Detection of a Hop-Tolerance Gene horA Insertion Variant in Lactic Acid Bacteria That Results in a Truncated HorA Lacking the Walker B Motif Necessary for Transport Function

Literature Cited

• Alegra, M. T., Rodriguez, M. C., and Mesas, J. M. Transformation of Lactobacillus plantarum by electroporation with in vitro modified plasmid DNA. FEMS Microbiol. Lett. 241:73–77, 2004.
   Web of Science ®Google Scholar
• Alegre, M. T., Rodriguez, M. C., and Mesas, J. M. Characterization of pRS5: A theta-type plasmid found in a strain of Pediococcus pentosaceus isolated from wine that can be used to generate cloning vectors for lactic acid bacteria. Plasmid 61:130–134, 2009.
   Web of Science ®Google Scholar
• Altschul, S. F., Gish, W., Miller, W., Meyers, E. W., and Lipman, D. J. Basic Local Alignment Search Tool. J. Mol. Biol. 215:403–410, 1990.
   PubMed Web of Science ®Google Scholar
• Behr, J., Geissler, A. J., Preissler, P., Enhrenreich, A., Angelov, A., and Vogel, R. F. Identification of ecotype-specific marker genes for categorization of beer spoiling Lactobacillus brevis. Food Microbiol. 51:130–138, 2015.
   Web of Science ®Google Scholar
• Bergsveinson, J., Friesen, V., and Ziola, B. Transcriptome analysis of beer-spoiling Lactobacillus brevis BSO 464 during growth in degassed and gassed beer. Int. J. Food Microbiol. 235:28–35, 2016.
   Web of Science ®Google Scholar
• Bergsveinson, J., Friesen, V., Ewen, E., and Ziola, B. Genome sequence of rapid beer-spoiling isolate Lactobacillus brevis BSO 464. Gen. Announ. 3:e01411–e01415, 2015.
   Google Scholar
• Bergsveinson, J., Goerzen, S., Redekop, A., Zoerb, S., and Ziola, B. Genetic variability in the hop-tolerance horC gene of beer-spoilage lactic acid bacteria. J. Am. Soc. Brew. Chem. 74:173–182, 2016.
   Web of Science ®Google Scholar
• Bergsveinson, J., Redekop, A., Zoerb, S., and Ziola, B. Dissolved carbon dioxide selects for lactic acid bacteria able to grow in and spoil packaged beer. J. Am. Soc. Brew. Chem. 73:331–338, 2015.
   Web of Science ®Google Scholar
• Blair, J. M. A. Multidrug efflux pumps in gram-negative bacteria and their role in antibiotic resistance. Fut. Microbiol. 9:1165–1177, 2014.
   PubMed Web of Science ®Google Scholar
• Grosdidier, A., Zoete, V., and Michielin, O. SwissDock, a protein-small molecule docking web service based on EADock DSS. Nucl. Acid. Res. 39:W270–W277, 2011.
   PubMed Web of Science ®Google Scholar
• Gustot, A., Smriti, Ruysshaert, J. M., McHaourab, H., and Govaerts, C. Lipid composition regulates the orientation of transmembrane helices in HorA, an ABC multidrug transporter. J. Biol. Chem. 285:14144–14151, 2010.
   PubMed Web of Science ®Google Scholar
• Hanson, P. I., and Whiteheart, S. W. AAA+ proteins: Have engine, will work. Nat. Rev. Mol. Cell Biol. 6:519–529, 2005.
   PubMed Web of Science ®Google Scholar
• Iijima, K., Suzuki, K., Asano, S., Kuriyama, H., and Kitagawa, Y. Isolation and identification of potential beer-spoilage Pediococcus inopinatus and beer-spoilage Lactobacillus backii strains carrying the horA and horC gene clusters. J. Inst. Brew. 113:96–101, 2007.
   Web of Science ®Google Scholar
• Iijima, K., Suzuki, K., Ozaki, K., and Yamashita, H. horC confers beer-spoilage ability of hop-sensitive Lactobacillus brevis ABBC45cc. J. Appl. Microbiol. 100:1282–1288, 2006.
   Web of Science ®Google Scholar
• Jones, P., Binns, D., Chang, H. Y., Fraser, M., Li, M., McAnulla, C., McWilliam, H., Maslen, J., Mitchell, A., Nuka, G., Pesseat, S., Quinn, A. F., Sangrador-Vegas, A., Scheremetijew, M., Yong, S. Y., Lopez, R., and Hunter, S. InterProScan 5: Genome scale protein function classification. Bioinformatics 30:1236–1240, 2014.
   PubMed Web of Science ®Google Scholar
• Kelley, L. A., Mezulis, S., Yates, C. M., Wass, M. N., and Sternberg, M. J. E. The Phyre2 web portal for protein modeling prediction and analysis. Nat. Prot. 10:845–858, 2015.
   PubMed Web of Science ®Google Scholar
• Lorca, G. L., Barabote, R. D., Zlotopolski, V., Tran, C., Winnen, B., Hvorup, R. N., Stonestrom, A. J., Nguyen, E., Huang, L., Kim, D. S., Bergsveinson, J., Kajala, I., Goerzen, S., and Ziola, B. and Saier, M. H. Transport capabilities of eleven gram-positive bacteria: Comparative genomic analyses. Biochim. Biophys. Acta 1768: 1342–1366, 2007.
   Web of Science ®Google Scholar
• Matte, A., and Delbaere, L. T. J. ATP-binding motifs. In: eLS. Wiley, Chichester, U.K., 2010. doi: 10.1002/9780470015902.a0003050.pub2
   Google Scholar
• Pittet, V., Abegunde, T., Marfleet, T., Haakensen, M., Morrow, K., Jayaprakash, T., Schroeder, K., Trost, B., Byrns, S., Bergsveinson, J., Kusalik, A., and Ziola, B. Complete genome sequence of the beer spoilage organism Pediococcus claussenii ATCC BAA-344T. J. Bacteriol. 194:1271–1272, 2012.
   PubMed Web of Science ®Google Scholar
• Pittet, V., Phister, T. G., and Ziola, B. Transcriptome sequence and plasmid copy number analysis of the brewery isolate Pediococcus claussenii ATCC BAA-344T during growth in beer. PLoS One 8:e73627, 2013.
   Web of Science ®Google Scholar
• Polissi, A., and Georgopoulos, C. Mutational analysis and properties of the msbA gene of Escherichia coli coding an essential ABC family transporter. Mol. Microbiol. 20:1221–1233, 1996.
   PubMed Web of Science ®Google Scholar
• Preissler, P., Behr, J., and Vogel, R. F. Detection of beer-spoilage Lactobacillus brevis strains by reduction of resazurin. J. Inst. Brew. 116:399–404, 2010.
   Web of Science ®Google Scholar
• Rice, P., Longden, I., and Bleasby, A. EMBOSS: The European Molecular Biology Open Software Suite. Trends Genet. 16:276–277, 2000.
   PubMed Web of Science ®Google Scholar
• Sakamoto, K., Margolles, A., van Veen, H. W., and Konings, W. N. Hop resistance in the beer spoilage bacterium Lactobacillus brevis is mediated by the ATP-binding cassette multidrug transporter HorA. J. Bacteriol. 183:5371–5375, 2001.
   PubMed Web of Science ®Google Scholar
• Sami, M., Yamashita, H., Hirono, T., Kadokura, H., Kitamoto, K., Yoda, K., and Yamasaki, M. Hop-resistant Lactobacilus brevis contains a novel plasmid harboring a multidrug resistance-like gene. J. Ferment. Bioeng. 84:1–6, 1997.
   Google Scholar
• Sievers, F., Wilm, A., Dineen, D., Gibson, T. J., Karplus, K., Li, W., Lopez, R., McWilliam, H., Remmert, M., Söding, J., Thompson, J. D., and Higgins, D. G. Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega. Mol. Syst. Biol. 7:539, 2011.
   PubMed Web of Science ®Google Scholar
• Steenacker, B., De Cooman, L., and De Vos, D. Chemical transformations of characteristic hop secondary metabolites in relation to beer properties and the brewing process: A review. Food Chem. 172: 742–756, 2015.
   Web of Science ®Google Scholar
• Suzuki, K., Sami, M., Ozaki, K., and Yamashita, H. Comparative study of two plasmids, pRH45 and pRH 20690, isolated from beer-spoilage Lactobacillus brevis ABBC45 and L. lindneri DSM20690T. J. Am. Soc. Brew. Chem. 63:11–16, 2005.
   Web of Science ®Google Scholar
• Ward, A., Reyes, C. L., Yu, J., Roth, C. B., and Chang, G. Flexibility in the ABC transporter MsbA: Alternating access with a twist. Proc. Natl. Acad. Sci. U.S.A. 104:19005–19010, 2007.
   PubMed Web of Science ®Google Scholar