Homology-Dependent Maternal Inhibition of Developmental Excision of Internal Eliminated Sequences in Paramecium tetraurelia

REFERENCES

• Berger, J. D. 1973. Nuclear differentiation and nucleic acid synthesis in well-fed exconjugants of Paramecium aurelia. Chromosoma 42: 247–268.
   PubMed Web of Science ®Google Scholar
• Chalker, D. L., and M.-C. Yao 1996. Non-Mendelian, heritable blocks to DNA rearrangement are induced by loading the somatic nucleus of Tetrahymena with germ line-limited DNA. Mol. Cell. Biol. 16: 3658–3667.
   PubMedGoogle Scholar
• Church, G. M., and W. Gilbert 1984. Genomic sequencing. Proc. Natl. Acad. Sci. USA 81: 1991–1995.
   PubMed Web of Science ®Google Scholar
• Cogoni, C., J. T. Irelan, M. Schumacher, E. U. Selker, and G. Macino 1996. Transgene silencing of the al-1 gene in vegetative cells of Neurospora is mediated by a cytoplasmic effector and does not depend on DNA-DNA interactions or DNA methylation. EMBO J. 15: 3153–3163.
   PubMed Web of Science ®Google Scholar
• Coyne, R. S., D. L. Chalker, and M.-C. Yao 1996. Genome downsizing during ciliate development: nuclear division of labor through chromosome restructuring. Annu. Rev. Genet. 30: 557–578.
   PubMedGoogle Scholar
• Dubrana, K., A. Le Mouël, and L. Amar 1997. Deletion endpoint allele specificity in the developmentally regulated elimination of an internal sequence (IES) in Paramecium. Nucleic Acids Res. 25: 2448–2454.
   PubMedGoogle Scholar
• Dubrana, K., and L. Amar. 1998. Personal communication.
   Google Scholar
• Duharcourt, S., A. Butler, and E. Meyer 1995. Epigenetic self-regulation of the excision of an internal eliminated sequence in Paramecium tetraurelia. Genes Dev. 9: 2065–2077.
   PubMedGoogle Scholar
• Epstein, L. M., and J. D. Forney 1984. Mendelian and non-Mendelian mutations affecting surface antigen expression in Paramecium tetraurelia. Mol. Cell. Biol. 4: 1583–1590.
   PubMed Web of Science ®Google Scholar
• Fire, A., S. Xu, M. K. Montgomery, S. A. Kostas, S. E. Driver, and C. C. Mello 1998. Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature 391: 806–811.
   PubMed Web of Science ®Google Scholar
• Gilley, D., Preer, J. R.Jr., K. J. Aufderheide, and B. Polisky 1988. Autonomous replication and addition of telomerelike sequences to DNA microinjected into Paramecium tetraurelia macronuclei. Mol. Cell. Biol. 8: 4765–4772.
   PubMed Web of Science ®Google Scholar
• Godiska, R. D., K. J. Aufderheide, D. Gilley, P. Hendrie, T. Fitzwater, L. B. Preer, B. Polisky, Preer J. R., Jr. 1987. Transformation of Paramecium by microinjection of a cloned serotype gene. Proc. Natl. Acad. Sci. USA 84: 7590–7594.
   PubMed Web of Science ®Google Scholar
• Henikoff, S., and M. A. Matzke 1997. Exploring and explaining epigenetics effects. Trends Genet. 13: 293–295.
   PubMed Web of Science ®Google Scholar
• Jaraczewski, J. W., and C. L. Jahn 1993. Elimination of Tec elements involves a novel excision process. Genes Dev. 7: 95–105.
   PubMedGoogle Scholar
• Katinka, M. D., and F. M. Bourgain 1992. Interstitial telomeres are hotspots for illegitimate recombination with DNA molecules injected into the macronucleus of Paramecium primaurelia. EMBO J. 11: 725–732.
   PubMedGoogle Scholar
• Kim, C. S., Preer, J. R.Jr., and B. Polisky 1992. Bacteriophage lambda fragments replicate in the Paramecium macronucleus: absence of active copy number control. Dev. Genet. 13: 97–102.
   PubMedGoogle Scholar
• Klobutcher, L. A., L. R. Turner, and J. LaPlante 1993. Circular forms of developmentally excised DNA in Euplotes crassus have a heteroduplex junction. Genes Dev. 7: 84–94.
   PubMedGoogle Scholar
• Klobutcher, L. A., and G. Herrick 1995. Consensus inverted terminal repeat sequence of Paramecium IESs: resemblance to termini of Tc1-related and Euplotes Tec transposons. Nucleic Acids Res. 23: 2006–2013.
   PubMedGoogle Scholar
• Klobutcher, L. A., and G. Herrick 1997. Developmental genome reorganization in ciliated protozoa: the transposon link. Prog. Nucleic Acids Res. Mol. Biol. 56: 1–62.
   PubMedGoogle Scholar
• Kumpatla, S. P., M. B. Chandrasekharan, L. M. Iyer, G. Li, and T. C. Hall 1998. Genome intruder scanning and modulation systems and transgene silencing. Trends Plant Sci. 3: 97–104.
   Google Scholar
• Leeck, C. L., and J. D. Forney 1994. The upstream region is required but not sufficient to control mutually exclusive expression of Paramecium surface antigen genes. J. Biol. Chem. 269: 31283–31288.
   PubMedGoogle Scholar
• Ling, K.-Y., B. Vaillant, W. J. Haynes, Y. Saimi, and C. Kung 1998. A comparison of internal eliminated sequences in the genes that encode two K(+)-channel isoforms in Paramecium tetraurelia. J. Eukaryot. Microbiol. 45: 459–465.
   PubMedGoogle Scholar
• Martin, L. D., S. Pollack, Preer J. R., Jr., and B. Polisky 1994. DNA sequence requirements for the regulation of immobilization antigen A expression in Paramecium tetraurelia. Dev. Genet. 15: 443–451.
   PubMedGoogle Scholar
• Mayer, K. M., K. Mikami, and J. D. Forney 1998. A mutation in Paramecium tetraurelia reveals functional and structural features of developmentally excised DNA elements. Genetics 148: 139–149.
   PubMedGoogle Scholar
• Mayer, K. M., and J. D. Forney. 1998. Personal communication.
   Google Scholar
• Meyer, E. 1992. Induction of specific macronuclear developmental mutations by microinjection of a cloned telomeric gene in Paramecium primaurelia. Genes Dev. 6: 211–222.
   PubMedGoogle Scholar
• Meyer, E., and S. Duharcourt 1996. Epigenetic programming of developmental genome rearrangements in ciliates. Cell 87: 9–12.
   PubMedGoogle Scholar
• Meyer, E., and S. Duharcourt 1996. Epigenetic regulation of programmed genomic rearrangements in Paramecium aurelia. J. Eukaryot. Microbiol. 43: 453–461.
   PubMedGoogle Scholar
• Meyer, E., and A.-M. Keller 1996. A Mendelian mutation affecting mating-type determination also affects developmental genomic rearrangements in Paramecium tetraurelia. Genetics 143: 191–202.
   PubMedGoogle Scholar
• Meyer, E., A. Butler, K. Dubrana, S. Duharcourt, and F. Caron 1997. Sequence-specific epigenetic effects of the maternal somatic genome on developmental rearrangements of the zygotic genome in Paramecium primaurelia. Mol. Cell. Biol. 17: 3589–3599.
   PubMedGoogle Scholar
• Nielsen, E., Y. You, and J. Forney 1991. Cysteine residue periodicity is a conserved structural feature of variable surface proteins from Paramecium tetraurelia. J. Mol. Biol. 222: 835–841.
   PubMedGoogle Scholar
• Palauqui, J.-C., T. Elmayan, J.-M. Pollien, and H. Vaucheret 1997. Systemic acquired silencing: transgene-specific post-transcriptional silencing is transmitted by grafting from silenced stocks to non-silenced scions. EMBO J. 16: 4738–4745.
   PubMed Web of Science ®Google Scholar
• Prat, A. 1990. Conserved sequences flank variable tandem repeats in two alleles of the G surface protein of Paramecium primaurelia. J. Mol. Biol. 211: 521–535.
   PubMedGoogle Scholar
• Prescott, D. M. 1994. The DNA of ciliated protozoa. Microbiol. Rev. 58: 233–267.
   PubMedGoogle Scholar
• Ruiz, F., L. Vayssié, C. Klotz, L. Sperling, and L. Madeddu 1998. Homology-dependent gene silencing in Paramecium. Mol. Biol. Cell 9: 931–943.
   PubMed Web of Science ®Google Scholar
• Sambrook, J., E. F. Fritsch, and T. Maniatis 1989. Molecular cloning: a laboratory manual2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
   Google Scholar
• Saveliev, S. V., and M. M. Cox 1996. Developmentally programmed DNA deletion in Tetrahymena thermophila by a transposition-like mechanism. EMBO J. 15: 2858–2869.
   PubMedGoogle Scholar
• Scott, J., C. Leeck, and J. Forney 1994. Analysis of the micronuclear B type surface protein gene in Paramecium tetraurelia. Nucleic Acids Res. 22: 5079–5084.
   PubMedGoogle Scholar
• Sonneborn, T. M. 1970. Methods in Paramecium research. Methods Cell Physiol. 4: 241–339.
   Google Scholar
• Sonneborn, T. M. Paramecium aurelia Handbook of genetics: plants, plant viruses and protists In: King, R. C.21974469–594Plenum Press, New York, N.Y.
   Google Scholar
• Steele, C. J., G. A. Barkocy-Gallagher, L. B. Preer, Preer J. R., Jr. 1994. Developmentally excised sequences in micronuclear DNA of Paramecium. Proc. Natl. Acad. Sci. USA 91: 2255–2259.
   PubMedGoogle Scholar
• Vayssié, L., L. Sperling, and L. Madeddu 1997. Characterization of multigene families in the micronuclear genome of Paramecium tetraurelia reveals a germline specific sequence in an intron of a centrin gene. Nucleic Acids Res. 25: 1036–1041.
   PubMedGoogle Scholar
• Vayssié, L., and L. Madeddu. 1998. Personal communication.
   Google Scholar
• Wassenegger, M., and T. Pélissier 1998. A model for RNA-mediated gene silencing in higher plants. Plant Mol. Biol. 37: 349–362.
   PubMedGoogle Scholar