2,514
Views
2
CrossRef citations to date
0
Altmetric
Computational life sciences, Bioinformatics and System Biology

Network pharmacology and GEO database-based analysis of Sini powder in the prevention of depression among shift workers

, , , , , , , , , & show all
Pages 74-87 | Received 27 Jan 2021, Accepted 18 Nov 2021, Published online: 05 Jan 2022

References

  • Barrett T, Wilhite SE, Ledoux P, et al. Ncbi GEO: archive for functional genomics data sets–update. Nucleic Acids Res 2013; 41(Database issue):D991-D995
  • Boivin DB, Boudreau P. 2014. Impacts of shift work on sleep and circadian rhythms. Pathol Biol (Paris). 62(5):292–301.
  • Brown JP, Martin D, Nagaria Z, et al. 2020. Mental health consequences of shift work: An updated review. Curr Psychiatry Rep. 22(2):7.
  • Cao K. 2019. The effect on Sinisan on behavior and 5HT1R/CREB/BDNF pathway of maternal separation depressive model. Guangzhou, Guangdong, Guangzhou University of traditional Chinese Medicine.
  • Chen H, Gao M, Yu T. 2016. Clinical observation of Jiawei Sini powder combined with abdominal acupuncture in the treatment of post-stroke depression. Stroke and Nervous Diseases. 3(05):347–349.
  • Ferri P, Guadi M, Marcheselli L, et al. 2016. The impact of shift work on the psychological and physical health of nurses in a general hospital: a comparison between rotating night shifts and day shifts. Risk Manag Healthc Policy. 9:203–211.
  • Filipski E, King VM, Etienne MC, et al. 2004. Persistent twenty-four hour changes in liver and bone marrow despite suprachiasmatic nuclei ablation in mice. Am J Physiol Regul Integr Comp Physiol. 287(4):R844–R851.
  • Findikli E, Kurutas EB, Camkurt MA, et al. 2017. Increased serum g protein-coupled estrogen receptor 1 levels and its diagnostic value in drug naive patients with major depressive disorder. Clin Psychopharmacol Neurosci. 15(4):337–342.
  • Flo E, Pallesen S, Moen BE, et al: Short rest periods between work shifts predict sleep and health problems in nurses at 1-year follow-up. Occup Environ Med 2014;71(8):555-561
  • Gabbay V, Bradley KA, Mao X, et al. 2017. Anterior cingulate cortex γ-aminobutyric acid deficits in youth with depression. Transl Psychiatry. 7(8):e1216.
  • Hopkins AL. 2008. Network pharmacology: the next paradigm in drug discovery. Nat Chem Biol. 4(11):682–690.
  • Huang Y, Mahley RW. Apolipoprotein E: structure and function in lipid metabolism, neurobiology, and Alzheimer's diseases. Neurobiol Dis 2014; 72 Pt A:3-12
  • Karlsson IK, Bennet AM, Ploner A, et al. 2015. Apolipoprotein E epsilon4 genotype and the temporal relationship between depression and dementia. Neurobiol Aging. 36(4):1751–1756.
  • Kohl M, Wiese S, Warscheid B. 2011. Cytoscape: software for visualization and analysis of biological networks. Methods Mol Biol. 696:291–303.
  • Köhler CA, Freitas TH, Maes M, et al. 2017. Peripheral cytokine and chemokine alterations in depression: a meta-analysis of 82 studies. Acta Psychiatr Scand. 135(5):373–387.
  • König H, König HH, Konnopka A. 2019. The excess costs of depression: a systematic review and meta-analysis. Epidemiol Psychiatr Sci. 29:e30.
  • Li S, Wang M, Ao X, et al. 2013. Clock is a substrate of SUMO and sumoylation of CLOCK upregulates the transcriptional activity of estrogen receptor-α. Oncogene. 32(41):4883–4891.
  • Lv WJ, Liu C, Yu LZ, et al. 2020. Melatonin alleviates neuroinflammation and metabolic disorder in DSS-induced depression rats. Oxid Med Cell Longev. 1241894.
  • Man CF, Li C, Gong DD, et al. 2014. Meta-analysis of Chinese herbal Xiaoyao formula as an adjuvant treatment in relieving depression in Chinese patients. Complement Ther Med. 22:362–370.
  • Martin G: Diagnostic and statistical manual of mental disorders: DSM-5 (5th edition). Ref Rev 2014; 28(3).
  • Meltzer-Brody S, Kanes SJ. Allopregnanolone in postpartum depression: Role in pathophysiology and treatment. Neurobiol Stress 2020; 12:100212
  • Ng QX, Koh SSH, Chan HW, et al. 2017. Clinical use of curcumin in depression: a meta-analysis. J Am Med Dir Assoc. 18:503–508.
  • Ng QX, Lim DY, Chee KT. 2020. Reimagining the spectrum of affective disorders. Bipolar Disord. 22:638–639.
  • Ng QX, Venkatanarayanan N, Ho CYX. 2017. Clinical use of Hypericum perforatum (St John's wort) in depression: A meta-analysis. J Affect Disord. 210:211–221.
  • Potash JB: Carving chaos: genetics and the classification of mood and psychotic syndromes. Harvard Rev Psychiat 2006; 14(2):47-63
  • Rossetti S, Corlazzoli F, Gregorski A, et al. 2012. Identification of an strogen-regulated circadian mechanism necessary for breast acinar morphogenesis. Cell Cycle. 11(19):3691–3700.
  • Royston SE, Yasui N, Kondilis AG, et al. 2014. Esr1 and ESR2 differentially regulate daily and circadian activity rhythms in female mice. Endocrinology. 155:2613–2623.
  • Ryan J, Ancelin ML. 2012. Polymorphisms of estrogen receptors and risk of depression: therapeutic implications. Drugs. 72(13):1725–1738.
  • Schuster M, Oberlinner C, Claus M. 2019. Shift-specific associations between age, chronotype and sleep duration. Chronobiol Int. 36(6):784–795.
  • Seeliger D, de Groot BL. Ligand docking and binding site analysis with PyMOL and Autodock/Vina. Comput Aided Mol Des 2010; 24(5):417-422
  • Shannon P, Markiel A, Ozier O, et al. 2003. Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res. 13(11):2498–2504.
  • Skoog I, Waern M, Duberstein P. 2015. A 9-year prospective population-based study on the association between the APOE*E4 allele and late-life depression in Sweden. Biol Psychiatry. 78(10):730–736.
  • Sun KH, Jin Y, Mei ZG, et al. 2021. Antidepressant-like effects of Chaihu Shugan powder on rats exposed to chronic unpredictable mild stress through inhibition of endoplasmic reticulum stress-induced apoptosis. Chin J Integr Med. 27(5):353–360.
  • Szklarczyk D, Gable AL, Lyon D, et al. 2019. String v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets. Nucleic Acids Res. 47:D607–D613.
  • Torquati L, Mielke GI, Brown WJ, et al. 2019. Shift work and poor mental health: a meta-analysis of longitudinal studies. Am J Public Health. 109:e13–e20.
  • Trott O, Olson AJ. 2010. Autodock vina: improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading. Comput Chem. 31(2):455–461.
  • Wang Y, Li C, Qiu Q, et al. 2016. Study of collaborative evaluation system on synergistic pharmacological effect of chinese formula with multi-compounds and multi-targets. Sci Sin Vitae. 46:1029–1032.
  • Weaver MD, Vetter C, Rajaratnam SMW, et al. Sleep disorders, depression and anxiety are associated with adverse safety outcomes in healthcare workers: A prospective cohort study. J Sleep Res 2018; 27(6):e12722
  • Wei SS, Yang HJ, Huang JW, et al. 2016. Traditional herbal formula Sini powder extract produces antidepressant-like effects through stress-related mechanisms in rats. Chin J Nat Med. 14:590–598.
  • Wyse CA, Celis Morales CA, Graham N, et al. 2017. Adverse metabolic and mental health outcomes associated with shiftwork in a population-based study of 277,168 workers in UK biobank. Ann Med. 49(5):411–420.
  • Xu X, Zhang W, Huang C, et al. 2012. A novel chemometric method for the prediction of human oral bioavailability. Int J Mol Sci. 13(6):6964–6982.
  • Yong LC, Li J. 2017. Calvert GM: Sleep-related problems in the US working population: prevalence and association with shiftwork status. Occup Environ Med. 74(2):93–104.
  • Zhang J, Chen L, Ma J. 2017. Interaction of estrogen receptor β and negative life events in susceptibility to major depressive disorder in a Chinese Han female population. J Affect Disord. 208:628–633.
  • Zhao ZX, Fu J, Ma SR, et al. 2018. Gut-brain axis metabolic pathway regulates antidepressant efficacy of albiflorin. Theranostics. 8(21):5945–5959.
  • Zhou Y, Zhou B, Pache L, et al. 2019. Metascape provides a biologist-oriented resource for the analysis of systems-level datasets. Nat Commun. 10(1):1523.
  • Zuo K, et al. 2007. To establish Caco-2 cell model and application of Caco-2 cell model in research of absorption. Wuhan, Hubei: Huazhong University of Science and Technology.