REFERENCES
- Brieba, L. G., B. F. Eichman, R. J. Kokoska, S. Doublie, T. A. Kunkel, and T. Ellenberger. 2004. Structural basis for the dual coding potential of 8-oxoguanosine by a high-fidelity DNA polymerase. EMBO J. 23:3452–3461.
- Cho, B. P., F. F. Kadlubar, S. J. Culp, and F. E. Evans. 1990. 15N nuclear magnetic resonance studies in the tautomerism of 8-hydroxy-2′-deoxyguanosine, 8-hydroxyguanosine, and other C8-substituted guanine nucleosides. Chem. Res. Toxicol. 3:445–452.
- Chung, F.-L., L. Zhang, J. E. Ocando, and R. G. Nath. 1999. Role of 1,N2-propanodeoxygunosine adducts as endogenous DNA lesions in rodents and humans. IARC Sci. Publ. 150:45–53.
- Haracska, L., R. E. Johnson, I. Unk, B. B. Phillips, J. Hurwitz, L. Prakash, and S. Prakash. 2001. Targeting of human DNA polymerase ι to the replication machinery via interaction with PCNA. Proc. Natl. Acad. Sci. USA 98:14256–14261.
- Johnson, R. E., L. Prakash, and S. Prakash. 2005. Biochemical evidence for the requirement of Hoogsteen base pairing for replication by human DNA polymerase ι. Proc. Natl. Acad. Sci. USA 102:10466–10471.
- Johnson, R. E., M. T. Washington, L. Haracska, S. Prakash, and L. Prakash. 2000. Eukaryotic polymerases ι and ζ act sequentially to bypass DNA lesions. Nature 406:1015–1019.
- Kouchakdjian, M., V. Bodepudi, S. Shibutani, M. Eisenberg, F. Johnson, A. P. Grollman, and D. J. Patel. 1991. NMR structural studies of the ionizing radiation adduct 7-hydro-8-oxodeoxyguanosine (8-oxo-7H-dG) opposite deoxyadenosine in a DNA duplex. 8-Oxo-7H-dG(syn).dA(anti) alignment at lesion site. Biochemistry 30:1403–1412.
- Leonard, G. A., J. Thomson, W. P. Watson, and T. Brown. 1990. High-resolution structure of a mutagenic lesion in DNA. Proc. Natl. Acad. Sci. USA 87:9573–9676.
- Levine, R. L., H. Miller, A. Grollman, E. Ohashi, H. Ohmori, C. Masutani, F. Hanaoka, and M. Moriya. 2001. Translesion DNA synthesis catalyzed by human Pol η and Pol κ across 1,N6-ethenodeoxyadenosine. J. Biol. Chem. 276:18717–18721.
- Lipscomb, L. A., M. E. Peek, M. L. Morningstar, S. M. Verghis, E. M. Miller, A. Rich, J. M. Essignman, and L. D. Williams. 1995. X-ray structure of a DNA decamer containing 7,8-dihydro-8-oxoguanine. Proc. Natl. Acad. Sci. USA 92:719–723.
- Luczaj, W., and E. Skrzydlewska. 2003. DNA damage caused by lipid peroxidation products. Cell. Mol. Biol. Lett. 8:391–413.
- McAuley-Hecht, K. E., G. A. Leonard, N. J. Gibson, J. B. Thomson, W. P. Watson, W. N. Hunter, and T. Brown. 1994. Crystal structure of a DNA duplex containing 8-hydroxydeoxyguanine-adenine base pairs. Biochemistry 33:10266–10270.
- Nair, D. T., R. E. Johnson, L. Prakash, S. Prakash, and A. K. Aggarwal. 2006. Hoogsteen base pair formation promotes synthesis opposite the 1,N6-ehthenodeoxyadenosine lesion by human DNA polymerase ι. Nat. Struct. Mol. Biol. 13:619–625.
- Nair, D. T., R. E. Johnson, L. Prakash, S. Prakash, and A. K. Aggarwal. 2005. Human DNA polymerase ι incorporates dCTP opposite template G via a G.C+ Hoogsteen base pair. Structure 13:1569–1577.
- Nair, D. T., R. E. Johnson, S. Prakash, L. Prakash, and A. K. Aggarwal. 2006. An incoming nucleotide imposes an anti to syn conformational change on the templating purine in the human DNA polymerase-ι active site. Structure 14:749–755.
- Nair, D. T., R. E. Johnson, S. Prakash, L. Prakash, and A. K. Aggarwal. 2004. Replication by human DNA polymerase ι occurs via Hoogsteen base-pairing. Nature 430:377–380.
- Oda, Y., S. Uesugi, M. Ikehara, S. Nishimura, Y. Kawase, H. Ishikawa, H. Inoue, and E. Ohtsuka. 1991. NMR studies of a DNA containing 8-hydroxydeoxyguanosine. Nucleic Acids Res. 19:1407–1412.
- Tan, H.-B., P. F. Swann, and E. M. Chance. 1994. Kinetic analysis of the coding properties of O6-methylguanine in DNA: the crucial role of the conformation of the phosphodiester bond. Biochemistry 33:5335–5346.
- Tissier, A., J. P. McDonald, E. G. Frank, and R. Woodgate. 2000. Pol ι, a remarkably error-prone human DNA polymerase. Genes Dev. 14:1642–1650.
- Uesugi, S., and M. Ikehara. 1977. Carbon-13 magnetic resonance spectra of 8-substituted purine nucleosides. Characteristic shifts for the syn conformation. J. Am. Chem. Soc. 99:3250–3253.
- Washington, M. T., R. E. Johnson, L. Prakash, and S. Prakash. 2004. Human DNA polymerase ι utilizes different nucleotide incorporation mechanisms dependent upon the template base. Mol. Cell. Biol. 24:936–943.
- Washington, M. T., I. G. Minko, R. E. Johnson, W. T. Wolfle, T. M. Harris, R. S. Lloyd, S. Prakash, and L. Prakash. 2004. Efficient and error-free replication past a minor groove DNA adduct by the sequential action of human DNA polymerases ι and κ. Mol. Cell. Biol. 24:5687–5693.
- Williams, L. D., and B. R. Shaw. 1987. Protonated base pairs explain the ambiguous pairing properties of O6-methylguanine. Proc. Natl. Acad. Sci. USA 84:1779–1783.
- Wolfle, W. T., R. E. Johnson, I. G. Minko, R. S. Lloyd, S. Prakash, and L. Prakash. 2005. Human DNA polymerase ι promotes replication through a ring-closed minor-groove adduct that adopts a syn conformation in DNA. Mol. Cell. Biol. 25:8748–8754.
- Wolfle, W. T., R. E. Johnson, I. G. Minko, R. S. Lloyd, S. Prakash, and L. Prakash. 2006. Replication past a trans-4-hydroxynonenal minor-groove adduct by the sequential action of human DNA polymerase ι and κ. Mol. Cell. Biol. 26:381–386.
- Zhang, Y., F. Yuan, X. Wu, and Z. Wang. 2000. Preferential incorporation of G opposite template T by the low-fidelity human DNA polymerase ι. Mol. Cell. Biol. 20:7099–7108.