Fine Mapping of 28S rRNA Sites Specifically Cleaved in Cells Undergoing Apoptosis

REFERENCES

• Bachellerie, J.-P., and L.-H. Qu. 1993. Ribosomal RNA probes for detection and identification of species, p. 249–263. In J. E. Hyde (ed.), Methods in molecular biology, vol. 21. Protocols in molecular parasitology. Humana Press Inc., Totowa, N.J.
   Google Scholar
• Bøe, R., B. T. Gjertsen, O. K. Vintermyr, G. Houge, M. Lanotte, and S. O. Døskeland. 1991. The protein phosphatase inhibitor okadaic acid induces morphological changes typical of apoptosis in mammalian cells. Exp. Cell Res. 195:237–246.
   PubMed Web of Science ®Google Scholar
• Chan, Y.-L., J. Olvera, and I. G. Wool. 1983. The structure of rat 28S ribosomal ribonucleic acid inferred from the sequence of nucleotides in a gene. Nucleic Acids Res. 11:7819–7830.
   PubMedGoogle Scholar
• Chomczynsky, P., and N. Sacchi. 1987. Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal. Biochem. 162:156–159.
   PubMed Web of Science ®Google Scholar
• Clarke, P. G. H. 1990. Developmental cell death: morphological diversity and multiple mechanisms. Anat. Embryol. 181:195–213.
   PubMedGoogle Scholar
• Clem, R. J., and L. K. Miller. 1993. Apoptosis reduces both the in vitro replication and the in vivo infectivity of a baculovirus. J. Virol. 67:3730–3738.
   PubMed Web of Science ®Google Scholar
• Clem, R. J., and L. K. Miller. 1994. Induction and inhibition of apoptosis by insect viruses, p. 89–110. In L. D. Tomei, and F. O. Cope (ed.), Apoptosis II: the molecular basis of apoptosis in disease. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
   Google Scholar
• Clouston, W. M., and J. F. R. Kerr. 1985. Apoptosis, lymphocytotoxicity and the containment of viral infections. Med. Hypoth. 18:399.
   PubMedGoogle Scholar
• Cohen, J. J. 1993. Apoptosis. Immunol. Today 14:126–130.
   PubMedGoogle Scholar
• Delic, J., M. Coppeymoisan, and H. Magdelenat. 1993. Gamma-ray-induced transcription and apoptosis-associated loss of 28S rRNA in interphase human lymphocytes. Int. J. Rad. Biol. 64:39–46.
   PubMed Web of Science ®Google Scholar
• Driscoll, M. 1992. Molecular genetics of cell death in the nematode Cae-norhabditis elegans. J. Neurobiol. 23:1327–1351.
   PubMedGoogle Scholar
• Endo, Y., and K. Tsurugi. 1987. RNA N-glycosidase activity of ricin A-chain. J. Biol. Chem. 262:8128–8130.
   PubMed Web of Science ®Google Scholar
• Engberg, J., H. Nielsen, G. Lenaers, O. Murayama, H. Fujitani, and T. Higashinakagawa. 1990. Comparison of primary and secondary 26S rRNA structure in two Tetrahymena species: evidence for a strong evolutionary and structural constraint in expansion segments. J. Mol. Evol. 30:514–521.
   PubMedGoogle Scholar
• Floyd-Smith, G., E. Slattery, and P. Lengyel. 1981. Interferon action: RNA cleavage pattern of a (29-59)oligoadenylate-dependent endonuclease. Science 212:1030–1031.
   PubMed Web of Science ®Google Scholar
• Gjertsen, B. T., L. I. Cressey, S. Ruchaud, G. Houge, M. Lanotte, and S. O. Døskeland. 1994. Multiple apoptotic death types triggered through activation of separate pathways by cAMP and inhibitors of protein phosphatases in one (IPC leukemia) cell line. J. Cell. Sci. 107:3363–3377.
   PubMed Web of Science ®Google Scholar
• Gonzales, I. L., J. L. Gorski, T. J. Campen, D. J. Dorney, J. M. Erickson, J. E. Sylvester, and R. D. Schmickel. 1985. Variation among human 28S ribosomal RNA genes. Proc. Natl. Acad. Sci. USA 82:7666–7670.
   PubMedGoogle Scholar
• Gutell, R. R., and G. E. Fox. 1988. A compilation of large subunit RNA sequences in a structural form. Nucleic Acids Res. 16(Suppl.):r175–r216.
   PubMedGoogle Scholar
• Han, H., A. Schepartz, M. Pellegrini, and P. B. Dervan. 1994. Mapping RNA regions in eukaryotic ribosomes that are accessible to methidiumpropyl-EDTA ζ Fe(II) and EDTA ζ Fe(II). Biochemistry 33:9831–9844.
   PubMedGoogle Scholar
• Hancock, J. M., and G. A. Dover. 1988. Molecular coevolution among cryptically simple expansion segments of eukaryotic 26S/28S rRNAs. Mol. Biol. Evol. 5:377–391.
   PubMedGoogle Scholar
• Holmberg, L., Y. Melander, and O. Nygard. 1994. Probing the structure of mouse Ehrlich ascites cell 5.8S, 18S and 28S ribosomal RNA in situ. Nucleic Acids Res. 22:1374–1382.
   PubMedGoogle Scholar
• Houge, G., S. O. Døskeland, R. Bøe, and M. Lanotte. 1993. Selective cleavage of 28S rRNA variable regions V3 and V13 in myeloid leukemia cell apop-tosis. FEBS Lett. 315:16–20.
   PubMed Web of Science ®Google Scholar
• Houge, G., O. K. Vintermyr, and S. O. Døskeland. 1990. The expression of cAMP-dependent protein kinase in primary rat hepatocyte cultures. Cyclic AMP down-regulates its own effector system by decreasing the amount of catalytic subunit and increasing the mRNAs for the inhibitory (R) subunits of cAMP-dependent protein kinase. Mol. Endocrinol. 4:481–488.
   Google Scholar
• Jensen, P. H., L. I. Cressey, B. T. Gjertsen, P. Madsen, G. Mellgren, P. Hokland, J. Gliemann, S. O. Døskeland, M. Lanotte, and O. K. Vintermyr. 1994. Cleaved intracellular plasminogen activator inhibitor 2 in human my-eloleukemia cells is a marker of apoptosis. Br. J. Cancer 70:834–840.
   PubMedGoogle Scholar
• Kaufmann, S. H., S. Desnoyers, Y. Ottaviano, N. E. Davidson, and G. G. Poirier. 1993. Specific proteolytic cleavage of poly(ADP-ribose) polymerase—an early marker of chemotheraphy-induced apoptosis. Cancer Res. 53:3976–3985.
   PubMed Web of Science ®Google Scholar
• Lanotte, M., S. Hermouet, G. Gombaud-Saintonge, and I. Dobo. 1986. On the growth regulation of the rat promyelocytic leukemia (BNML): growth inhibition and eradication of clonogenic cells by cholera toxin. Leukemia Res. 10:1319–1326.
   PubMedGoogle Scholar
• Lanotte, M., V. Martin-Thouvenin, S. Najman, P. Ballerini, F. Valensi, and R. Berger. 1991. NB4, a maturation inducible cell line with t(15;17) marker isolated from a human acute promyelocytic leukemia (M3). Blood 77:1080–1086.
   PubMed Web of Science ®Google Scholar
• Lanotte, M., J. B. Riviere, S. Hermouet, G. Houge, O. K. Vintermyr, B. T. Gjertsen, and S. O. Døskeland. 1991. Programmed cell death (apoptosis) is induced rapidly and with positive cooperativity by activation of cyclic aden-osine monophosphate-kinase I in a myeloid leukemia cell line. J. Cell. Physiol. 146:73–80.
   PubMed Web of Science ®Google Scholar
• Lee, J. C., H. H. Chen, H. L. Wei, and Y. C. Chao. 1993. Superinfection-induced apoptosis and its correlation with the reduction of viral progeny in cells persistently infected with Hz-1 baculovirus. J. Virol. 67:6989–6994.
   PubMedGoogle Scholar
• Lee, S. B., and M. Eesteban. 1994. The interferon-inducible double-stranded RNA-activated protein kinase induces apoptosis. Virology 199:491–496.
   PubMed Web of Science ®Google Scholar
• Leffers, H., and A. H. Andersen. 1993. The sequence of 28S ribosomal RNA varies within and between human cell lines. Nucleic Acids Res. 21:1449–1455.
   PubMedGoogle Scholar
• Lenaers, G., L. Maroteaux, B. Michot, and M. Herzog. 1989. Dinoflagellates in evolution. A molecular phylogenetic analysis of large subunit ribosomal RNA. J. Mol. Evol. 29:40–51.
   PubMed Web of Science ®Google Scholar
• Linares, A. R., J. M. Hancock, and G. A. Dover. 1991. Secondary structure constraints on the evolution of Drosophila 28S ribosomal RNA expansion segments. J. Mol. Biol. 219:381–390.
   PubMedGoogle Scholar
• Martz, E., and D. M. Howell. 1989. CTL: virus control cells first and cytolytic cells second? Immunol. Today 10:79–86.
   Google Scholar
• McConkey, D., P. Hartzell, M. Jondal, and S. Orreniu. 1989. Inhibition of DNA fragmentation in thymocytes and isolated thymocyte nuclei by agents that stimulate protein kinase C. J. Biol. Chem. 264:13399–13402.
   PubMed Web of Science ®Google Scholar
• Michot, B., and J.-P. Bachellerie. 1987. Comparisons of large subunit rRNAs reveal some eukaryote-specific elements of secondary structure. Biochimie 69:11–23.
   PubMedGoogle Scholar
• Oberhammer, F., J. W. Wilson, C. Dive, I. D. Morris, J. A. Hickman, A. E. Wakeling, P. R. Walker, and M. Sikorska. 1993. Apoptotic death in epithelial cells—cleavage of DNA to 300 and/or 50 kb fragments prior to or in the absence of internucleosomal fragmentation. EMBO J. 12:3679–3684.
   PubMed Web of Science ®Google Scholar
• Oren, M. 1992. The involvement of oncogenes and tumor supressor genes in the control of apoptosis. Cancer Metastasis Rev. 11:141–148.
   PubMedGoogle Scholar
• Pan, T., D. M. Long, and O. C. Uhlenbeck. 1993. Divalent metal ions in RNA folding and catalysis, p. 271–302. In R. F. Gesteland, and J. F. Atkins (ed.), The RNA world. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
   Google Scholar
• Raff, M. C. 1992. Social controls on cell survival and cell death. Nature (London) 356:397–399.
   PubMed Web of Science ®Google Scholar
• Raué, H. A., J. Klootwijk, and W. Musters. 1988. Evolutionary conservation of structure and function of high molecular weight ribosomal RNA. Prog. Biophys. Mol. Biol. 51:77–129.
   PubMedGoogle Scholar
• Robaye, B., A. P. Døskeland, N. Suarez-Huerta, S. O. Døskeland, and J. E. Dumont. 1994. Apoptotic cell death analyzed at the molecular level by two-dimensional gel electrophoresis. Electrophoresis 15:503–510.
   PubMed Web of Science ®Google Scholar
• Robaye, B., R. Mosselmans, W. Fiers, J. E. Dumont, and P. Galand. 1991. Tumor necrosis factor induces apoptosis (programmed cell death) in normal endothelial cells in vitro. Am. J. Pathol. 138:447–453.
   PubMed Web of Science ®Google Scholar
• Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
   Google Scholar
• Samuel, C. E. 1979. Mechanisms of interferon action. Kinetics of interferon action in mouse L929 cells: phosphorylation of protein synthesis initiation factor eIF-2 and ribosome-associated protein P1. Virology 93:281–285.
   Google Scholar
• Schwartz, L. M., and B. A. Osborne. 1993. Programmed cell death, apoptosis and killer genes. Immunol. Today 14:582–590.
   PubMedGoogle Scholar
• Schwartzman, R. A., and A. Cidlowski. 1991. Internucleosomal deoxyribo-nucleic acid cleavage activity in apoptotic thymocytes: detection and endocrine regulation. Endocrinology 128:1190–1197.
   PubMed Web of Science ®Google Scholar
• Silverman, R. H., P. J. Cayley, M. Knight, C. S. Gilbert, and I. M. Kerr. 1982. Control of the ppp(A29p)nA system in HeLa cells. Eur. J. Biochem. 124: 131–138.
   PubMedGoogle Scholar
• Skalka, M., J. Matyasova, and M. Cejkova. 1976. DNA in chromatin of irradiated lymphoid tissue degrades in vivo into regular fragments. FEBS Lett. 72:271–274.
   PubMed Web of Science ®Google Scholar
• Sun, D. Y., J. S., L.-M. Zheng, D. M. Ojcius, and J. D.-E. Young. 1994. Separate metabolic pathways leading to DNA fragmentation and apoptotic chromatin condensation. J. Exp. Med. 179:559–568.
   PubMedGoogle Scholar
• Vaux, L. D., G. Haecker, and A. Strasser. 1994. An evolutionary perspective on apoptosis. Cell 76:777–779.
   PubMed Web of Science ®Google Scholar
• White, E., and L. R. Gooding. 1994. Regulation of apoptosis by human adenoviruses, p. 111–141. In L. D. Tomei, and F. O. Cope (ed.), Apoptosis II: the molecular basis of apoptosis in disease. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
   Google Scholar
• Wreschner, D. H., T. C. James, R. H. Silverman, and I. M. Kerr. 1981. Ribosomal RNA cleavage, nuclease activation and 2-5A (ppp(A29p)nA) in interferon-treated cells. Nucleic Acids Res. 9:1571–1581.
   PubMed Web of Science ®Google Scholar
• Wyllie, A. H. 1980. Glucocorticoid-induced thymocyte apoptosis is associated with endogenous nuclease activation. Nature (London) 284:555.
   PubMed Web of Science ®Google Scholar
• Wyllie, A. H., J. F. R. Kerr, and A. R. Currie. 1980. Cell death: the signifi-cance of apoptosis. Int. Rev. Cytol. 68:251–305.
   PubMedGoogle Scholar