285
Views
86
CrossRef citations to date
0
Altmetric
Original Articles

Improving the representation of radiation interception and photosynthesis for climate model applications

, , , &
Pages 553-565 | Received 25 Apr 2006, Accepted 20 Nov 2006, Published online: 18 Jan 2017

References

  • Aratijo, A. C., Nobre, A. D., Kruijt, B., Elbers, J. A., Dallarosa, R. and co-authors. 2002. Comparative measurements of carbon dioxide fluxes from two nearby towers in a central Amazonian rainforest: the Manaus LBA site. J. Geophys. Res.-Atmos. 107, art. no.-8090.
  • Arora, V. 2002. Modelling vegetation as a dynamic component in soil-vegetation-atmosphere transfer schemes and hydrological models. Rev. Geophys. 40, 1006, 10.1029/2001RG00103.
  • Atkin, O. K., Evans, J. R., Ball, M. C., Lambers, H. and Pons, T. L. 2000. Leaf respiration of snow gum in the light and dark, interactions between temperature and irradiance. Plant PhysioL 122, 915–923.
  • Atkin, O. K., Evans, J. R. and Siebke, K. 1998. Relationship between the inhibition of leaf respiration by light and enhancement of leaf dark respiration following light treatment. Aust. J. Plant PhysioL 25, 437–443.
  • Aubinet, M., Heinesch, B. and Longdoz, B. 2002. Estimation of the carbon sequestration by a heterogeneous forest: night flux corrections, heterogeneity of the site and inter-annual variability. Glob. Change Biol. 8, 1053–1071.
  • Baker, I. T., Denning, A. S., Hanan, H., Berry, J. A., Collatz, G. J., and co-authors. 2006. The next generation of the simple biosphere model (SiB3): model formulation and preliminary results. In: Proceed-ings of the 1st iLEAPs Science Conference (eds. A. Reissell and A. Aarflot). Finish Association for Aerosol Research, Boulder, Colorado, USA.
  • Baker, T. R., Phillips, 0. L., Malhi, Y., Almeida, S., Arroyo, L. and co-authors. 2004. Increasing biomass in Amazonian forest plots. Philos. Trans. R. Soc. Lond. Ser B-BioL Sci. 359, 353–365.
  • Baldocchi, D. D. 2003. Assessing the eddy covariance technique for evaluating carbon dioxide exchange rates of ecosystems: past, present and future. Glob. Change Biol. 9, 479–492.
  • Baldocchi, D. D. and Harley, P. C. 1995. Scaling Carbon-dioxide and water-vapor exchange from leaf to canopy in a deciduous forest .2. Model testing and application. Plant Cell Environ. 18, 1157–1173.
  • Bravard, S. and Righi, D. 1989. Geochemical Differences in an Oxisol Spodosol Toposequence of Amazonia, Brazil. Geoderma 44, 29–42.
  • Brooks, A. and Farquhar, G. D. 1985. Effect of temperature on the CO2/02 specificity of ribulose 1,5-bisphosphate carboxylase oxyge-nase and the rate of respiration in the light: estimates from gas ex-change measurements on spinach. Planta 165, 397–406.
  • Cabral, O. M. R., McWilliam, A. L. C. and Roberts, J. M. 1996. In-canopy microclimate of Amazonian forest and estimates of transpiration. In: Amazon Deforestation and Climate (eds. J. H. C. Gash, C. A. Nobre, J. Roberts and R. L. Victoria). John Wiley & Sons, Chichester, UK.
  • Carmo, J. B., Keller, M., Dias, J. D., de Camargo, P. B. and Crill, P. 2006. A source of methane from upland forests in the Brazilian Amazon. Geophys. Res. lett. 33, 10.1029/2005GL025436.
  • Carswell, F. E., Meir, P., Wandelli, E. V., Bonates, L. C. M., Kruijt, B. and co-authors. 2000. Photosynthetic capacity in a central Amazonian rain forest. Tree PhysioL 20, 179–186.
  • Chambers, J., Tribuzy, E. S., Toledo, L. C., Crispim, B. F., Higuchi, N. and co-authors. 2004. Respiration from a tropical forest ecosystem: partitioning of sources and low carbon use efficiency. Ecol. Appl. 14, S72-S88.
  • Chambers, J. Q., Schimel, J. P. and Nobre, A. D. 2001. Respiration from coarse wood litter in central Amazon forests. Biogeochemistiy 52, 115–131.
  • Chen, J. M., Rich, P. M., Gower, S. T., Norman, J. M. and Plummer, S. 1997. Leaf area index of boreal forests: Theory, techniques and measurements. J. Geophys. Res.-Atmos. 102, 29429–29443.
  • Collatz, G. J., Ball, J. T., Grivet, C. and Berry, J. A. 1991. Physiological and environmental regulation of stomatal conductance, photosynthesis and transpiration: a model that includes a laminar boundary layer. Agric. For MeteoroL 54, 107–136.
  • Collatz, G. J., Berry, J. A., Farquhar, G. D. and Pierce, J. 1990. The relationship between the Rubisco reaction-mechanism and models of photosynthesis. Plant Cell Environ. 13, 219–225.
  • Collatz, G. J., Ribas-Carbo, M. and Berry, J. A. 1992. Coupled photo-synthesis stomatal conductance model for leaves of C4 plants. AusL J. Plant PhysioL 19, 519–538.
  • Cox, P. M., Betts, R. A., Collins, M., Harris, P. P., Huntingford, C. and and co-authors. 2004. Amazonian forest dieback under climate-carbon cycle projections for the 21st century. Theor AppL ClimatoL 78, 137–156.
  • Cox, P. M., Betts, R. A., Jones, C. D., Spall, S. A. and Totterdell, I. J. 2000. Acceleration of global warming due to carbon-cycle feedbacks in a coupled climate model. Nature 408, 750–750.
  • Cox, P. M., Huntingford, C. and Harding, R. J. 1998. A canopy con-ductance and photosynthesis model for use in a GCM land surface scheme. J. Hydrol. 213, 79–94.
  • Davidson, E. A., Savage, K., Bolstad, P., Clark, D. A., Curtis, P. S. and co-authors. 2002. Belowground carbon allocation in forests estimated from litterfall and IRGA-based soil respiration measurements. Agric. For MeteoroL 113, 39–51.
  • de Pury, D. G. G. and Farquhar, G. D. 1997. Simple scaling of photosyn-thesis from leaves to canopies without the errors of big-leaf models. Plant Cell Environ. 20, 537–557.
  • de Wit, C. T. 1965. Photosynthesis of leaf canopies. Agricultural research report. No. 663. In: PUDOC, Wageningen, The Netherlands.
  • Domingues, T. E, Berry, J. A., Martinelli, L. A., Ometto, J. P. H. B. and Ehleringer, J. R. 2005. Parameterization of canopy structure and leaf-level gas exchange for an Eastern Amazonian tropical rain for-est (Tapajos National Forest, Para, Brazil). Earth Interactions 9, 1–23.
  • Duncan, W. G., Loomis, R. S., Williams, W. A. and Hanau, R. 1967. A model for simulating photosynthesis in plant communities. Hi/gardia 38, 181–205.
  • Ehleringer, J. and Pearcy, R. W. 1983. Variation in Quantum Yield for CO2 Uptake among C3 and C4 Plants. Plant PhysioL 73, 555–559.
  • Ehleringer, J. R., Lin, Z. F., Field, C. B., Sun, G. C. and Kuo, C. Y. 1987. Leaf carbon isotope ratios of plants from a subtropical monsoon forest. Oecologia 72, 109–114.
  • Falge, E., Reth, S., Bruggemann, N., Butterbach-Bahl, K., Goldberg, V. and co-authors. 2005. Comparison of surface energy exchange models with eddy flux data in forest and grassland ecosystems of Germany. EcoL Model. 188, 174–216.
  • Farquhar, G. D., Ehleringer, J. R. and Hubick, K. T. 1989. Carbon Isotope Discrimination and Photosynthesis. Annu. Rev. Plant PhysioL Plant Molec. Biol. 40, 503–537.
  • Farquhar, G. D., Oleary, M. H. and Berry, J. A. 1982. On the rela-tionship between carbon isotope discrimination and the inter-cellular carbon-dioxide concentration in leaves. Aust. J. Plant Physiol. 9, 121–137.
  • Figueroa, S. N. and Nobre, C. 1990. Precipitation distribution over cen-tral and western tropical South America. Climanalise 5, 36–40.
  • Finnigan, J. J., Clement, R., Malhi, Y., Leuning, R. and Cleugh, H. A. 2003. A re-evaluation of long-term flux measurement techniques-part I: averaging and coordinate rotation. Bound.-Layer Meteor 107, 1–48.
  • Friend, A. D. and Kiang, N.Y. 2005. Land surface model development for the GISS GCM: Effects of improved canopy physiology on simulated climate. J. Clim. 18, 2883–2902.
  • Goudriaan, J. 1977. Crop Micrometeorology: A Simulation Study. Centre for Agricultural Publishing and Documentation, Wageningen, The Netherlands, pp. 249.
  • Hoefnagel, M. H. N., Atkin, 0. K. and Wislcich, J. T. 1998. Interdepen-dence between chloroplasts and mitochondria in the light and the dark. Biochimica Et Biophysica Acta-Bioenergetics 1366, 235–255.
  • Jacobs, C. 1994. Direct Impact of atmospheric CO2 enrichment on regional transpiration. In: Wageningen Agricultural Univesity, Wageningen, The Netherlands.
  • Janssens, I. A., Lankreijer, H., Matteucci, G., Kowalski, A. S., Buchmann, N. and co-authors. 2001. Productivity overshadows tem-perature in determining soil and ecosystem respiration across Euro-pean forests. Glob. Change Biol. 7, 269–278.
  • Jogireedy, V, Cox, P. M., Huntingford, C., Harding, R. J. and Mercaco, L. M. 2006. An improved description of canopy light intercep-tion for use in a GCM land-surface scheme: calibration and testing against carbon fluxes at a coniferous forest. In: Haddley Centre Technical Note 63 Available at (http://www.metoffice.com/research/ hadleycentre/pubs/HCTN/index.html).
  • Kelly, N., Turnbull, T., Bren, L. and Adams, A. 2004. The Geometry of light capture in plantation Eucaliptus globulus labill. In: Proceed-ings of the 4th International Workshop on Functional-Structural Plant Models (eds. C. Godin, J. Hanan, W. Kurth, A. Lacointe, A. Takenalca, P. Prusinlciewicz, T. M. DeJong, B. Beveridge and B. Andrieu). UMR AMAP, Montpellier, France.
  • Kruijt, B., Elbers, J. A., von Randow, C., Araujo, A. C., Oliveira, P. J. and co-authors. 2004. The robustness of eddy correlation fluxes for Amazon rain forest conditions. EcoL Appl. 14, S101-S113. Kucharik, C. J., Norman, J. M. and Gower, S. T. 1998. Measurements of leaf orientation, light distribution and sunlit leaf area in a boreal aspen forest. Agric. For. MeteoroL 91, 127–148.
  • Lloyd, J. and Taylor, J. A. 1994. On the temperature dependence of soil respiration. FuncL EcoL 8, 315–323.
  • Lloyd, J., Wong, S. C., Styles, J. M., Batten, D., Priddle, R. and co-authors. 1995. Measuring and modelling whole-tree gas exchange. Aust. J. Plant PhysioL 22, 987–1000.
  • Luizao, R. C. C., Luizao, E J., Paiva, R. Q., Monteiro, T. F., Sousa, L. S. and co-authors. 2004. Variation of carbon and nitrogen cycling processes along a topographic gradient in a central Amazonian forest. Glob. Change Biol. 10, 592–600.
  • Massman, W. J. and Lee, X. 2002. Eddy covariance flux corrections and uncertainties in long-term studies of carbon and energy exchanges. Agric. For MeteoroL 113, 121–144.
  • McWilliam, A. L. C., Roberts, J. M., Cabral, O. M. R., Leitao, M., Decosta, A. C. L., and co-authors. 1993. Leaf-Area Index and Above-ground Biomass of Terra-Firme Rain-Forest and Adjacent Clearings in Amazonia. FuncL Ecol. 7,310–317.
  • Medlyn, B., Barrett, D., Landsberg, J., Sands, P. and Clement, R. 2003. Conversion of canopy intercepted radiation to photosynthate: review of modelling approaches for regional scales. FuncL Plant Biol. 30, 153–169.
  • Meir, P., Grace, J. and Miranda, A. C. 2000. Photographic method to measure the vertical distribution of leaf area density in forests. Agric. For MeteoroL 102, 105–111.
  • Meir, P., Kruijt, B., Broadmeadow, M., Barbosa, E., Kull, 0. and co-authors. 2002. Acclimation of photosynthetic capacity to irradiance in tree canopies in relation to leaf nitrogen concentration and leaf mass per unit area. Plant Cell Environ. 25, 343–357.
  • Norman, J. M. 1980. Interfacing leaf and canopy light interception mod-els. In: Predicting photosynthesis for ecosystem models ( eds. J. D. Hesketh & J. W. Jones). CRC Press, Boca Raton, Fl, Vol. 2, pp 49–67.
  • Ometto, J. P. H. B., Ehleringer, J. H., Domingues, T. F., Berry, J. A., Ishida, F. Y., and co-authors. 2006. The stable carbon and nitrogen isotopic composition of vegetation in tropical forests of the Amazon region, Brazil. Biogeochem. 79, 251–274.
  • Ranquin de Merona, J. M., Prance, G. T., Hutchings, R. W., Freitas da Silva, M., Rodriguez, W. A. and co-authors. 1992. Preliminary results of a large scale tree inventory of upland rain forest in the central amazon. Acta Amazonica 22,494–534.
  • Sellers, P. J. 1985. Canopy reflectance, photosynthesis and transpiration. Int. J. Remote Sens. 6, 1335–1372.
  • Sellers, P. J., Berry, J. A., Collatz, G. J., Field, C. B. and Hall, E G. 1992. Canopy reflectance, photosynthesis, and transpiration HI. A reanalysis using improved leaf models and a new canopy integration scheme. Remote Sens. Environ. 42, 187–216.
  • Shuttleworth, W. J. 1989. Micrometeorology of temperate and tropical forest. Philos. Trans. R. Soc. Lond. Ser B-BioL Sci. 324, 299–334.
  • Silva de Souza, J. 2004. Dinamica espacial e temporal do fluxo de CO2 do solo em floresta de terra firme na amazonia central. Master Thesis. In: Universidad Federal do Amazonas, Manaus, Brazil.
  • Sinclair, T. R., Murphy, C. E., Jr. and Knoerr, K. R. 1976. Development and evaluation of simplified models for simulating canopy photosyn-thesis and transpiration. J. AppL EcoL 13, 813–829.
  • Smolander, H. 1984. Measurement of fluctuating irradiance in field stud-ies of photosynthesis. Acta Forestalia Fennica 187, 1–56.
  • Sotta, E. D., Meir, R, Malhi, Y., Nobre, A. D., Hodnett, M. and co-authors. 2004. Soil CO2 efflux in a tropical forest in the central Ama-zon. Glob. Change Biol. 10, 601–617.
  • Wang, Y. P. 2003. A comparison of three different canopy radiation models commonly used in plant modelling. FuncL Plant Biol. 30, 143–152.
  • Wang, Y. P. and Leuning, R. 1998. A two-leaf model for canopy conduc-tance, photosynthesis and partitioning of available energy I: model description and comparison with a multilayered model. Agric. For Meteorol. 91, 89–111.
  • Williams, M., Malhi, Y., Nobre, A. D., Rastetter, E. B., Grace, J. and co-authors. 1998. Seasonal variation in net carbon exchange and evap-otranspiration in a Brazilian rain forest: a modelling analysis. Plant Cell Environ. 21, 953–968.
  • Williams, M., Rastetter, E. B., Fernandes, D. N., Goulden, M. L., Wofsy, S. C. and co-authors. 1996. Modelling the soil-plant-atmosphere con-tinuum in a Quercus-Acer stand at Harvard forest: The regulation of stomatal conductance by light, nitrogen and soil/plant hydraulic prop-erties. Plant Cell Environ. 19, 911–927.
  • Wilson, K., Goldstein, A., Falge, E., Aubinet, M., Baldocchi, D. and co-authors. 2002. Energy balance closure at FLUXNET sites. Agric. For MeteoroL 113, 223–243.
  • Wirth, R., Weber, B. and Ryel, R. J. 2001. Spatial and temporal variability of canopy structure in a tropical moist forest. Acta Oecologica-Int. J. EcoL 22, 235–244.
  • Wohlfahrt, G., Bahn, M., Haslwanter, A., Newesely, C. and Cernusca, A. 2005. Estimation of daytime ecosystem respiration to determine gross primary production of a mountain meadow. Agric. For MeteoroL 130, 13–25.