REFERENCES
- Clark AG , Weiss KM , Nickerson DA , Taylor SL , Buchanan A , Stengard J , Salomaa V , Vartiainen E , Perola M , Boerwinkle E , Sing CF . Haplotype structure and population genetic inferences from nucleotide-sequence variation in human lipoprotein lipase . Am J Hum Genet 1998 ; 63 ( 2 ): 595 – 612 . [PUBMED] [INFOTRIEVE] [CSA]
- Rieder MJ , Taylor SL , Clark AG , Nickerson DA . Sequence variation in the human angiotensin converting enzyme . Nat Genet. 1999 ; 22 ( 1 ): 59 – 62 . [PUBMED] [INFOTRIEVE] [CROSSREF]
- Moffatt MF , Traherne JA , Abecasis GR , Cookson Wo . Single nucleotide polymorphism and linkage disequilibrium within the TCR alpha/delta locus . Hum Mol Genet 2000 ; 12; 9 ( 7 ): 1011 – 9 . [PUBMED] [INFOTRIEVE] [CSA] [CROSSREF]
- Templeton AR , Clark AG , Weiss KM , Nickerson DA , Boerwinkle E , Sing CF . Recombinational and mutational hotspots within the human lipoprotein lipase gene . Am J Hum Genet 2000 ; 66 ( 1 ): 69 – 83 . [PUBMED] [INFOTRIEVE] [CSA] [CROSSREF]
- Dunning AM , Durocher F , Healey CS , Teare MD , McBride SE , Carlomagno F , Xu CF , Dawson E , Rhodes S , Ueda S , Lai E , Luben RN , Van Rensburg EJ , Mannermaa A , Kataja V , Rennart G , Dunham I , Purvis I , Easton D , Ponder BA . The extent of linkage disequilibrium in four populations with distinct demographic histories . Am J Hum Genet 2000 ; 67 ( 6 ): 1544 – 54 . [PUBMED] [INFOTRIEVE] [CSA] [CROSSREF]
- Bonfield JK , Staden R . Experiment files and their application during large-scale sequencing projects . DNA Seq 1996 ; 6 ( 2 ): 109 – 17 . [PUBMED] [INFOTRIEVE] [CSA]
- Bonfield JK , Smith K , Staden R . A new DNA sequence assembly program . Nucleic Acids Res 1995 ; 23 ( 24 ): 4992 – 9 . [PUBMED] [INFOTRIEVE]
- Goddard KA , Hopkins PJ , Hall JM , Witte JS . Linkage disequilibrium and allele-frequency distributions for 114 single-nucleotide polymorphisms in five populations . Am J Hum Genet 2000 ; 66 ( 1 ): 216 – 34 . [PUBMED] [INFOTRIEVE] [CSA] [CROSSREF]
- Kidd JR , Pakstis AJ , Zhao H , Lu RB , Okonofua FE , Odunsi A , Grigorenko E , Tamir BB , Friedlaender J , Schulz LO , Parnas J , Kidd KK . Haplotypes and linkage disequilibrium at the phenylalanine hydroxylase locus, PAH, in a global representation of populations . Am J Hum Genet 2000 ; 66 ( 6 ): 1882 – 99 . [PUBMED] [INFOTRIEVE] [CSA] [CROSSREF]
- Reich DE , Cargill M , Bolk S , Ireland J , Sabeti PC , Richter DJ , Lavery T , Kouyoumjian R , Farhadian SF , Ward R , Lander ES . Linkage disequilibrium in the human genome . Nature 2001 ; 411 ( 6834 ): 199 – 204 . [PUBMED] [INFOTRIEVE] [CROSSREF]
- Janss LL , Van Arendonk JA , Brascamp EW . Segregation analyses for presence of major genes affecting growth, backfat, and litter size in Dutch Meishan crossbreds . J Anim Sci 1997 ; 75 ( 11 ): 2864 – 76 . [PUBMED] [INFOTRIEVE]
- Ewing B , Green P . Base-calling of automated sequencer traces using phred . II. Error probabilities. Genome Res 1998 ; 8 ( 3 ): 186 – 94 .
- Ewing B , Hillier L , Wendl MC , Green P . Base-calling of automated sequencer traces using phred . I. Accuracy assessment. Genome Res 1998 ; 8 ( 3 ): 175 – 85 .
- Aerts JA , Jungerius BJ , Groenen MA . POSA: perl objects for DNA sequencing data analysis . BMC Genomics 2004 ; 5(1):60.
- Sobel E , Lange K . Descent graphs in pedigree analysis: applications to haplotyping, location scores, and marker-sharing statistics . Am J Hum Genet 1996 ; 58 ( 6 ): 1323 – 37 . [PUBMED] [INFOTRIEVE] [CSA]
- Nei M , Li WH . Mathematical model for studying genetic variation in terms of restriction endonucleases . Proc Natl Acad Sci U S A. 1979 ; 76 ( 10 ): 5269 – 73 . [PUBMED] [INFOTRIEVE]
- Fahrenkrug SC , Freking BA , Smith TP , Rohrer GA , Keele JW . Single nucleotide polymorphism (SNP) discovery in porcine expressed genes . Anim Genet 2002 ; 33 ( 3 ): 186 – 95 . [PUBMED] [INFOTRIEVE] [CROSSREF]
- Jungerius BJ , Rattink AP , Crooijmans RP , van der Poel JJ , van Oost BA , te Pas MF , Groenen MA . Development of a single nucleotide polymorphism map of porcine chromosome 2 . Anim Genet 2003 ; 34 ( 6 ): 429 – 37 . [PUBMED] [INFOTRIEVE] [CROSSREF]
- Kruglyak L . Prospects for whole-genome linkage disequilibrium mapping of common disease genes. Nat Genet 1999; 22(2):139–44. [PUBMED] [INFOTRIEVE] [CROSSREF]
- Ardlie KG , Kruglyak L , Seielstad M . Patterns of linkage disequilibrium in the human genome . Nat Rev Genet 2002 ; 3 ( 4 ): 299 – 309 . [PUBMED] [INFOTRIEVE] [CSA] [CROSSREF]
- Devlin B , Risch N . A comparison of linkage disequilibrium measures for fine-scale mapping . Genomics. 1995 ; 29 ( 2 ): 311 – 22 . [PUBMED] [INFOTRIEVE] [CSA] [CROSSREF]
- Pritchard JK , Przeworski M . Linkage disequilibrium in humans: models and data . Am J Hum Genet. 2001 ; 69 ( 1 ): 1 – 14 . [PUBMED] [INFOTRIEVE] [CSA] [CROSSREF]
- Weiss KM , Clark AG . Linkage disequilibrium and the mapping of complex human traits . Trends Genet. 2002 ; 18 ( 1 ): 19 – 24 . [PUBMED] [INFOTRIEVE] [CSA] [CROSSREF]
- Nsengimana J , Baret P , Haley CS , Visscher PM . Linkage disequilibrium in the domesticated pig . Genetics. 2004 ; 166 ( 3 ): 1395 – 404 . [PUBMED] [INFOTRIEVE] [CSA] [CROSSREF]