Dre2, a Conserved Eukaryotic Fe/S Cluster Protein, Functions in Cytosolic Fe/S Protein Biogenesis

REFERENCES

• Aasa, R., T. Vanngard, and H. B. Dunford. 1975. EPR studies on compound I of horseradish peroxidase. Biochim. Biophys. Acta 391:259–264.
   PubMedGoogle Scholar
• Amutha, B., D. M. Gordon, Y. Gu, E. R. Lyver, A. Dancis, and D. Pain. 2008. GTP is required for iron-sulfur cluster biogenesis in mitochondria. J. Biol. Chem. 283:1362–1371.
   PubMed Web of Science ®Google Scholar
• Amutha, B., and D. Pain. 2003. Nucleoside diphosphate kinase of Saccharomyces cerevisiae, Ynk1p: localization to the mitochondrial intermembrane space. Biochem. J. 370:805–815.
   PubMedGoogle Scholar
• Beinert, H., R. H. Holm, and E. Munck. 1997. Iron-sulfur clusters: nature's modular, multipurpose structures. Science 277:653–659.
   PubMedGoogle Scholar
• Ben-Aroya, S., C. Coombes, T. Kwok, K. A. O'Donnell, J. D. Boeke, and P. Hieter. 2008. Toward a comprehensive temperature-sensitive mutant repository of the essential genes of Saccharomyces cerevisiae. Mol. Cell 30:248–258.
   PubMed Web of Science ®Google Scholar
• Chanet, R., and M. Heude. 2003. Characterization of mutations that are synthetic lethal with pol3-13, a mutated allele of DNA polymerase delta in Saccharomyces cerevisiae. Curr. Genet. 43:337–350.
   PubMedGoogle Scholar
• Fontecave, M., and S. Ollagnier-de-Choudens. 2008. Iron-sulfur cluster biosynthesis in bacteria: mechanisms of cluster assembly and transfer. Arch. Biochem. Biophys. 474:226–237.
   PubMed Web of Science ®Google Scholar
• Goldberg, A. V., S. Molik, A. D. Tsaousis, K. Neumann, G. Kuhnke, F. Delbac, C. P. Vivares, R. P. Hirt, R. Lill, and T. M. Embley. 2008. Localization and functionality of microsporidian iron-sulphur cluster assembly proteins. Nature 452:624–628.
   PubMed Web of Science ®Google Scholar
• Guthrie, C., and G. R. Fink (ed.). 1991. Methods in enzymology, vol. 194. Guide to yeast genetics and molecular biology. Academic Press, Inc., San Diego, CA.
   Google Scholar
• Hao, Z., X. Li, T. Qiao, R. Du, L. Hong, and D. Fan. 2006. CIAPIN1 confers multidrug resistance by upregulating the expression of MDR-1 and MRP-1 in gastric cancer cells. Cancer Biol. Ther. 5:261–266.
   PubMed Web of Science ®Google Scholar
• Hao, Z., X. Li, T. Qiao, R. Du, G. Zhang, and D. Fan. 2006. Subcellular localization of CIAPIN1. J. Histochem. Cytochem. 54:1437–1444.
   PubMedGoogle Scholar
• Herrmann, J. M., and R. Kohl. 2007. Catch me if you can! Oxidative protein trapping in the intermembrane space of mitochondria. J. Cell Biol. 176:559–563.
   PubMed Web of Science ®Google Scholar
• Johnson, D. C., D. R. Dean, A. D. Smith, and M. K. Johnson. 2005. Structure, function, and formation of biological iron-sulfur clusters. Annu. Rev. Biochem. 74:247–281.
   PubMed Web of Science ®Google Scholar
• Kennedy, M. C., and H. Beinert. 1988. The state of cluster SH and S2- of aconitase during cluster interconversions and removal. A convenient preparation of apoenzyme. J. Biol. Chem. 263:8194–8198.
   PubMedGoogle Scholar
• Kispal, G., P. Csere, C. Prohl, and R. Lill. 1999. The mitochondrial proteins Atm1p and Nfs1p are essential for biogenesis of cytosolic Fe/S proteins. EMBO J. 18:3981–3989.
   PubMed Web of Science ®Google Scholar
• Kispal, G., K. Sipos, H. Lange, Z. Fekete, T. Bedekovics, T. Janaky, J. Bassler, D. J. Aguilar Netz, J. Balk, C. Rotte, and R. Lill. 2005. Biogenesis of cytosolic ribosomes requires the essential iron-sulphur protein Rli1p and mitochondria. EMBO J. 24:589–598.
   PubMedGoogle Scholar
• Klinge, S., J. Hirst, J. D. Maman, T. Krude, and L. Pellegrini. 2007. An iron-sulfur domain of the eukaryotic primase is essential for RNA primer synthesis. Nat. Struct. Mol. Biol. 14:875–877.
   PubMed Web of Science ®Google Scholar
• Kohlhaw, G. B. 1988. Isopropylmalate dehydratase from yeast. Methods Enzymol. 166:423–429.
   PubMedGoogle Scholar
• Leighton, J. 1995. ATP-binding cassette transporter in Saccharomyces cerevisiae mitochondria. Methods Enzymol. 260:389–396.
   PubMedGoogle Scholar
• Li, J., M. Kogan, S. A. Knight, D. Pain, and A. Dancis. 1999. Yeast mitochondrial protein, Nfs1p, coordinately regulates iron-sulfur cluster proteins, cellular iron uptake, and iron distribution. J. Biol. Chem. 274:33025–33034.
   PubMedGoogle Scholar
• Li, L., and J. Kaplan. 2004. A mitochondrial-vacuolar signaling pathway in yeast that affects iron and copper metabolism. J. Biol. Chem. 279:33653–33661.
   PubMed Web of Science ®Google Scholar
• Lill, R., R. Dutkiewicz, H. P. Elsasser, A. Hausmann, D. J. Netz, A. J. Pierik, O. Stehling, E. Urzica, and U. Muhlenhoff. 2006. Mechanisms of iron-sulfur protein maturation in mitochondria, cytosol and nucleus of eukaryotes. Biochim. Biophys. Acta 1763:652–667.
   PubMed Web of Science ®Google Scholar
• Longtine, M. S., A. McKenzie III, D. J. Demarini, N. G. Shah, A. Wach, A. Brachat, P. Philippsen, and J. R. Pringle. 1998. Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae. Yeast 14:953–961.
   PubMed Web of Science ®Google Scholar
• Martin, H., C. Eckerskorn, F. Gartner, J. Rassow, F. Lottspeich, and N. Pfanner. 1998. The yeast mitochondrial intermembrane space: purification and analysis of two distinct fractions. Anal. Biochem. 265:123–128.
   PubMedGoogle Scholar
• Morgan, B., and H. Lu. 2008. Oxidative folding competes with mitochondrial import of the small Tim proteins. Biochem. J. 411:115–122.
   PubMedGoogle Scholar
• Muhlenhoff, U., J. A. Stadler, N. Richhardt, A. Seubert, T. Eickhorst, R. J. Schweyen, R. Lill, and G. Wiesenberger. 2003. A specific role of the yeast mitochondrial carriers MRS3/4p in mitochondrial iron acquisition under iron-limiting conditions. J. Biol. Chem. 278:40612–40620.
   PubMed Web of Science ®Google Scholar
• Munujos, P., J. Coll-Canti, F. Gonzalez-Sastre, and F. J. Gella. 1993. Assay of succinate dehydrogenase activity by a colorimetric-continuous method using iodonitrotetrazolium chloride as electron acceptor. Anal. Biochem. 212:506–509.
   PubMedGoogle Scholar
• Murakami, H., D. Pain, and G. Blobel. 1988. 70-kD heat shock-related protein is one of at least two distinct cytosolic factors stimulating protein import into mitochondria. J. Cell Biol. 107:2051–2057.
   PubMedGoogle Scholar
• Nakai, Y., M. Nakai, H. Hayashi, and H. Kagamiyama. 2001. Nuclear localization of yeast Nfs1p is required for cell survival. J. Biol. Chem. 276:8314–8320.
   PubMedGoogle Scholar
• Netz, D. J., A. J. Pierik, M. Stumpfig, U. Muhlenhoff, and R. Lill. 2007. The Cfd1-Nbp35 complex acts as a scaffold for iron-sulfur protein assembly in the yeast cytosol. Nat. Chem. Biol. 3:278–286.
   PubMed Web of Science ®Google Scholar
• Neupert, W., and J. M. Herrmann. 2007. Translocation of proteins into mitochondria. Annu. Rev. Biochem. 76:723–749.
   PubMed Web of Science ®Google Scholar
• Nobrega, F. G., M. P. Nobrega, and A. Tzagoloff. 1992. BCS1, a novel gene required for the expression of functional Rieske iron-sulfur protein in Saccharomyces cerevisiae. EMBO J. 11:3821–3829.
   PubMedGoogle Scholar
• Onder, O., H. Yoon, B. Naumann, M. Hippler, A. Dancis, and F. Daldal. 2006. Modifications of the lipoamide-containing mitochondrial subproteome in a yeast mutant defective in cysteine desulfurase. Mol. Cell. Proteomics 5:1426–1436.
   PubMed Web of Science ®Google Scholar
• Rouault, T. A. 2006. The role of iron regulatory proteins in mammalian iron homeostasis and disease. Nat. Chem. Biol. 2:406–414.
   PubMed Web of Science ®Google Scholar
• Roy, A., N. Solodovnikova, T. Nicholson, W. Antholine, and W. E. Walden. 2003. A novel eukaryotic factor for cytosolic Fe-S cluster assembly. EMBO J. 22:4826–4835.
   PubMedGoogle Scholar
• Rudolf, J., V. Makrantoni, W. J. Ingledew, M. J. Stark, and M. F. White. 2006. The DNA repair helicases XPD and FancJ have essential iron-sulfur domains. Mol. Cell 23:801–808.
   PubMed Web of Science ®Google Scholar
• Sherman, F. 2002. Getting started with yeast. Methods Enzymol. 350:3–41.
   PubMed Web of Science ®Google Scholar
• Shibayama, H., E. Takai, I. Matsumura, M. Kouno, E. Morii, Y. Kitamura, J. Takeda, and Y. Kanakura. 2004. Identification of a cytokine-induced antiapoptotic molecule anamorsin essential for definitive hematopoiesis. J. Exp. Med. 199:581–592.
   PubMed Web of Science ®Google Scholar
• Siegel, L., and S. Englard. 1962. Beef-heart malic dehydrogenases. III. Comparative studies of some properties of M-malic dehydrogenase and S-malic dehydrogenase. Biochim. Biophys. Acta 64:101–110.
   PubMedGoogle Scholar
• Siegel, L. M. 1965. A direct microdetermination for sulfide. Anal. Biochem. 11:126–132.
   PubMed Web of Science ®Google Scholar
• Stearman, R., D. S. Yuan, Y. Yamaguchi-Iwai, R. D. Klausner, and A. Dancis. 1996. A permease-oxidase complex involved in high-affinity iron uptake in yeast. Science 271:1552–1557.
   PubMed Web of Science ®Google Scholar
• Sturtz, L. A., K. Diekert, L. T. Jensen, R. Lill, and V. C. Culotta. 2001. A fraction of yeast Cu,Zn-superoxide dismutase and its metallochaperone, CCS, localize to the intermembrane space of mitochondria. A physiological role for SOD1 in guarding against mitochondrial oxidative damage. J. Biol. Chem. 276:38084–38089.
   PubMed Web of Science ®Google Scholar
• Tong, W. H., and T. A. Rouault. 2006. Functions of mitochondrial ISCU and cytosolic ISCU in mammalian iron-sulfur cluster biogenesis and iron homeostasis. Cell Metab. 3:199–210.
   PubMed Web of Science ®Google Scholar
• Wu, X., P. B. Alexander, Y. He, M. Kikkawa, P. D. Vogel, and S. L. McKnight. 2005. Mammalian sprouty proteins assemble into large monodisperse particles having the properties of intracellular nanobatteries. Proc. Natl. Acad. Sci. USA 102:14058–14062.
   PubMedGoogle Scholar
• Yarunin, A., V. G. Panse, E. Petfalski, C. Dez, D. Tollervey, and E. C. Hurt. 2005. Functional link between ribosome formation and biogenesis of iron-sulfur proteins. EMBO J. 24:580–588.
   PubMed Web of Science ®Google Scholar
• Zhang, Y., E. R. Lyver, S. A. Knight, E. Lesuisse, and A. Dancis. 2005. Frataxin and mitochondrial carrier proteins, Mrs3p and Mrs4p, cooperate in providing iron for heme synthesis. J. Biol. Chem. 280:19794–19807.
   PubMed Web of Science ®Google Scholar
• Zhang, Y., E. R. Lyver, S. A. Knight, D. Pain, E. Lesuisse, and A. Dancis. 2006. Mrs3p, Mrs4p, and frataxin provide iron for Fe-S cluster synthesis in mitochondria. J. Biol. Chem. 281:22493–22502.
   PubMedGoogle Scholar