang X, Liu S, Weng X, Zeng S, Yu L, Guo J, Xu Y. 2018. Brg1 deficiency in vascular endothelial cells blocks neutrophil recruitment and ameliorates cardiac ischemia-reperfusion injury in mice. Int J Cardiol. 269:250–258.
   Web of Science ®Google Scholar
• Zhang Y, Maksimovic J, Naselli G, Qian J, Chopin M, Blewitt ME, Oshlack A, Harrison LC. 2013. Genome-wide DNA methylation analysis identifies hypomethylated genes regulated by FOXP3 in human regulatory T cells. Blood. 122(16):2823–2836.
   PubMed Web of Science ®Google Scholar
• Zhang Y, Yuan Y, Li Z, Chen H, Fang M, Xiao P, Xu Y. 2019. An interaction between BRG1 and histone modifying enzymes mediates lipopolysaccharide-induced proinflammatory cytokines in vascular endothelial cells. J Cell Biochem. 120(8):13216–13225.
   Web of Science ®Google Scholar