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Research Article

BIOLOGICAL LIBRARIES*

Pages 447-468 | Published online: 30 Nov 2001

REFERENCES

  • Smith G. P. Filamentous Fusion Phage: Novel Expression Vectors That Display Cloned Antigens on the Virion Surface. Science 1985; 228: 1315–1317
  • Georgiou G., Stathopoulos C., Daugherty P. S., Nayak A. R., Iverson B. L., Curtiss R., III. Display of Heterologous Proteins on the Surface of Microorganisms: from the Screening of Combinatorial Libraries to Live Recombinant Vaccines. Nat. Biotechnol. 1997; 15: 29–34
  • Kretzschmar T., Geiser M. Evaluation of Antibodies Fused to Minor Coat Protein III and Major Coat Protein VIII of Bacteriophage M13. Gene 1995; 155: 61–65
  • Clackson T., Wells J. A. In Vitro Selection from Protein and Peptide Libraries. Trends Biotechnol. 1994; 12: 173–184
  • Maruyama I. N., Maruyama H. I., Brenner S. λfoo: A Phage Vector for the Expression of Foreign Proteins. Proc. Natl. Acad. Sci. 1994; 91: 8273–8277
  • Stemberg N., Hoess H. Display of Peptides and Proteins on the Surface of Bacteriophage λ. Proc. Natl Acad. Sci. USA 1995; 92: 1609–1613
  • Efimov V. P., Nepluev I. V., Mesyanzhinov V. V. Bacteriophage T4 as a Surface Display Vector. Virus Genes 1995; 10: 173–177
  • Carbonell X., Villaverde A. Peptide Display on Functional Tailspike Protein of Bacteriophage P22. Gene 1996; 176: 225–229
  • Stahl S., Uhlén M. Bacterial Surface Display: Trends and Progress. Trends Biotechnol. 1997; 15: 185–192
  • Steidler L., Remaut E., Fiers W. LamB as a Carrier Molecule for the Functional Exposition of IgG-Binding Domains of the Staphylococcus aureus Protein A at the surface of Escherichia coli K12. Mol. Gen. Genet. 1993; 236: 187–192
  • Charbit A., Molla A., Saurin W., Hofnung M. Versatility of a Vector for Expressing Foreign Polypeptides at the Surface of Gram-Negative Bacteria. Gene 1988; 70: 181–189
  • Hobom G., Arnold N., Ruppert A. OmpA Fusion Proteins for presentation of Foreign Antigens on the Bacterial Outer Membrane. Dev. Biol. Stand 1995; 84: 255–262
  • Freudl R., MacIntyre S., Degen M., Henning U. Cell Surface Exposure of the Outer Membrane Protein OmpA of Escherichia coli K-12. J. Mol. Biol. 1986; 188: 491–494
  • Harrison J. L., Taylor I. M., O'Connor C. D. Presentation of Foreign Antigenic Determinants of the Bacterial Cell Surface Using the TraT lipoprotein. Res. Microbiol. 1990; 141: 1009–1012
  • Fuchs P., Breitling F., Dübel S., Seehaus T., Little M. Targeting Recombinant Antibodies to the surface of E. coli: Fusion to a Peptidoglycan Associated Lipoprotein. Biotechnology 1991; 9: 1369–1372
  • Francisco J. A., Stathopoulos C., Warren R. A.J., Kilbum D. G., Georgiou G. Specific Adhesion and Hydrolysis of Cellulose by Intact Escherichia coli Expressing Surface Anchored Cellulase or Cellulose Binding Domains. Biotechnology 1993; 11: 491–495
  • Hedegaard K., Klemm P. Type 1 Fimbriae of Escherichia coli as Carriers of Heterologous Antigenic Sequences. Gene 1989; 85: 115–124
  • Pallesen L., Poulsen L. K., Christiansen G., Klemm P. Chimeric FimH Adhesion of Type 1 Fimbriae: A Bacterial Surface Display System for Heterologous Sequences. Microbiology 1995; 141: 2839–2848
  • Van Die I., Wauben M., Van Megen I., et al. Genetic Manipulation of Major P-Fimbrial Subunits and Consequences for Formation of Fimbriae. J. Bacteriol. 1988; 170: 5870–5876
  • Lu Z., Murray K. S., Van Cleave V., laVallie E. R., Stahl M. L., McCoy J. M. Expression of Thioredoxin Random Peptide Libraries on the Escherichia coli Cell Surface as Functional Fusions to Flagellin: A System Designed for Exploring Protein–Protein Interactions. Biotechnology 1995; 13: 366–372
  • Leary J. F. Strategies for Rare Cell Detection and Isolation. Method Cell Biol. 1994; 42: 331–358
  • Fuchs P., Weichel W., Dubel S., Breitling F., Little M. Separation of E. coli Expressing Functional Cell-Wall Antibody Fragments By FACS. Immunotechnology 1996; 2: 97–102
  • Schreuder M. P., Mooren A. T.A., Toschka H. Y., Verrips C. Y., Kls F. M. Immobilizing Proteins on the Surface of Yeast cells. Trends Biotechnol. 1996; 14: 115–120
  • Boder E. T., Wittrup D. Yeast Surface Display for Screening Combinatorial Polypeptide Libraries. Nat. Biotechnol. 1997; 15: 553–557
  • Paush M. G-protein-Coupled Receptors in Saccharomyces cerevisiae: High-Throughput Screening assays for Drug Discovery. Trends Biotechnol. 1997; 15: 487–494
  • Poijak R. J., Amzel L. M., Chen B. L., Phizackerley R. P., Saul F. The Three-Dimentional Structure of the Fab' Fragment of a Human Myeloma Immunoglobulin at 2.0-Angstrom Resolution. Proc. Natl. Acad. Sci. USA 1974; 71: 3440–3444
  • Tonegawa S. Somatic Generation of Antibody Diversity. Nature 1983; 302: 575–581
  • Hoogenboom H. R. Designing and Optimizing Library Selection Strategies for Generating High-Affinity Antibodies. Trends Biotechnol. 1997; 15: 62–70
  • Winter G., Griffiths A. D., Hawkins R. E., Hoogenboon H. R. Making Antibodies by Phage Display Technology. Ann. Rev. Immunol. 1994; 12: 433–455
  • De Kruif J, Terstappen L., Boel E, Logtenberg T. Rapid Selection of Cell Subpopulation-apecific Human Monoclonal Antibodies from a Synthetic Phage Antibody Library. Proc. Natl. Acad. Sci. USA 1995; 92: 3938–3942
  • Tanha J., Forsyth G., Schorr P, Crosby W, Lee J. S. Sequence and Structure Specific Antibodies from Phage Display Libraries. Mol. Immunol. 1997; 34: 109–113
  • Chowdhury P. S., Chang K., Pastan I. Isolation of Anti-Mesothelin Antibodies from a Phage Display Library. Mol. Immunol. 1997; 34: 9–20
  • Chan S. W., Bye J. M., Jackson P, Allain J. P. Human Recombinant Antibodies Specific for Hepatitis C Virus Core and Envelope E2 Peptides from an Immune Phage Display Library. J. Gen. Virol. 1996; 77: 2531–2539
  • Yang W. P., Green K., Pinz-Sweeney S., Briones A. T.B., Barbas C. F. CDR Walking Mutagenesis for the Affinity Maturation of a Potent Human Anti-HIV1 Antibody into the Picomolar Range. J. Mol. Biol. 1995; 254: 392–403
  • Schier L, McCall A, Adams G. P., et al. Isolation of Picomolar Affinity Anti-c-erbB2 Single-Chain Fv By Molecular Evolution of the Complementarity Determining Regions in the Center of the Antibody Binding Site. J. Mol. Biol. 1996; 263: 551–567
  • Schumacher T. N.M., Mayr L. M., Minor D. L., Milhollen M. A., Burgess M. W., Kim P. S. Identification of D-Peptide Ligands through Mirror-Image Phage Display. Science 1996; 271: 1854–1857
  • Leclerc C., Charbit A., Martineau P., Deriaud E., Hofnung M. The Cellular Location of a Foreign B Cell Epitope expressed by Recombinant Bacteria Determines its T Cell-Independent or T Cell-Dependent Characteristics. J. Immunol. 1991; 147: 3545–3552
  • Nguyen T. N., Hansson M., Stahl S., et al. Cell-Surface Display of Heterologous Epitopes on Staphylococcus xylosus as a Potential Delivery System for Oral Vaccination. Gene 1993; 128: 89–94
  • Wu J. Y., Newton S., Judd A., Stocker B., Robinson W. S. Expression of Immunogenic Epitopes of Hepatitis B Surface Antigen with Hybrid Flagellin Proteins by a Vaccine Strain of Salmonella. Proc. Nati. Acad. Sci. USA 1989; 86: 4726–4730
  • Newton S. M.C., Jacob C. O., Stocker B. A.D. Immune Response to Cholera Toxin Epitope inserted in Salmonella Flaggelin. Science 1989; 244: 70–72
  • Poirier T. P., Kehoc M. A., Beachey E. H. Protective Immunity Evoked by Oral Administration of Attenuated Aroa Salmonella typhimurium Expressing Cloned Streptococcal M Protein. J. Exp. Med. 1988; 1968: 25–32
  • Schorr J., Knapp B., Hundt E., Kupper H. A., Amann B. Surface Expression of Malarial Antigens in Salmonella typhimurium: Induction of Serum Antibody Response Upon Oral Vaccination of Mice. Vaccine 1991; 9: 675–681
  • Folgori A., Tafi R., Meola A., et al. A General Strategy to Identify Mimotopes of Pathological Antigens Using Only Random Peptide Libraries and Human Sera. EMBO J. 1994; 13: 2236–2243
  • Pasqualini R., Ruoslabti B. Organ Targeting In Vivo Using Phage Display Peptide Libraries. Nature 1996; 380: 364–366
  • Pasqualini R., Koivunen E., Ruoslahti E. αv Integrins as Receptors for Tumor targeting by Circulating Ligands. Nat. Biotechnol. 1997; 15: 542–546
  • Neri D., Carnemolla B., Nissim A., et al. Targeting by Affinity-Matured Recombinant Antibody fragments of an Angiogenesis Associated Fibronectin Isoform. Nat. Biotechnol. 1997; 15: 1271–1275
  • Arap W., Pasqualini R., Ruoslabti E. Cancer treatment by Targeted Drug Delivery to Tumor Vasculature in a Mouse Model. Science 1998; 279: 377–380
  • Jacobsson K., Frykberg L. Cloning of Ligand-Binding Domains of Bacterial Receptors by Phage Display. Bio Techniques 1995; 18: 878–885
  • Jacobsson K., Frykberg L. Phage Display Shot-Gun Cloning of Ligand Binding Domains of Prokaryotic Receptors Approaches 100% Correct Clones. BioTechniques 1996; 20: 1070–1081
  • Sampath A., Abrol S., Chaudhary V. K. Versatile Vectors for Direct Cloning and Ligation-Independent Cloning of PCR-Amplified Fragments for Surface Display on Filamentous Bacteriophages. Gene 1997; 190: 5–10
  • Crameri R., Hemmann S., Blaser K. pJuFo: A Phagemid for Display of cDNA Libraries on Phage Surface Suitable for Selective Isolation of Clones Expressing Allergens. Adv. Exp. Med. Biol. 1996; 409: 103–110
  • Jespers L. S., De Keyser A., Stanssens P. E. Lambda ZLG6: A Phage Lambda Vector for High-Efficiency Cloning and Surface Expression of cDNA Libraries on Filamentous Phage. Gene 1996; 173: 179–181
  • Light J., Maki R., Assa-Munt N. Expression Cloning of cDNA by Phage Display Selection. Nucleic Acids Res. 1996; 21: 4367–4368
  • Roberts B. L., Markland W., Siranosian K., Saxena M. J., Guterman S. K., Ladner R. C. Protease Inhibitor Display M13 Phage: Selection of High-Affinity Neutrophil Elastase Inhibitors. Gene 1992; 121: 9–15
  • Pannekoek H., van Meijer M., Schleef R. R., Loskutoff D. J., Barbas C. D. Functional Display of Human Plasminogen-Activator Inhibitor 1 (PAI-1) on Phages: Novel Perspectives for Structure-Function Analysis by Error-Prone DNA Synthesis. Gene 1993; 128: 135–140
  • Abrol S., Sampash A., Arora K., Chaudhary V. K. Construction and Characterization of M13 Bacteriophages Displaying gp 120 Binding Domains of Human CD4. Indian J. Biochem. Biophys. 1994; 31: 302–309
  • Chiswell D. J., McCafferty J. Phage Antibodies: Will New “Coliclonal” Antibodies Replace Monoclonal Antibodies. Trends Biotechnol. 1992; 10: 80–84
  • Robertson M. W. Phage and Escherichia coli Expression of the Human High Affinity Immunoglobulin E Receptor α-Subunit Ectodomain. Domain Localization of the IgE-Binding Site. J. Biol. Chem. 1993; 268: 12736–12743
  • Scarselli E., Esposito G., Traboni C. Receptor Phage. Display of Functional Domains of the Human High Affinity IgE Receptor on the M13 Phage Surface. FEBS Lett. 1993; 329: 223–226
  • Djojonegoro B. M., Benedik M. J., Willson R. C. Bacteriophage Surface Display of an Immunoglobulin-Binding Domain of Staphylococcus aureus Protein A. BioTechnology 1994; 12: 169–172
  • Kushwaha A., Chowdhury P. S., Arora K., Abrol S., Chaudhary V. K. Construction and Characterization of M13 Bacteriophages Displaying Functional IgG-Binding Domains of Staphylococcal Protein A. Gene 1994; 151: 45–51
  • Corey D. R., Shiau A. K., Yang Q., Janowski B. A., Craik C. S. Trypsin Display on the Surface of Bacteriophage. Gene 1993; 128: 129–134
  • Crameri R., Suter M. Display of Biologically Active Proteins on the Surface of Filamentous Phages: A cDNA Cloning System for Selection of Functional Gene Products Linked to the Genetic Information Responsible for Their Production. Gene 1993; 137: 69–75
  • McCafferty J., Jackson R. H., Chiswell D. J. Phage-Enzymes: Expression and Affinity Chromatography of Functional Alkaline Phosphatase on the Surface of Bacteriophage. Protein Eng. 1992; 4: 955–961
  • Soumillon P., Jespers L., Bouchet M., Marchand-Btynaert J., Winter G., Fastrez J. Selection of Besa-Lactamase on Filamentous Bacteriophage by Catalytic Activity. J. Mol. Biol. 1994; 237: 415–422
  • Light J., Lerner R. A. Random Mutagenesis of Staphylococcal Nuclease and Phage Display Selection. Bioorg. Med. Chem. 1995; 3: 955–967
  • Cabibbo A., Sporeno E., Toniatti C., et al. Monovalent Phage Display of Human Interleukin (hIL)-6: Selection of Superbinder Variants from a Complex Molecular Repertoire on the hIL-6 D-Helix. Gene 1995; 167: 41–47
  • Gram H., Strittmatter U., Lorenz M., Gluck D., Zenke G. Phage Display as a Rapid Gene Expression System: Production of Bioactive Cytokine-Phage and Generation of Neutralizing Monoclonal Antibodies. J. Immunol. Meth. 1993; 161: 169–176
  • Bass S., Greene R., Wells J. A. Hormone Phage: An Enrichment Method for Variant Proteins With Altered Binding Properties. Proteins 1990; 8: 309–314
  • Lowman H. B., Wells J. A. Affinity Maturation of Human Growth Hormone by Monovalent Phage Display. J. Mol. Biol. 1993; 234: 564–578
  • Francisco J. A., Earhart C. F., Georgiou G. Transport and Anchoring of β-Lactamase to the External Surface of Escherichia coli. Proc. Natl. Acad. Sci. USA 1992; 89: 2713–2717
  • O'Brien S. M., Sloane R. P., Thomas O. R., Dunnill P. Characterization of Non Porous Magnetic Chelator Supports and Their Use to Recover Polyhistidine-Tailed T4 Lysozyme from a Crude E. coli Extract. J. Biotechnol. 1997; 54: 53–67
  • Chen G., Cloud J., Georgiou G., Iverson B. L. A Quantitative Immunoassay Utilizing Escherichia coli Cells Possessing Surface Exposed Single Chain Fv Molecules. Biotechnol. Progr. 1969; 12: 572–574
  • Freeman A., Abramov S., Georgiou G. Fixation and Stabilization of E. coli Cells Displaying Genetically Engineered Cell Surface Proteins. Biotechnol. Bioeng. 1996; 52: 625–630
  • Couet J., Li S., Okamoto T., Ikezu T., Lisanti M. P. Identification of Peptide and Protein Ligands for the Caveolin-Scaffolding Domain. J. Biol. Chem. 1997; 272: 6525–6533
  • Li M. Use of a Modified Bacteriophage to probe the Interactions between Peptides and Ion Channel Receptors in Mammalian Cells. Nat. Biotechnol. 1997; 15: 559–563
  • Gram H., Schmitz R., Zuber J. F., Baumann G. Identification of Phosphopeptide Ligands for the Src-homology 2 (SH2) Domain of Grb 2 by Phage Display. Eur. J. Biochem. 1997; 246: 633–637
  • Mukhija S., Erni B. Phage Display Selection of Peptides Against Enzyme I of the Phosphoenolpyruvate-sugar Phosphotransferase system. Mol. Microbiol. 1997; 25: 1159–1166
  • Balass M., Heldman Y., Cabilly S., Givol D., Katchalski-Katzir E., Fuchs S. Identification of a Hexapeptide That Mimics a Conformation-Dependent Binding Site of Acetylcholine Receptor by Use of a Phage-Epitope Library. Proc. Natl. Acad. Sci. USA 1993; 90: 10,638–10,642
  • Gaynor B., Putterman C., Valdon P., Spatz L., Scharff M. D., Diamond B. Peptide Inhibition of Glomerular Deposition of an Anti-DNA Antibody. Proc. Natl. Acad. Sci. USA 1997; 94: 1955–1960
  • Nord K., Gunneriusson B., Ringdahi J., Stahl S., Uhlen M., Nygren P. Binding Proteins Selected from Combinatorial Libraries of an α-helical Bacterial Receptor Domain. Nat. Biotechnol. 1997; 15: 772–777
  • Zhao S., Lee E. Y. A Protein Phosphatase-1-binding Motif identified by the Panning of a Random Peptide Display Library. J. Biol. Chem. 1997; 272: 28368–28372
  • Sato A., Ida N., Fukuyama M., Miwa K., Kazami J., Nakamura H. Identification from a Phage Display Library of Peptides That Bind to Toxic Shock Syndrome Toxin-I and That Inhibit its Binding to Major Histocompatibility Complex (MHC) Class II Molecules. Biochemistry 1996; 35: 10,441–10,447
  • Yanofsky S. D., Baldwin D. N., Butler J. H., et al. High Affinity Type I Interleukin 1 Receptor Antagonists Discovered by Screening Recombinant Peptide Libraries. Proc. Natl. Acad. Sci. USA 1996; 93: 7381–7386
  • Markland W., Ley A. C., Ladner R. C. Iterative Optimization of High-Affinity Protease Inhibitors Using Phage Display. 2. Plasma Kallikrein and Thrombin. Biochemistry 1996; 35: 8058–8067
  • Liu G., Bryant R. T., Hilderman R. H. Isolation of a Tripeptide from a Random Phage Peptide Library That Inhibits P1,P4-diadenosine 5′-Tetraphosphate Binding to its Receptor. Biochemistry 1996; 35: 197–201
  • Wrighton N. C., Farrel F. X., Chang R., et al. Small Peptides as Potent Mimetics of the Protein Hormone Erythropoietin. Science 1996; 273: 458–463
  • Bunnel S. C., Henry P. A., Kolluri R., Kirchhausen T., Rickies R. J., Berg L. J. Identification of Itk/Tsk Src Homology 3 Domain Ligands. J. Biol. Chem. 1996; 271: 25,646–25,656
  • Giebel L. B., Cass R. T., Milligan D. L., Young D. C., Arze R., Johnson C. R. Screening of Cyclic Peptide Phage Libraries Identifies Ligands That Bind Streptavidin with High Affinities. Biochemistry 1995; 34: 15,430–15,435
  • Pasqualini R., Koivunen E., Ruoslahti E. A Peptide Isolated from Phage Display Libraries is a Structural and Functional Mimic of An RGD-binding Site on Integrins. J. Cell Biol. 1995; 130: 1189–1196
  • Koivunen E., Wang B., Ruoslahti E. Phage Libraries Displaying Cyclic Peptides with Different Ring Sizes: Ligand Specificities of the RGD-Directed Integrins. Biotechnology 1995; 13: 265–270
  • Healy J. M., Murayama O., Maeda T., Yoshino K., Sekiguchi K., Kikuchi M. Peptide Ligands for Integrin αvβ3 Selected from Random Phage Display Libraries. Biochemistry 1995; 34: 3948–3955
  • Koivunen E., Gay D. A., Ruoslahti E. Selection of Peptides Binding to the α5β1 Integrin from Phage Display Library. J. Biol. Chem. 1993; 268(27)20205–20210
  • Castaño A. R., Tangri S., Miller J. E.W., et al. Peptide Binding and Presentation by Mouse CD1. Science 1995; 269: 223–226
  • Cheng X., Juliano R. L. Identification of a Biologically significant DNA-Binding Peptide Motif by Use of a Random Phage Display Library. Gene 1996; 171: 1–8
  • Krook M., Mosbach K., Lindbladh C. Selection of Peptides with Affinity for Single-Stranded DNA Using a Phage Display Library. Biochem. Biophys. Res. Commun. 1994; 204(2)849–854
  • Dyson M. R., Murray K. Selection of Peptide Inhibitors of Interactions involved in Complex Protein Assemblies: Association of the Core and Surface Antigens of Hepatitis B Virus. Proc. Natl. Acad. Sci. USA 1995; 92: 2194–2198
  • Cheadle C., Ivashchenko Y., South V., et al. Identification of a Src SH3 Domain Binding Motif by screening a Random Phage Display Library. J. Biol. Chem. 1994; 269: 24034–24039
  • Sparks A. B., Quilliam L. A., Thorn J. M., Der C. J., Kay B. K. Identification and Characterization of Src SH3 Ligands from Phage-Displayed Random Peptide Libraries. J. Biol. Chem. 1994; 269(39)23853–23856
  • Renschler M. F., Bhatt R. R., Dower W. J., Levy R. Synthetic Peptide Ligands of the Antigen Binding Receptor Induce Programmed Cell Death in a Human B Cell Lyophoma. Proc. Natl. Acad. Sci. USA 1994; 91: 3623–3267
  • Daniels D. A., Lane D. P. The Characterization of p53 Binding Phage Isolated from Phage Peptide Display Libraries. J. Mol. Biol. 1994; 243: 639–652
  • Balass M., Katchalski-Katzir E., Fuchs S. The α-bungarotoxin Binding Site on the Nicotinic Acetylcholine Receptor: Analysis Using a Phage-Epitope Library. Proc. Natl. Acad. Sci. USA 1997; 94: 6054–6058
  • Smith G. P., Schultz D. A., Ladbury J. E. A Ribonuclease S-Peptide Antagonist discovered with a Bacteriophage Display Library. Gene 1993; 128: 37–42
  • Scott J. K., Loganathan D., Easley R. B., Gong X., Goldstein I. J. A Family of Concanavalin A-Binding Peptides from a Hexapeptide Epitope Library. Proc. Natl. Acad. Sci. USA 1992; 89: 5398–5402
  • Oldemburg K. R., Loganathan D., Goldstein I. J., Schultz P. G., Gallop M. A. Peptide Ligands for Sugar-Binding Protein Isolated from a Random Peptide Library. Proc. Natl. Acad. Sci. USA 1992; 89: 5393–5397
  • O'Neil K. T., Hoess R. H., Jackson S. A., Ramachandran N. S., Mousa S. A., DeGrado W. F. Identification of Novel Peptide Antagonists for GPIIb/IIIa from a Conformationally Constrained Phage Peptide Library. Proteins: Structure, Function Genet 1992; 14: 509–515
  • Markland W., Ley A. C., Lee S. W., Ladner R. C. Iterative Optimization of High-Affinity Protease Inhibitors Using Phage Display. I. Plasmin Biochemistry 1996; 35: 8045–8057

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