Multiple Orientation-Dependent, Synergistically Interacting, Similar Domains in the Ribosomal DNA Replication Origin of the Fission Yeast, Schizosaccharomyces pombe

REFERENCES

• Balzi, E., A. Di Pietro, A. Goffeau, H. van Heerikhuizen, and J. Klootwijk 1985. The RNA polymerase I initiation site and the external transcribed spacer of the fission yeast Schizosaccharomyces pombe ribosomal RNA genes. Gene 39: 165–172.
   PubMedGoogle Scholar
• Bell, S. P., and B. Stillman 1992. ATP dependent recognition of eukaryotic origins of DNA replication by a multi-protein complex. Nature 357: 128–134.
   PubMed Web of Science ®Google Scholar
• Berbee, M. L., and J. W. Taylor 1993. Dating the evolutionary radiations of the true fungi. Can. J. Bot. 71: 1114–1127.
   Google Scholar
• Broach, J. R., Y.-Y. Li, J. Feldman, M. Jayaram, J. Abraham, K. A. Nasmyth, and J. B. Hicks 1983. Localization and sequence analysis of yeast origins of DNA replication. Cold Spring Harbor Symp. Qual. Biol. 47: 1165–1173.
   PubMedGoogle Scholar
• Clyne, R. K., and T. J. Kelly 1995. Genetic analysis of an ARS element from the fission yeast Schizosaccharomyces pombe. EMBO J. 14: 6348–6357.
   PubMed Web of Science ®Google Scholar
• Diffley, J. F. X., and J. H. Cocker 1992. Protein-DNA interactions at a yeast replication origin. Nature 357: 169–172.
   PubMed Web of Science ®Google Scholar
• Dubey, D. D., S.-M. Kim, I. T. Todorov, and J. A. Huberman 1996. Large, complex modular structure of a fission yeast DNA replication origin. Curr. Biol. 6: 467–473.
   PubMedGoogle Scholar
• Dubey, D. D., J. Zhu, D. L. Carlson, K. Sharma, and J. A. Huberman 1994. Three ARS elements contribute to the ura4 replication origin region in the fission yeast, Schizosaccharomyces cerevisiae. EMBO J. 13: 3638–3647.
   PubMedGoogle Scholar
• Fournier, P., C. Gaillardin, L. de Louvencourt, H. Heslot, B. F. Lang, and F. Kaudewitz 1982. r-DNA plasmid from Schizosaccharomyces pombe: cloning and use in yeast transformation. Curr. Genet. 6: 31–38.
   PubMedGoogle Scholar
• Gietz, D., A. St. John, R. A. Woods, and R. H. Schiestl 1992. Improved method for high efficiency transformation of intact yeast cells. Nucleic Acids Res. 20: 1425.
   PubMed Web of Science ®Google Scholar
• Grallert, B., and P. Nurse 1996. The ORC1 homolog orp1 in fission yeast plays a key role in regulating onset of S phase. Genes Dev. 10: 2644–2654.
   PubMed Web of Science ®Google Scholar
• Grimm, C., J. Kohli, J. Murray, and K. Maundrell 1988. Genetic engineering of Schizosaccharomyces pombe: a system for gene disruption and replacement using the ura4 gene as a selectable marker. Mol. Gen. Genet. 215: 81–86.
   PubMedGoogle Scholar
• Henikoff, S. 1984. Unidirectional digestion with exonuclease III creates targeted breakpoints for DNA sequencing. Gene 28: 351–359.
   PubMed Web of Science ®Google Scholar
• Holmes, S. G., and M. M. Smith 1989. Interaction of the H4 autonomously replicating sequence core consensus sequence and its 3′-flanking domain. Mol. Cell. Biol. 9: 5464–5472.
   PubMedGoogle Scholar
• Hsiao, C.-L., and J. Carbon 1979. High-frequency transformation of yeast by plasmids containing the cloned yeast ARG4 gene. Proc. Natl. Acad. Sci. USA 76: 3829–3833.
   PubMedGoogle Scholar
• Huang, R.-Y., and D. Kowalski 1996. Multiple DNA elements in ARS305 determine replication origin activity in a yeast chromosome. Nucleic Acids Res. 24: 816–823.
   PubMedGoogle Scholar
• Kim, S.-M., and J. A. Huberman. Unpublished data.
   Google Scholar
• Kim, S.-M., and J. A. Huberman. Unpublished data.
   Google Scholar
• Lapeyre, B., and J. Feliu. 1993. GenBank accession no. Z19578.
   Google Scholar
• Lin, S., and D. Kowalski 1997. Functional equivalency and diversity of cis-acting elements among yeast replication origins. Mol. Cell. Biol. 17: 5473–5484.
   PubMedGoogle Scholar
• Liu, Z., A. Zhao, L. Chen, and L. Pape 1997. Activated levels of rRNA synthesis in fission yeast are driven by an intergenic rDNA region positioned over 2500 nucleotides upstream of the initiation site. Nucleic Acids Res. 25: 659–668.
   PubMedGoogle Scholar
• Maleszka, R., and G. D. Clark-Walker 1993. Yeasts have a four-fold variation in ribosomal DNA copy number. Yeast 9: 53–58.
   PubMed Web of Science ®Google Scholar
• Marahrens, Y., and B. Stillman 1992. A yeast chromosomal origin of DNA replication defined by multiple functional elements. Science 255: 817–823.
   PubMed Web of Science ®Google Scholar
• Matsumoto, K., and Y. Ishimi 1994. Single-stranded-DNA-binding protein-dependent DNA unwinding of the yeast ARS1 region. Mol. Cell. Biol. 14: 4624–4632.
   PubMedGoogle Scholar
• Maundrell, K., A. Hutchison, and S. Shall 1988. Sequence analysis of ARS elements in fission yeast. EMBO J. 7: 2203–2209.
   PubMedGoogle Scholar
• Maundrell, K., A. P. H. Wright, M. Piper, and S. Shall 1985. Evaluation of heterologous ARS activity in S. cerevisiae using cloned DNA from S. pombe. Nucleic Acids Res. 13: 3711–3722.
   PubMedGoogle Scholar
• Moreno, S., A. Klar, and P. Nurse 1991. Molecular genetic analysis of fission yeast Schizosaccharomyces pombe. Methods Enzymol. 194: 795–823.
   PubMed Web of Science ®Google Scholar
• Natale, D. A., A. E. Schubert, and D. Kowalski 1992. DNA helical stability accounts for mutational defects in a yeast replication origin. Proc. Natl. Acad. Sci. USA 89: 2654–2658.
   PubMedGoogle Scholar
• Natale, D. A., R. M. Umek, and D. Kowalski 1993. Ease of DNA unwinding is a conserved property of yeast replication origins. Nucleic Acids Res. 21: 555–560.
   PubMedGoogle Scholar
• Newlon, C. S. 1996. DNA replication in yeast DNA replication in eukaryotic cells. In: DePamphilis, M. L.873–914Cold Spring Harbor Laboratory Press, Plainview, N.Y.
   Google Scholar
• Rao, H., Y. Marahrens, and B. Stillman 1994. Functional conservation of multiple elements in yeast chromosomal replicators. Mol. Cell. Biol. 14: 7643–7651.
   PubMed Web of Science ®Google Scholar
• Rao, H., and B. Stillman 1995. The origin recognition complex interacts with a bipartite DNA binding site within yeast replicators. Proc. Natl. Acad. Sci. USA 92: 2224–2228.
   PubMed Web of Science ®Google Scholar
• Rowley, A., J. H. Cocker, J. Harwood, and J. F. X. Diffley 1995. Initiation complex assembly at budding yeast replication origins begins with the recognition of a bipartite sequence by limiting amounts of the initiator, ORC. EMBO J. 14: 2631–2641.
   PubMedGoogle Scholar
• Sakaguchi, J., and M. Yamamoto 1982. Cloned ura1 locus of Schizosaccharomyces pombe propagates autonomously in this yeast assuming a polymeric form. Proc. Natl. Acad. Sci. USA 79: 7819–7823.
   PubMedGoogle Scholar
• Sanchez, J. A., S.-M. Kim, and J. A. Huberman 1998. Ribosomal DNA replication in the fission yeast, Schizosaccharomyces pombe. Exp. Cell. Res. 238: 220–230.
   PubMedGoogle Scholar
• Schaak, J., J. Mao, and D. Soll 1982. The 5.8S RNA gene sequence and the ribosomal repeat of Schizosaccharomyces pombe. Nucleic Acids Res. 10: 2851–2864.
   PubMedGoogle Scholar
• Sikorski, R. S., and P. Hieter 1989. A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae. Genetics 122: 19–27.
   PubMed Web of Science ®Google Scholar
• Struhl, K., D. T. Stinchcomb, S. Scherer, and R. W. Davis 1979. High-frequency transformation of yeast: autonomous replication of hybrid DNA molecules. Proc. Natl. Acad. Sci. USA 76: 1035–1039.
   PubMed Web of Science ®Google Scholar
• Theis, J. F., and C. S. Newlon 1994. Domain B of ARS307 contains two functional elements and contributes to chromosomal replication origin function. Mol. Cell. Biol. 14: 7652–7659.
   PubMed Web of Science ®Google Scholar
• Toda, T., Y. Nakaseko, O. Niwa, and M. Yanagida 1984. Mapping of rRNA genes by integration of hybrid plasmids in Schizosaccharomyces pombe. Curr. Genet. 8: 93–97.
   PubMedGoogle Scholar
• Umek, R. M., and D. Kowalski 1988. The ease of DNA unwinding as a determinant of initiation at yeast replication origins. Cell 52: 559–567.
   PubMed Web of Science ®Google Scholar
• Walker, S. S., S. C. Francesconi, and S. Eisenberg 1990. A DNA replication enhancer in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 87: 4665–4669.
   PubMedGoogle Scholar
• Wohlgemuth, J. G., G. H. Bulboaca, M. Moghadam, M. S. Caddle, and M. P. Calos 1994. Physical mapping of origins of replication in the fission yeast Schizosaccharomyces pombe. Mol. Biol. Cell 5: 839–849.
   PubMedGoogle Scholar
• Wright, A. P. H., K. Maundrell, and S. Shall 1986. Transformation of Schizosaccharomyces pombe by non-homologous, unstable integration of plasmids in the genome. Curr. Genet. 10: 503–508.
   PubMedGoogle Scholar
• Zhao, Y., and H. B. Lieberman 1995. Schizosaccharomyces pombe: a model for molecular studies of eukaryotic genes. DNA Cell Biol. 14: 359–371.
   PubMed Web of Science ®Google Scholar
• Zhu, J., D. L. Carlson, D. D. Dubey, K. Sharma, and J. A. Huberman 1994. Comparison of the two major ARS elements of the ura4 replication origin region with other ARS elements in the fission yeast, Schizosaccharomyces pombe. Chromosoma 103: 414–422.
   PubMedGoogle Scholar