12
Views
3
CrossRef citations to date
0
Altmetric
Research Article

Evaluation of a polymerase chain reaction reverse hybridization line probe assay for the detection and identification of medically important fungi in bronchoalveolar lavage fluids

, , , , &
Pages 65-74 | Published online: 09 Jul 2009

References

  • Musial CE, Cockerill FR, Roberts GD. Fungal infections of the immunocompromised host: clinical and laboratory aspects. Clin Microbiol Rev 1988; 1: 349–364.
  • Reiss E, Tanaka K, Bruker G, et al. Molecular diagnosis and epidemiology of fungal infections. Med Mycol 1998; 36 (Suppl. 1): 249–257.
  • Meyers JD. Fungal infections in bone marrow transplant patients. Semin Oncol 1990; 17: 10–13.
  • Manuel RI, Kibbler CC. The epidemiology and prevention of invasive aspergillosis. J Hosp Infect 1998; 39: 95–109.
  • Ellis M, Richardson M, de Pauw B. Epidemiology. Hosp Med 2000; 61: 605–609.
  • Richardson MD. Opportunistic and pathogenic fungi. J Anti-microb Chemother 1991; 28 (Suppl. A): 1–111.
  • Warnock DW. Fungal infections in neutropenia: current problems and chemotherapeutic control. J Antimicrob Che-mother 1998; 41 (Suppl. D): 95–105.
  • Fraser VJ, Jones M, Dunkel J, et al. Candidemia in a tertiary care hospital: epidemiology, risk factors, and predictors of mortality. Clin Infect Dis 1992; 15: 414–421.
  • Walsh TJ, Chanock SJ. Diagnosis of invasive fungal infections: advances in nonculture systems. Curr Clin Top Infect Dis 1998; 18: 101–153.
  • Moter A, Gobel UB. Fluorescence in situ hybridization (FISH) for direct visualization of microorganisms. J Microbiol Methods 2000; 41: 85–112.
  • Kempf VA, Trebesius K, Autenrieth IB. Fluorescent in situ hybridization allows rapid identification of microorganisms in blood cultures. J Clin Microbiol 2000; 38: 830–838.
  • Bodey GP. The emergence of fungi as major hospital pathogens. J Hosp Infect 1988; 11 (Suppl A): 411–426.
  • Duthie R, Denning DW. Aspergillus fungemia: report of two cases and review. Clin Infect Dis 1995; 20: 598–605.
  • Hopfer RL. Use of molecular biological techniques in the diagnostic laboratory for detecting and differentiating fungi. Arch Med Res 1995; 26: 287–292.
  • Reiss E, Morrison CJ. Nonculture methods for diagnosis of disseminated candidiasis. Gun Microbiol Rev 1993; 6: 311–323.
  • Einsele H, Hebart H, Roller G, et al. Detection and identifica-tion of fungal pathogens in blood by using molecular probes. J Gun Microbiol 1997; 35: 1353–1360.
  • Sandhu GS, Kline BC, Stockman L, et al. Molecular probes for diagnosis of fungal infections. J Gun Microbiol 1995; 33: 2913–2919.
  • Zhao J, Kong F, Li R, et al. Identification of Aspergillus fumigatus and related species by nested PCR targeting ribosomal DNA internal transcribed spacer regions. J Gun Microbiol 2001; 39: 2261–2266.
  • Turenne CY, Sanche SE, Hoban DJ, et al. Rapid identification of fungi by using the ITS2 genetic region and an automated fluorescent capillary electrophoresis system. J Clin Microbiol 1999; 37: 1846-1851.
  • Skladny H, Buchheidt D, Baust C, et al. Specific detection of Aspergillus species in blood and bronchoalveolar lavage samples of immunocompromised patients by two-step PCR. J Gun Microbiol 1999; 37: 3865–3871.
  • Shin JH, Nolte FS, Morrison CJ. Rapid identification of Candida species in blood cultures by a clinically useful PCR method. J Gun Microbiol 1997; 35: 1454–1459.
  • Rabodonirina M, Cotte L, Boibieux A, et al. Detection of Pneumocystis carinii DNA in blood specimens from human immunodeficiency virus-infected patients by nested PCR. J Gun Microbiol 1999; 37: 127–131.
  • Hue FX, Huerre M, Rouffault MA, et al. Specific detection of Fusarium species in blood and tissues by a PCR technique. J Gun Microbiol 1999; 37: 2434–2438.
  • Löffler J, Hebart H, Sepe S, et al. Detection of PCR-amplified fungal DNA by using a PCRELISA system. Med Mycol 1998; 36: 275–279.
  • Park S, Wong M, Marras SA, et al. Rapid identification of Candida dubliniensis using a species-specific molecular beacon. J Gun Microbiol 2000; 38: 2829–2836.
  • Hendolin PH, Paulin L, Koukila-Kähkölä P, et al. Panfun-gal PCR and multiplex liquid hybridization for detection of fungi in tissue specimens. J Clin Microbiol 2000; 38: 4186–4192.
  • Martin C, Roberts D, van Der Weide M, et al. Development of a PCR-based line probe assay for identification of fungal pathogens. J Gun Microbiol 2000; 38: 3735–3742.
  • Melchers WJ, Verweij PE, van den Hurk P, et al. General primer-mediated PCR for detection of Aspergillus species. J Gun Microbiol 1994; 32: 1710–1717.
  • van Bunk JA, Schreckhise RW, White TC, et al. Comparison of six extraction techniques for isolation of DNA from filamentous fungi. Med Mycol 1998; 36: 299–303.
  • Fletcher HA, Barton RC, Verweij PE, et al. Detection of Aspergillus fumigatus PCR products by a microtitre plate based DNA hybridisation assay. J Gun Pathol 1998; 51: 617–620.
  • Boom R, Sol CJ, Salimans MM, et al. Rapid and simple method for purification of nucleic acids. J Gun Microbiol 1990; 28: 495–503.
  • Wahyuningsih R, Freisleben HJ, Sonntag HG, et al. Simple and rapid detection of Candida albicans DNA in serum by PCR for diagnosis of invasive candidiasis. J Gun Microbiol 2000; 38: 3016–3021.
  • Morace G, Sanguinetti M, Posteraro B, et al. Identification of various medically important Candida species in clinical speci-mens by PCR-restriction enzyme analysis. J Clin Microbiol 1997; 35: 667–672.
  • Shin JH, Nolte FS, Holloway BP, et al. Rapid identification of up to three Candida species in a single reaction tube by a 5' exonuclease assay using fluorescent DNA probes. J Gun Microbiol 1999; 37: 165–170.
  • Yamakami Y, Hashimoto A, Tokimatsu I, et al. PCR detection of DNA specific for Aspergillus species in serum of patients with invasive aspergillosis. J Gun Microbiol 1996; 34: 2464–2468.
  • Miller N, Infante S, Cleary T. Evaluation of the LiPA MYCOBACTERIA assay for identification of mycobacterial species from BACTEC 12B bottles. J ClM Microbiol 2000; 38: 1915–1919.
  • Aberle SW, Kletzmayr J, Watschinger B, et al. Comparison of sequence analysis and the INNO-LiPA HBV DR line probe assay for detection of lamivudine-resistant hepatitis B virus strains in patients under various clinical conditions. J ClM Microbiol 2001; 39: 1972–1974.
  • Puchhammer-Stöckl E, Schmied B, Mandl CW, et al. Compar-ison of line probe assay (L1PA) and sequence analysis for detection of HIV-1 drug resistance. J Med Virol 1999; 57: 283–289.
  • Melchers WJ, Bakkers JM, Wang J, et al. Short fragment polymerase chain reaction reverse hybridization line probe assay to detect and genotype a broad spectrum of human papillomavirus types. Clinical evaluation and follow-up. Am J Pathol 1999; 155: 1473–1478.
  • Hirano K, Abe C, Takahashi M. Mutations in the rpoB gene of rifampin-resistant Mycobacterium tuberculosis strains isolated mostly in Asian countries and their rapid detection by line probe assay. J ClM Microbiol 1999; 37: 2663–2666.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.