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Microbiology

Analysis of gut-associated fungi from Chinese mitten crab Eriocheir sinensis

, , & ORCID Icon
Pages 610-621 | Received 29 Apr 2021, Accepted 01 Jun 2021, Published online: 25 Jun 2021

References

  • Al-Duboon AH, Farhan FJ. 2007. Fungi associated with the crab Sesarma boulengeri Calman from Shatt-AI-Arab river, Basrah-Iraq. Marina Mesopotamica. 22:71–80.
  • Al-Yasiri MH, Normand AC, Piarroux R, Ranque S, Mauffrey JF. 2016. Gut yeast communities in Larus michahellis from various breeding colonies. Med Mycol. 55:436–444.
  • Alexopoulos CJ, Mims CW. 1979. Introductory mycology, 3rd ed. New York: John Wiley & Sons.
  • Anaissie E., Bodey G. P., Kantarjian H., Ro J., Vartivarian S. E., Hopfer R., Hoy J., Rolston K. 1989. New spectrum of fungal infections in patients with cancer. Clin Infect Dis. 11:369–378.
  • Anaissie E, Kantarjian H, Ro J, Hopfer R, Rolston K, Fainstein V, Bodey G. 1988. The emerging role of Fusarium infections in patients with cancer. Medicine (Baltimore). 67:77–83.
  • Barrett KA, Nakao JH, Taylor EV, Eggers C, Gould LH. 2017. Fish-associated foodborne disease outbreaks: United States, 1998–2015. Foodborne Pathog Dis 14:537–543.
  • Bashir MA, Liu J, Geng Y, Wang H, Pan J, Zhang D, Rehim A, Aon M, Liu H. 2020. Co-culture of rice and aquatic animals: an integrated system to achieve production and environmental sustainability. J Clean Prod. 249:119310.
  • Bennett A, Ponder MM, Garcia-Diaz J. 2018. Phoma infections: classification, potential food sources, and their clinical impact. Microorganisms. 6:58–69.
  • Bolnick DI, Snowberg LK, Hirsch PE, Lauber CL, Org E, Parks B, Lusis AJ, Knight R, Caporaso JG, Svanbäck R. 2014. Individual diet has sex-dependent effects on vertebrate gut microbiota. Nat Commun. 5:4500.
  • Burdon JJ, Silk J. 1997. Sources and patterns of diversity in plant-pathogenic fungi. Phytopathology. 87:664–669.
  • Cavalier-Smith T. 1998. A revised six-kingdom system of life. Biol Rev. 73:203–266.
  • Ceriani-Nakamurakare E, Mc Cargo P, Gonzalez-Audino P, Ramos S, Carmarán C. 2020. New insights into fungal diversity associated with Megaplatypus mutatus: gut mycobiota. Symbiosis. 81:127–137.
  • Chaiyapechara S, Rungrassamee W, Suriyachay I, Kuncharin Y, Klanchui A, Karoonuthaisiri N, Jiravanichpaisal P. 2012. Bacterial community associated with the intestinal tract of P. monodon in commercial farms. Microb Ecol. 63:938–953.
  • Chen X, Di P, Wang H, Li B, Pan Y, Yan S, Wang Y. 2015. Bacterial community associated with the intestinal tract of Chinese mitten crab (Eriocheir sinensis) farmed in Lake Tai, China. PLoS One. 10:e0123990.
  • Chin VK, Yong VC, Chong P, Nordin SA, Abdullah M. 2020. Mycobiome in the gut: a multiperspective review. Mediat Inflamm. 2020:1–16.
  • De Marco L, Epis S, Capone A, Martin E, Bozic J, Crotti E, Ricci I, Sassera D. 2018. The genomes of four Meyerozyma caribbica isolates and novel insights into the Meyerozyma guilliermondii species complex. G3 Genes|Genomes|Genetics. 8:755–759.
  • Ding Z, Meng Q, Liu H, Yuan S, Zhang F, Sun M, Zhao Y, Shen M, Zhou G, Pan J, Xue H, Wang W 2016. First case of hepatopancreatic necrosis disease in pond reared Chinese mitten crab, Eriocheir sinensis, associated with microsporidian. J Fish Dis. 39:1043–1051.
  • Dong J, Li X, Zhang R, Zhao Y, Wu G, Liu J, Zhu X, Li L. 2018. Comparative analysis of the intestinal bacterial community and expression of gut immunity genes in the Chinese mitten crab (Eriocheir sinensis). AMB Express. 8:192.
  • Dong S, Shen Z, Xu L, Zhu F. 2010. Sequence and phylogenetic analysis of SSU rRNA gene of five microsporidia. Curr Microbiol. 60:30–37.
  • Dörr AJM, Rodolfi M, Elia AC, Scalici M, Garzoli L, Picco AM. 2012. Mycoflora on the cuticle of the invasive crayfish Procambarus clarkii. Fundam Appl Limnol. 180:77–84.
  • Doyle J. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull. 19:11–15.
  • Enaud R, Vandenborght LE, Coron N, Bazin T, Prevel R, Schaeverbeke T, Berger P, Fayon M, Lamireau T, Delhaes L. 2018. The mycobiome: A neglected component in the microbiota-gut-brain axis. Microorganisms. 6:22–34.
  • Erer B, Galimberti M, Lucarelli G, Giardini C, Polchi P, Baronciani D, Gaziev D, Angelucci E, Izzi G 2000. Trichosporon beigelii: A life-threatening pathogen in immunocompromised hosts. Bone Marrow Transplant. 25:745–749.
  • Fang W, Latgé JP. 2018. Microbe profile: Aspergillus fumigatus: a saprotrophic and opportunistic fungal pathogen. Microbiology. 164:1009–1011.
  • Fernando CH. 1993. Rice field ecology and fish culture - an overview. Hydrobiologia. 259:91–113.
  • Fierer N, Hamady M, Lauber CL, Knight R. 2008. The influence of sex, handedness, and washing on the diversity of hand surface bacteria. Proc Natl Acad Sci USA. 105:17994–17999.
  • Fincher R-ME, Fisher JF, Lovell RD, Newman CL, Espinel-Ingroff A, Shadomy HJ. 1991. Infection due to the fungus Acremonium (cephalosporium). Medicine (Baltimore). 70:398–409.
  • Fleming RV, Walsh TJ, Anaissie EJ. 2002. Emerging and less common fungal pathogens. Infect Dis Clin North Am. 16:915–933.
  • Gilman JC. 1957. A manual of soil fungi. Ames: The Iowa State University Press.
  • Gosiewski T, Salamon D, Szopa M, Sroka A, Malecki MT, Bulanda M. 2014. Quantitative evaluation of fungi of the genus Candida in the feces of adult patients with type 1 and 2 diabetes – a pilot study. Gut Pathog. 6:43–47.
  • Guiserix JE, Ramdane M, Finielz P, Michault A, Rajaonarivelo P. 1996. Trichoderma harzianum peritonitis in peritoneal dialysis. Nephron. 74:473–474.
  • Halwart M. 2008. Biodiversity nutrition and livelihoods in aquatic rice-based ecosystems. Biodiversity. 9:36–40.
  • Hamad I, Sokhna C, Raoult D, Bittar F, Badger JH. 2012. Molecular detection of eukaryotes in a single human stool sample from Senegal. PLoS One. 7:e40888.
  • Haro C, Rangel-Zúñiga OA, Alcalá-Díaz JF, Gómez-Delgado F, Pérez-Martínez P, Delgado-Lista J, Quintana-Navarro GM, Landa BB, Navas-Cortés JA, Tena-Sempere M, et al. 2016. Intestinal microbiota is influenced by gender and body mass index. PLoS One. 11:e0154090.
  • Harris JM. 1993. The presence, nature, and role of gut microflora in aquatic invertebrates: a synthesis. Microb Ecol. 25:195–231.
  • Hermann-Bank ML, Skovgaard K, Stockmarr A, Larsen N, Mølbak L. 2013. The Gut microbiotassay: a high-throughput qPCR approach combinable with next generation sequencing to study gut microbial diversity. BMC Genom. 14:788.
  • Hu L, Zhang J, Ren W, Guo L, Cheng Y, Li J, Li K, Zhu Z, Zhang J, Luo S, et al. 2016. Can the co-cultivation of rice and fish help sustain rice production? Sci Rep. 6:28728.
  • Hyning J, Scarborough AM. 1973. Identification of fungal encrustation on the shell of the Snow crab (Chionoecetes bairdi). J Fish Res Board Can. 30:1738–1739.
  • Li J, Jiang H, Li L, Zhang X, Chen J. 2019. The effect of disease and season to hepatopancreas and intestinal mycobiota of Litopenaeus vannamei. Front Microbiol. 10:889.
  • Li S, Sun L, Wu H, Hu Z, Liu W, Li Y, Wen X. 2012. The intestinal microbial diversity in mud crab (Scylla paramamosain) as determined by PCR-DGGE and clone library analysis. Appl Microbiol. 113:1341–1351.
  • Liu X, Yan C, Wang X, Rong J. 2004. Foodborne disease outbreaks in China from 1992 to 2001 national foodborne disease surveillance system. J Hygiene Res. 33:725–727.
  • Lodder J. 1970. The yeast, a taxonomic study, 2nd ed. Amsterdam: North-Holland Publishing Co.
  • Loeppky CB, Sprouse RF, Carlson JV, Everett ED. 1983. Trichoderma viride peritonitis. South Med J. 76:798–799.
  • Margalef R. 1957. Information theory in ecology. Gen Syst. 3:36–71.
  • Markle JG, Frank DN, Mortin-Toth S, Robertson CE, Feazel LM, Rolle-Kampczyk U, von Bergen M, McCoy KD, Macpherson AJ, Danska JS. 2013. Sex differences in the gut microbiome drive hormone-dependent regulation of autoimmunity. Science. 339:1084–1088.
  • Obana Y, Sano M, Jike T, Homma T, Nemoto N. 2010. Differential diagnosis of trichosporonosis using conventional histopathological stains and electron microscopy. Histopathology. 56:372–383.
  • Ondov BD, Bergman NH, Phillippy AM. 2011. Interactive metagenomic visualization in a web browser. BMC Bioinform. 12:385.
  • Pang KL, Guo SY, Chen IA, Burgaud G, Luo ZH, Dahms HU, Hwang JS, Lin YL, Huang JS, Ho TW, et al. 2019. Insights into fungal diversity of a shallow-water hydrothermal vent field at Kueishan Island, Taiwan by culture-based and metabarcoding analyses. PLoS One. 14:e0226616.
  • People's Republic of China Ministry of Agriculture. 2019. China fishery statistical yearbook 2019. Beijing: China Agriculture Press.
  • Pielou EC. 1966. Species-diversity and pattern-diversity in the study of ecological succession. J Theor Biol. 10:370–383.
  • Pitts GY, Cowley GT. 1974. Mycoflora of the habitat and midgut of the fiddler crab, Uca pugilator. Mycologia. 66:669–675.
  • Ragnaud JM, Marceau C, Roche-Bezian MC, Wone C. 1984. Infection péritonéale à Trichoderma koningii sur dialyse péritonéale continue ambulatoire. Med Mal Infect. 14:402–405.
  • Rand TG. 2004. Fungi associated with aquatic animals. In: Mueller GM, Bills GF, Foster MS, editor. Biodiversity of fungi: inventory and monitoring methods. Burlington: Elsevier Academic Press; p. 577–586.
  • Rivera FN, González E, Gómez Z, López N, Hernández-Rodríguez C, Berkov A, Zúñiga G. 2009. Gut-associated yeast in bark beetles of the genus Dendroctonus erichson (Coleoptera: Curculionidae: scolytinae). Biol J Linn Soc. 98:325–342.
  • Rota S, Marchesi D, Farina C, de Bièvre C. 2000. Trichoderma pseudokoningii peritonitis in automated peritoneal dialysis patient successfully treated by early catheter removal. Perit Dial Int. 20:91–93.
  • Shen H, Zang Y, Song K, Ma Y, Dai T, Serwadda A. 2017. A meta-transcriptomics survey reveals changes in the microbiota of the Chinese Mitten Crab Eriocheir sinensis infected with hepatopancreatic necrosis disease. Front Microbiol. 8:732.
  • Simpson H. 1949. Measurement of diversity. Nature. 163:688–688.
  • Sonoyama Kei, Miki Atsuko, Sugita Ryusuke, Goto Haruka, Nakata Mayumi, Yamaguchi Natsu 2011. Gut colonization by Candida albicans aggravates inflammation in the gut and extra-gut tissues in mice. Med Mycol. 49:237–247.
  • Spellerberg IF, Fedor PJ. 2003. A tribute to Claude Shannon (1916–2001) and a plea for more rigorous use of species richness, species diversity and the ‘Shannon–Wiener’ index. Glob Ecol Biogeogr. 12:177–179.
  • Strati F, Di Paola M, Stefanini I, Albanese D, Rizzetto L, Lionetti P, Calabrò A, Jousson O, Donati C, Cavalieri D, De Filippo C. 2016. Age and gender affect the composition of fungal population of the human gastrointestinal tract. Front Microbiol. 7:1227.
  • Sui LY, Wu XG, Wille M, Cheng YX, Sorgeloos P. 2009. Effect of dietary soybean lecithin on reproductive performance of Chinese mitten crab Eriocheir sinensis (H. Milne-Edwards) Broodstock. Aquac Int. 17:45–56.
  • Tanis BC, van der Pijl H, van Ogtrop ML, Kibbelaar RE, Chang PC. 1995. Fatal fungal peritonitis by Trichoderma longibrachiatum complicating peritoneal dialysis. Nephrol Dial Transplant. 10:114–116.
  • Truss CO. 1981. The role of Candida albicans in human illness. J Orthomol Med. 10:228–238.
  • Vicente VA, Orélis-Ribeiro R, Najafzadeh MJ, Sun J, Guerra RS, Miesch S, Ostrensky A, Meis JF, Klaassen CH, de Hoog GS, Boeger WA. 2012. Black yeast-like fungi associated with lethargic crab disease (LCD) in the mangrove-land crab, Ucides cordatus (Ocypodidae). Vet Microbiol. 158:109–122.
  • Victor SS, Pahirulzaman KAK. 2020. Molecular identification of fungi isolated from infected redclaw crayfish, Cherax quadricarinatus. IOP Conf Ser Earth Environ Sci. 596:012092.
  • White TJ, Bruns T, Lee S, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, editor. PCR protocols: A guide to methods and applications. San Diego: Academic Press; p. 315–322.
  • Xu M, Ma XZ, Wang W. 2014. Effects of different cultivation patterns on rice yield and crab in rice-crab culture system. Scientia Agricultura Sinica. 47:1828–1835.
  • Xu JF, Zhang JZ. 2012. Analysis of foodborne disease outbreaks in China from 2001 to 2010. Chin Agric Sci Bull. 28:313–316.
  • Yan Q, van der Gast CJ, Yu Y, Bereswill S. 2012. Bacterial community assembly and turnover within the intestines of developing zebrafish. PLoS One. 7:e30603.
  • Yang S, Gao X, Meng J, Zhang A, Zhou Y, Long M, Li B, Deng W, Jin L, Zhao S, et al. 2018. Metagenomic analysis of bacteria, fungi, bacteriophages, and helminths in the gut of giant pandas. Front Microbiol. 9:1717.
  • Yuan X. 2005. China national fishery statistic and analysis in 2004. Fish Wealth Guide. 13:13–16.
  • Zhang YJ, Li S, Gan RY, Zhou T, Xu DP, Li HB. 2015. Impacts of gut bacteria on human health and diseases. Int J Mol Sci. 16:7493–7519.
  • Zhang JQ, Zhang L, Wang XC. 2017. Effects of rice culture and pond culture on the quality of Chinese mitten crab (Eriocheir sinensis). Sci Technol Food Ind. 38:229–236.