REFERENCES
- Aboussekhra, A., M. Biggerstaff, M. K. K. Shivji, J. A. Vilpo, V. Moncollin, V. N. Produst, M. Protić, U. Hübscher, J.-M. Egly, and J. Wood 1995. Mammalian DNA nucleotide excision repair reconstituted with purified protein components. Cell 80:859–868.
- Friedberg, E. C., G. C. Walker, W. Siede 1995. DNA repair and mutagenesis. American Society for Microbiology, Washington, D.C.
- Gao, S., R. Drouin, and J. Holmquist 1994. DNA repair rates mapped along the human PGK1 gene at nucleotide resolution. Science 263:1438–1440.
- Guzder, S. N., Y. Habraken, P. Sung, L. Prakash, and J. Prakash 1995. Reconstitution of yeast nucleotide excision repair with purified Rad proteins, replication protein A, and transcription factor TFIIH. J. Biol. Chem. 270:12973–12976.
- Guzder, S. N., P. Sung, L. Prakash, and J. Prakash 1997. Yeast Rad7-Rad16 complex, specific for the nucleotide excision repair of the nontranscribed DNA strand, is an ATP-dependent DNA damage sensor. J. Biol. Chem. 272:21665–21668.
- Guzder, S. N., P. Sung, L. Prakash, and J. Prakash 1998. The DNA-dependent ATPase activity of yeast nucleotide excision repair factor 4 and its role in DNA damage recognition. J. Biol. Chem. 273:6292–6296.
- Hanawalt, P. C. 1994. Transcription-coupled repair and human disease. Science 266:1957–1958.
- Kim, J.-K., and J. Choi 1995. The solution structure of DNA duplex-decamer containing the (6-4) photoproduct of thymidylyl(3′→5′)thymidine by NMR and relaxation matrix refinement. Eur. J. Biochem. 228:849–854.
- Kunala, S., and J. Brash 1992. Excision repair at individual bases of the Escherichia coli lacI gene: relation to mutation hot spots and transcription coupling activity. Proc. Natl. Acad. Sci. USA 89:11031–11035.
- Leadon, S. A., and J. Lawrence 1992. Strand-selective repair of DNA damage in the yeast GAL7 gene requires RNA polymerase II. J. Biol. Chem. 267:23175–23182.
- Losson, R., R. P. P. Fuchs, and J. Lacroute 1985. Yeast promoters URA1 and URA3. Examples of positive control. J. Mol. Biol. 185:65–81.
- Mann, D. B., D. L. Springer, and J. Smerdon 1997. DNA damage can alter the stability of nucleosomes: effects are dependent on damage type. Proc. Natl. Acad. Sci. USA 94:2215–2220.
- Mellon, I., and J. Hanawalt 1989. Selective removal of transcription-blocking DNA damage from the transcribed strand of the mammalian DHFR gene. Nature 342:95–98.
- Mellon, I. M., G. S. Spivak, and J. Hanawalt 1987. Selective removal of transcription-blocking DNA damage from the transcribed strand of the mammalian DHFR gene. Cell 51:241–249.
- Mu, D., C.-H. Park, T. Matsunaga, D. S. Hsu, J. T. Reardon, and J. Sancar 1995. Reconstitution of human DNA repair excision nuclease in a highly defined system. J. Biol. Chem. 270:2415–2418.
- Selby, C. P., and J. Sancar 1993. Molecular mechanism of transcription-repair coupling. Science 260:53–58.
- Smerdon, M. J., and J. Thoma 1990. Site-specific DNA repair at the nucleosome level in a yeast minichromosome. Cell 61:675–684.
- Sweder, K. S., and J. Hanawalt 1992. Preferential repair of cyclobutane pyrimidine dimers in the transcribed strand of a gene in yeast chromosomes and plasmids is dependent on transcription. Proc. Natl. Acad. Sci. USA 89:10696–10700.
- Tanaka, S., M. Livingstone-Zatchej, and J. Thoma 1996. Chromatin structure of the yeast URA3 gene at high resolution provides insight into structure and positioning of nucleosomes in the chromosomal context. J. Mol. Biol. 257:919–934.
- Taylor, J.-S., D. S. Garrett, and J. Cohrs 1988. Solution-state structure of the Dewar pyrimidinone photoproduct of thymidylyl-(3′-5′)-thymidine. Biochemistry 27:7206–7215.
- Teng, Y., S. Li, R. Waters, and J. Reed 1997. Excision repair at the level of the nucleotide in the Saccharomyces cerevisiae MFA2 gene: mapping of where enhanced repair in the transcribed strand begins or ends and identification of only a partial rad16 requisite for repairing upstream control sequences. J. Mol. Biol. 267:324–337.
- Tijsterman, M., J. Tasseron-de Jong, P. van de Putte, and J. Brouwer 1996. Transcription-coupled and global genome repair in the Saccharomyces cerevisiae RPB2 gene at nucleotide resolution. Nucleic Acids Res. 24:3499–3506.
- Tijsterman, M., R. A. Verhage, P. van de Putte, J. G. Tasseron-de Jong, and J. Brouwer 1997. Transitions in the coupling of transcription and nucleotide excision repair within RNA polymerase II-transcribed genes of Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 94:8027–8032.
- Tijsterman, M., E. E. A. Verhoeven, J. G. Tasseron-de Jong, and J. Brouwer 1998. Enzymatic detection of ultraviolet-induced pyrimidine (6-4) pyrimidone photoproducts at nucleotide resolution in Saccharomyces cerevisiae. Anal. Biochem. 260:110–113.
- Tornaletti, S., and J. Pfeifer 1994. Slow repair of pyrimidine dimers at p53 mutation hotspots in skin cancer. Science 263:1436–1438.
- van Hoffen, A., J. Venema, R. Meschini, A. A. van Zeeland, and J. Mullenders 1995. Transcription-coupled repair removes both cyclobutane pyrimidine dimers and 6-4 photoproducts with equal efficiency and in a sequential way from transcribed DNA in xeroderma pigmentosum group C fibroblasts. EMBO J. 14:360–367.
- Verhage, R., A.-M. Zeeman, N. de Groot, F. Gleig, D. D. Bang, P. van de Putte, and J. Brouwer 1994. The RAD7 and RAD16 genes, which are essential for pyrimidine dimer removal from the silent mating type loci, are also required for repair of the nontranscribed strand of an active gene in Saccharomyces cerevisiae. Mol. Cell. Biol. 14:6135–6142.
- Verhage, R. A., A. J. van Gool, N. de Groot, J. H. J. Hoeijmakers, P. van de Putte, and J. Brouwer 1996. Double mutants of Saccharomyces cerevisiae with alterations in global genome and transcription-coupled repair. Mol. Cell. Biol. 16:496–502.
- Vreeswijk, M. P., A. van Hoffen, B. E. Westland, H. Vrieling, A. A. van Zeeland, and J. Mullenders 1994. Analysis of repair of cyclobutane pyrimidine dimers and pyrimidine 6-4 pyrimidone photoproducts in transcriptionally active and inactive genes in Chinese hamster cells. J. Biol. Chem. 269:31858–31863.
- Wellinger, R. E., and J. Thoma 1997. Nucleosome structure and positioning modulate nucleotide excision repair in the non-transcribed strand of an active gene. EMBO J. 15:5046–5056.
- Yajima, H., M. Takao, S. Yasuhira, J. H. Zhao, C. Ishii, H. Inoue, and J. Yasui 1995. A eukaryotic gene encoding an endonuclease that specifically repairs DNA damage by ultraviolet light. EMBO J. 14:2393–2399.