Residues in the Swi5 Zinc Finger Protein That Mediate Cooperative DNA Binding with the Pho2 Homeodomain Protein

REFERENCES

• Ausubel, F. M., R. Brent, R. E. Kingston, D. E. Moore, J. G. Seidman, J. A. Smith, and K. Struhl 1987. Current protocols in molecular biology. John Wiley & Sons, Inc., New York, N.Y.
   Google Scholar
• Barbaric, S., M. Munsterkotter, J. Svaren, and W. Horz 1996. The homeodomain protein Pho2 and the basic-helix-loop-helix protein Pho4 bind DNA cooperatively at the yeast PHO5 promoter. Nucleic Acids Res. 24: 4479–4486.
   PubMedGoogle Scholar
• Bobola, N., R. P. Jansen, T. H. Shin, and K. Nasmyth 1996. Asymmetric accumulation of Ash1p in postanaphase nuclei depends on a myosin and restricts yeast mating-type switching to mother cells. Cell 84: 699–709.
   PubMedGoogle Scholar
• Brazas, R. M., L. T. Bhoite, M. D. Murphy, Y. Yu, Y. Chen, D. W. Neklason, and D. J. Stillman 1995. Determining the requirements for cooperative DNA binding by Swi5p and Pho2p (Grf10p/Bas2p) at the HO promoter. J. Biol. Chem. 270: 29151–29161.
   PubMedGoogle Scholar
• Brazas, R. M., and D. J. Stillman 1993. Identification and purification of a protein that binds DNA cooperatively with the yeast SWI5 protein. Mol. Cell. Biol. 13: 5524–5537.
   PubMedGoogle Scholar
• Brazas, R. M., and D. J. Stillman 1993. The Swi5 zinc finger and the Grf10 homeodomain proteins bind DNA cooperatively at the Yeast HO promoter. Proc. Natl. Acad. Sci. USA 90: 11237–11241.
   PubMedGoogle Scholar
• Breeden, L., and K. Nasmyth 1987. Cell cycle control of the yeast HO gene: cis- and trans-acting regulators. Cell 48: 389–397.
   PubMedGoogle Scholar
• Butler, G., and D. J. Thiele 1991. ACE2, an activator of yeast metallothionein expression which is homologous to SWI5. Mol. Cell. Biol. 11: 476–485.
   PubMedGoogle Scholar
• Daignan-Fornier, B., and G. R. Fink 1992. Coregulation of purine and histidine biosynthesis by the transcriptional activators BAS1 and BAS2. Proc. Natl. Acad. Sci. USA 89: 6746–6750.
   PubMedGoogle Scholar
• Dohrmann, P. R., G. Butler, K. Tamai, S. Dorland, J. R. Greene, D. J. Thiele, and D. J. Stillman 1992. Parallel pathways of gene regulation: the homologous regulators SWI5 and ACE2 differentially control transcription of HO and chitinase. Genes Dev. 6: 93–104.
   PubMed Web of Science ®Google Scholar
• Dohrmann, P. R., W. P. Voth, and D. J. Stillman 1996. Role of negative regulation in promoter specificity of the homologous transcriptional activators Ace2p and Swi5p. Mol. Cell. Biol. 16: 1746–1758.
   PubMedGoogle Scholar
• Dutnall, R. N. 1995. Structural and functional studies of a zinc finger DNA-binding domain. Ph.D. Dissertation. University of Cambridge, Cambridge, United Kingdom.
   Google Scholar
• Dutnall, R. N., D. Neuhaus, and D. Rhodes 1996. The solution structure of the first zinc finger domain of SWI5: a novel structural extension to a common fold. Structure 4: 599–611.
   PubMedGoogle Scholar
• Estojak, J., R. Brent, and E. A. Golemis 1995. Correlation of two-hybrid affinity data with in vitro measurements. Mol. Cell. Biol. 15: 5820–5829.
   PubMed Web of Science ®Google Scholar
• Fields, S., and O. Song 1989. A novel genetic system to detect protein-protein interactions. Nature 340: 245–246.
   PubMed Web of Science ®Google Scholar
• Herskowitz, I., B. Andrews, W. Kruger, J. Ogas, A. Sil, C. Coburn, and C. Peterson 1992. Integration of multiple regulatory inputs in the control of HO expression in yeast Transcriptional regulation. In: McKnight, S. L., and K. R. Yamamoto949–974Cold Spring Harbor Laboratory Press, Plainview, N.Y.
   Google Scholar
• Hirst, K., F. Fisher, P. C. McAndrew, and C. R. Goding 1994. The transcription factor, the Cdk, its cyclin and their regulator: directing the transcriptional response to a nutritional signal. EMBO J. 13: 5410–5420.
   PubMedGoogle Scholar
• Iyer, V., and K. Struhl 1996. Absolute mRNA levels and transcriptional initiation rates in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 93: 5208–5212.
   PubMed Web of Science ®Google Scholar
• James, P., J. Halladay, and E. A. Craig 1996. Genomic libraries and a host strain designed for highly efficient two-hybrid selection in yeast. Genetics 144: 1425–1436.
   PubMed Web of Science ®Google Scholar
• Kasten, M. M., D. E. Ayer, and D. J. Stillman 1996. SIN3-dependent transcriptional repression by interaction with the Mad1 DNA-binding protein. Mol. Cell. Biol. 16: 4215–4221.
   PubMedGoogle Scholar
• Knapp, D., L. Bhoite, D. J. Stillman, and K. Nasmyth 1996. The transcription factor Swi5 regulates expression of the cyclin kinase inhibitor p40-SIC1. Mol. Cell. Biol. 16: 5701–5707.
   PubMed Web of Science ®Google Scholar
• Kovacech, B., K. Nasmyth, and T. Schuster 1996. EGT2 gene transcription is induced predominantly by Swi5 in early G1. Mol. Cell. Biol. 16: 3264–3274.
   PubMedGoogle Scholar
• Leung, D. W., E. Chen, and D. V. Goeddel 1989. A method for random mutagenesis of a defined DNA segment using a modified polymerase chain reaction. Technique J. Methods Cell Mol. Biol. 1: 11–15.
   Google Scholar
• McBride, H. J., R. M. Brazas, Y. Yu, K. Nasmyth, and D. J. Stillman 1997. Long-range interactions at the HO promoter. Mol. Cell. Biol. 17: 2669–2678.
   PubMedGoogle Scholar
• McBride, H. J., and D. J. Stillman. Regions of the homologous Swi5p and Ace2p transcription factors required for specific activation of the yeast HO and CTS1 genes identified with chimeric fusions. Submitted for publication.
   Google Scholar
• Measday, V., H. J. McBride, J. Moffat, D. J. Stillman, and B. Andrews. Interactions between the Pho85p/Pcl2p cyclin dependent kinase and the Swi5p transcription factor. Submitted for publication.
   Google Scholar
• Moll, T., G. Tebb, U. Surana, H. Robitsch, and K. Nasmyth 1991. The role of phosphorylation and the CDC28 protein kinase in cell cycle-regulated nuclear import of the S. cerevisiae transcription factor SWI5. Cell 66: 743–758.
   PubMed Web of Science ®Google Scholar
• Muhlrad, D., R. Hunter, and R. Parker 1992. A rapid method for localized mutagenesis of yeast genes. Yeast 8: 79–82.
   PubMed Web of Science ®Google Scholar
• Nasmyth, K. 1985. At least 1400 base pairs of 5′-flanking DNA is required for the correct expression of the HO gene in yeast. Cell 42: 213–223.
   PubMed Web of Science ®Google Scholar
• Nasmyth, K. 1993. Regulating the HO endonuclease in yeast. Curr. Opin. Genet. Dev. 3: 286–294.
   PubMedGoogle Scholar
• Neuhaus, D., Y. Nakaseko, J. W. R. Schwabe, and A. Klug 1992. Solution structures of two zinc-finger domains from SWI5, obtained using two-dimensional 1H NMR spectroscopy; a zinc finger structure with a third strand of β-sheet. J. Mol. Biol. 228: 637–651.
   PubMedGoogle Scholar
• Piatti, S., C. Lengauer, and K. Nasmyth 1995. Cdc6 is an unstable protein whose de novo synthesis in G1 is important for the onset of S phase and for preventing a ‘reductional’ anaphase in the budding yeast Saccharomyces cerevisiae. EMBO J. 14: 3788–3799.
   PubMed Web of Science ®Google Scholar
• Rothstein, R. 1991. Targeting, disruption, replacement, and allele rescue: integrative DNA transformation in yeast. Methods Enzymol. 194: 281–302.
   PubMed Web of Science ®Google Scholar
• Ruden, D. M., J. Ma, K. Li, K. Wood, and M. Ptashne 1992. Generating yeast transcriptional activators containing no yeast protein sequences. Nature 350: 250–252.
   Google Scholar
• Sherman, F. 1991. Getting started with yeast. Methods Enzymol. 194: 1–21.
   PubMedGoogle Scholar
• Sikorski, R. S., and P. Hieter 1989. A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae. Genetics 122: 19–27.
   PubMed Web of Science ®Google Scholar
• Tebb, G., T. Moll, C. Dowser, and K. Nasmyth 1993. SWI5 instability may be necessary but is not sufficient for asymmetric HO expression in yeast. Genes Dev. 7: 517–528.
   PubMed Web of Science ®Google Scholar
• Thomas, B. J., and R. Rothstein 1989. Elevated recombination rates in transcriptionally active DNA. Cell 56: 619–630.
   PubMed Web of Science ®Google Scholar
• Tice-Baldwin, K., G. R. Fink, and K. T. Arndt 1989. BAS1 has a Myb motif and activates HIS4 transcription only in combination with BAS2. Science 246: 931–935.
   PubMedGoogle Scholar
• Toone, W. M., A. L. Johnson, G. R. Banks, J. H. Toyn, D. Stuart, C. Wittenberg, and L. H. Johnston 1995. Rme1, a negative regulator of meiosis, is also a positive activator of G1 cyclin gene expression. EMBO J. 14: 5824–5832.
   PubMedGoogle Scholar
• Toyn, J. H., A. L. Johnson, J. D. Donovan, W. M. Toone, and L. H. Johnson 1996. The Swi5 transcription factor of Saccharomyces cerevisiae controls exit from mitosis by induction of the cdk-inhibitor Sic1 in telophase. Genetics 145: 85–96.
   Google Scholar
• Zhang, F., M. Kirouac, N. Zhu, A. G. Hinnebusch, and R. J. Rolfes 1997. Evidence that complex formation by Bas1p and Bas2p (Pho2p) unmasks the activation function of Bas1p in an adenine-repressible step of ADE gene transcription. Mol. Cell. Biol. 17: 3272–3283.
   PubMedGoogle Scholar