Phylogenetic Analysis of Soybean-Nodulating Rhizobia Isolated from Alkaline Soils in Vietnam

References

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   Web of Science ®Google Scholar
• Dowdle , SF and Bohlool , BB . 1985 . Predominance of fast-growing Rhizobium japonicum in a soybean field in the People's Republic of China . Appl. Environ. Microbiol. , 50 : 1171 – 1176 .
   PubMed Web of Science ®Google Scholar
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   PubMed Web of Science ®Google Scholar
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   Google Scholar
• Ham , GE , Frederick , LR and Anderson , IC . 1971 . Serogroups of Rhizobium japonicum in soybean nodules sampled in Iowa . Agronomy J. , 63 : 69 – 72 .
   Web of Science ®Google Scholar
• Hiraishi , A , Inagaki , K , Tanimoto , Y , Iwasaki , M , Kishimoto , N and Tanaka , H . 1997 . Phylogenetic characterization of a new thermoacidophilic bacterium isolated from hot springs in Japan . J. Gen. Appl. Microbiol. , 43 : 295 – 304 .
   PubMed Web of Science ®Google Scholar
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   Web of Science ®Google Scholar
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   PubMed Web of Science ®Google Scholar
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   Web of Science ®Google Scholar
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   PubMed Web of Science ®Google Scholar
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   PubMed Web of Science ®Google Scholar
• Sadowsky , MJ , Keyser , HH and Bohlool , BB . 1983 . Biochemical characterization of fast- and slow-growing rhizobia that nodulate soybeans . Int. J. Syst. Bacteriol. , 33 : 716 – 722 .
   Google Scholar
• Saeki , Y , Akagi , I , Takaki , H and Nagatomo , Y . 2000 . Diversity of indigenous Bradyrhizobium strains isolated from three different Rj-soybean cultivars in terms of randomly amplified polymorphic DNA and intrinsic antibiotic resistance . Soil Sci. Plant Nutr. , 46 : 917 – 926 .
   Web of Science ®Google Scholar
• Saeki , Y , Aimi , N , Hashimoto , M , Tsukamoto , S , Kaneko , A , Yoshida , N , Nagatomo , Y and Akao , S . 2004 . Grouping of Bradyrhizobium USDA strains by sequence analysis of 16S rDNA and 16S-23S rDNA internal transcribed spacer region . Soil Sci. Plant Nutr. , 50 : 517 – 525 .
   Web of Science ®Google Scholar
• Sakai , M , Futamata , H , Kim , J-S and Matsuguchi , T . 1998 . Effect of soil salinity on population structure of fluorescent pseudomonads in spinach rhizosphere . Soil Sci. Plant Nutr. , 44 : 701 – 705 .
   Web of Science ®Google Scholar
• Sameshima , R , Isawa , T , Sadowsky , MJ , Hamada , T , Kasai , H , Shutsrirung , A , Mitsui , H and Minamisawa , K . 2003 . Phylogeny and distribution of extra-slow-growing Bradyrhizobium japonicum harboring high copy numbers of RSα, RSβ and IS 1631 . FEMS Microbiol. Ecol. , 44 : 191 – 202 .
   PubMed Web of Science ®Google Scholar
• Scholla , MH and Elkan , GH . 1984 . Rhizobium fredii sp. nov., a fast-growing species that effectively nodulates soybeans . Int. J. Syst. Bacteriol. , 34 : 484 – 486 .
   Google Scholar
• van Berkum , P and Fuhrmann , JJ . 2000 . Evolutionary relationships among the soybean bradyrhizobia reconstructed from 16S rRNA gene and internally transcribed spacer region sequence divergence . Int. J. Syst. Evol. Microbiol. , 50 : 2165 – 2172 .
   PubMed Web of Science ®Google Scholar
• Ando , S and Yokoyama , T . 1999 . Phylogenetic analyses of Bradyrhizobium strains nodulating soybean (Glycine max) in Thailand with reference to the USDA strains ofBradyrhizobium Can . J. Microbiol. , 45 : 639 – 645 .
   Web of Science ®Google Scholar
• Capela , D , Barloy-Hubler , F , Gouzy , J , Bothe , G , Ampe , F , Batut , J , Boistard , P , Becker , A , Boutry , M , Cadieu , E , Dréano , S , Gloux , S , Godrie , T , Goffeau , A , Kahn , D , Kiss , E , Lelaure , V , Masuy , D , Pohl , T , Portetelle , D , Pühler , A , Purnelle , B , Ramsperger , U , Renard , C , Thébault , P , Vandenbol , M , Weidner , S and Galibert , F . 2001 . Analysis of the chromosome sequence of the legume symbiont Sinorhizobium meliloti strain 1021 . Proc. Natl. Acad. Sci. USA , 98 : 9877 – 9882 .
   PubMed Web of Science ®Google Scholar
• Chen , WX , Yan , GH and Li , JL . 1988 . Numerical taxonomic study of fast-growing soybean rhizobia and a proposal that Rhizobium fredii be assigned to Sinorhizobium gen. nov . Int. J. Syst. Bacteriol. , 38 : 392 – 397 .
   Google Scholar
• Damirgi , SM , Frederick , LR and Anderson , IC . 1967 . Serogroups of Rhizobium japonicum in soybean nodules as affected by soil types . Agronomy J. , 59 : 10 – 12 .
   Web of Science ®Google Scholar
• Dowdle , SF and Bohlool , BB . 1985 . Predominance of fast-growing Rhizobium japonicum in a soybean field in the People's Republic of China . Appl. Environ. Microbiol. , 50 : 1171 – 1176 .
   PubMed Web of Science ®Google Scholar
• Galibert , F , Finan , TM , Long , SR , Pühler , A , Abola , P , Ampe , F , Barloy-Hubler , F , Barnett , MJ , Becker , A , Boistard , P , Bothe , G , Boutry , M , Bowser , L , Buhrmester , J , Cadieu , E , Capela , D , Chain , P , Cowie , A , Davis , RW , Dréano , S , Federspiel , NA , Fisher , RF , Gloux , S , Godrie , T , Goffeau , A , Golding , B , Gouzy , J , Gurjal , M , Hernandez-Lucas , I , Hong , A , Huizar , L , Hyman , RW , Jones , T , Kahn , D , Kahn , ML , Kalman , S , Keating , DH , Kiss , E , Komp , C , Lelaure , V , Masuy , D , Palm , C , Peck , MC , Pohl , TM , Portetelle , D , Purnelle , B , Ramsperger , U , Surzycki , R , Thébault , P , Vandenbol , M , Vorhölter , F-J , Weidner , S , Wells , DH , Wong , K , Yeh , K-C and Batut , J . 2001 . The composite genome of the legume symbion Sinorhizobium meliloti . Science , 293 : 668 – 672 .
   PubMed Web of Science ®Google Scholar
• Gross , DC , Vidaver , AK and Klucas , RV . 1979 . Plasmids, biological properties and efficacy of nitrogen fixation in Rhizobium japonicum strains indigenous to alkaline soils . J. Gen. Microbiol. , 114 : 257 – 266 .
   Google Scholar
• Ham , GE , Frederick , LR and Anderson , IC . 1971 . Serogroups of Rhizobium japonicum in soybean nodules sampled in Iowa . Agronomy J. , 63 : 69 – 72 .
   Web of Science ®Google Scholar
• Hiraishi , A , Inagaki , K , Tanimoto , Y , Iwasaki , M , Kishimoto , N and Tanaka , H . 1997 . Phylogenetic characterization of a new thermoacidophilic bacterium isolated from hot springs in Japan . J. Gen. Appl. Microbiol. , 43 : 295 – 304 .
   PubMed Web of Science ®Google Scholar
• Ishizuka , J , Suemasu , Y and Mizogami , K . 1991 . Preference of Rj-soybean cultivars for Bradyrhizobium japonicum for nodulation . Soil Sci. Plant Nutr. , 37 : 15 – 21 .
   Web of Science ®Google Scholar
• Keyser , HH , Bohlool , BB , Hu , TS and Weber , DF . 1982 . Fast-growing rhizobia isolated from root nodules of soybean . Science , 215 : 1631 – 1632 .
   PubMed Web of Science ®Google Scholar
• Kowalski , M , Ham , GE , Frederick , LR and Anderson , IC . 1974 . Relationship between strains of Rhizobium japonicum and their bacteriophages from soil and nodules of field-grown soybeans . Soil Sci. , 118 : 221 – 228 .
   Web of Science ®Google Scholar
• Kündig , C , Beck , C , Hennecke , H and Göttfert , M . 1995 . A single rRNA gene region i Bradyrhizobium japonicum . J. Bacteriol. , 177 : 5151 – 5154 .
   PubMed Web of Science ®Google Scholar
• Kuykendall , LD , Saxena , B , Devine , TE and Udell , SE . 1992 . Genetic diversity in Bradyrhizobium japonicum Jordan 1982 and a proposal for Bradyrhizobium elkanii sp. nov . Can. J. Microbiol. , 38 : 501 – 505 .
   Web of Science ®Google Scholar
• Nei , M and Li , WH . 1979 . Mathematical model for studying genetic variation in terms of restriction endonucleases . Proc. Natl. Acad. Sci. USA , 76 : 5269 – 5273 .
   PubMed Web of Science ®Google Scholar
• Sadowsky , MJ , Keyser , HH and Bohlool , BB . 1983 . Biochemical characterization of fast- and slow-growing rhizobia that nodulate soybeans . Int. J. Syst. Bacteriol. , 33 : 716 – 722 .
   Google Scholar
• Saeki , Y , Akagi , I , Takaki , H and Nagatomo , Y . 2000 . Diversity of indigenous Bradyrhizobium strains isolated from three different Rj-soybean cultivars in terms of randomly amplified polymorphic DNA and intrinsic antibiotic resistance . Soil Sci. Plant Nutr. , 46 : 917 – 926 .
   Web of Science ®Google Scholar
• Saeki , Y , Aimi , N , Hashimoto , M , Tsukamoto , S , Kaneko , A , Yoshida , N , Nagatomo , Y and Akao , S . 2004 . Grouping of Bradyrhizobium USDA strains by sequence analysis of 16S rDNA and 16S–23S rDNA internal transcribed spacer region . Soil Sci. Plant Nutr. , 50 : 517 – 525 .
   Web of Science ®Google Scholar
• Sakai , M , Futamata , H , Kim , J-S and Matsuguchi , T . 1998 . Effect of soil salinity on population structure of fluorescent pseudomonads in spinach rhizosphere . Soil Sci. Plant Nutr. , 44 : 701 – 705 .
   Web of Science ®Google Scholar
• Sameshima , R , Isawa , T , Sadowsky , MJ , Hamada , T , Kasai , H , Shutsrirung , A , Mitsui , H and Minamisawa , K . 2003 . Phylogeny and distribution of extra-slow-growing Bradyrhizobium japonicum harboring high copy numbers of RSα, RSβ and IS 1631 . FEMS Microbiol. Ecol. , 44 : 191 – 202 .
   PubMed Web of Science ®Google Scholar
• Scholla , MH and Elkan , GH . 1984 . Rhizobium fredii sp. nov., a fast-growing species that effectively nodulates soybeans . Int. J. Syst. Bacteriol. , 34 : 484 – 486 .
   Google Scholar
• van Berkum , P and Fuhrmann , JJ . 2000 . Evolutionary relationships among the soybean bradyrhizobia reconstructed from 16S rRNA gene and internally transcribed spacer region sequence divergence . Int. J. Syst. Evol. Microbiol. , 50 : 2165 – 2172 .
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