44
Views
35
CrossRef citations to date
0
Altmetric
DNA Dynamics and Chromosome Structure

Integration of Bombyx mori R2 Sequences into the 28S Ribosomal RNA Genes of Drosophila melanogaster

, &
Pages 213-223 | Received 09 Aug 1999, Accepted 29 Sep 1999, Published online: 28 Mar 2023

REFERENCES

  • Bellaiche, Y., Mogila, V., and Perrimon, N.. 1999. I-SceI endonuclease, a new tool for studying DNA double-strand break repair mechanism in Drosophila. Genetics 152:1037–1044
  • Burke, W. D., Malik, H. S., Lathe, W. C., and Eickbush, T. H.. 1998. Are retrotransposons long term hitchhikers? Nature 239:141–142
  • Burke, W. D., Malik, H. S., Jones, J. P., and Eickbush, T. H.. 1999. The domain structure and retrotransposition mechanism of R2 elements are conserved throughout arthropods. Mol. Biol. Evol. 16:502–511
  • Burke, W. D., Müller, F., and Eickbush, T. H.. 1995. R4, a non-LTR retrotransposon specific to the large subunit rRNA gene of nematodes. Nucleic Acids Res. 23:4628–4634
  • Cousineau, B., Smith, D., Lawrence-Cavanagh, S., Mueller, J. E., Yang, J., Mills, D., Manias, D., Dunny, G., Lambowitz, A. M., and Belfort, M.. 1998. Retrohoming of a bacterial group II intron: mobility via complete reverse splicing, independent of homologous DNA recombination. Cell 94:451–462
  • Dhellin, O., Maestre, J., and Heidmann, T.. 1997. Functional differences between the human LINE retrotransposon and retroviral reverse transcriptases for in vivo mRNA reverse transcription. EMBO J. 16:6590–6602
  • Eickbush, D. G., and Eickbush, T. H.. 1995. Vertical transmission of the retrotransposable elements R1 and R2 during the evolution of the Drosophila melanogaster species subgroup. Genetics 139:671–684
  • Feng, Q., Moran, J. V., Kazazian, H. H., and Boeke, J. D.. 1996. Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition. Cell 87:905–916
  • Garza, D., Medhora, M., Koga, A., and Hartl, D. L.. 1991. Introduction of the transposable element mariner into the germline of Drosophila melanogaster. Genetics 128:303–310
  • George, J. A., Burke, W. D., and Eickbush, T. H.. 1996. Analysis of the 5′ junctions of R2 insertions with the 28S gene: implications for non-LTR retrotransposition. Genetics 142:853–863
  • George, J. A., and Eickbush, T. H.. 1999. Conserved features at the 5′ end of Drosophila R2 retrotransposable elements: implications for transcription and translation. Insect Mol. Biol. 8:3–10
  • Gloor, G. B., and Engels, W. R.. 1992. Single fly DNA preps for PCR. Drosophila Inform. Service 71:148–149
  • Haber, J. E.. 1995. In vivo biochemistry: physical monitoring of recombination induced by site-specific endonucleases. Bioessays 17:609–620
  • Hancock, J. M., Tautz, D., and Dover, G. A.. 1988. Evolution of the secondary structures and compensatory mutations of the ribosomal RNAs of Drosophila melanogaster. Mol. Biol. Evol. 5:393–414
  • Hazelrigg, T., Levis, R., and Rubin, G. M.. 1984. Transformation of white locus DNA in Drosophila: dosage compensation, zeste interaction, and position effects. Cell 36:469–481
  • Jakubczak, J. L., Xiong, Y., and Eickbush, T. H.. 1990. Type I (R1) and Type II (R2) ribosomal DNA insertions of Drosophila melanogaster are retrotransposable elements closely related to those of Bombyx mori. J. Mol. Biol. 212:37–52
  • Jakubczak, J. L., Zenni, M. K., Woodruff, R. C., and Eickbush, T. H.. 1992. Turnover of R1 (Type I) and R2 (Type II) retrotransposable elements in the ribosomal DNA of Drosophila melanogaster. Genetics 131:129–142
  • Jasin, M.. 1996. Genetic manipulation of genomes with rare-cutting endonucleases. Trends. Genet. 12:224–228
  • Jurka, J.. 1997. Sequence patterns indicate an enzymatic involvement in integration of mammalian retroposons. Proc. Natl. Acad. Sci. USA 94:1872–1877
  • Kazazian, H. H., and Moran, J. V.. 1998. The impact of L1 retrotransposition on the human genome. Nat. Genet. 19:19–24
  • Kidd, S. J., and Glover, D. M.. 1981. Drosophila melanogaster ribosomal DNA containing type II insertions is variably transcribed in different strains and tissues. J. Mol. Biol. 151:645–662
  • Lange, T. S., Ezrokhi, M., Borovjagin, A. V., Rivera-Leon, R., North, M. T., and Gerbi, S. A.. 1998. Nucleolar localization elements of Xenopus laevis U3 small nucleolar RNA. Mol. Biol. Cell 9:2973–2985
  • Lathe, W. C.III, and Eickbush, T. H.. 1997. A single lineage of R2 retrotransposable elements is an active, evolutionarily stable component of the Drosophila rDNA locus. Mol. Biol. Evol. 14:1232–1241
  • Loukeris, T. G., Livadaras, I., Arca, B., Zabalou, S., and Savakis, C.. 1995. Gene transfer into the medfly, Ceratitis capitata, with a Drosophila hydei transposable element. Science 270:2002–2005
  • Luan, D. D., and Eickbush, T. H.. 1995. RNA template requirements for target DNA-primed reverse transcription by the R2 retrotransposable element. Mol. Cell. Biol. 15:3882–3891
  • Luan, D. D., and Eickbush, T. H.. 1996. Downstream 28S gene sequences on the RNA template affect the choice of primer and the accuracy of initiation by the R2 reverse transcriptase. Mol. Cell. Biol. 16:4726–4734
  • Luan, D. D., Korman, M. H., Jakubczak, J. L., and Eickbush, T. H.. 1993. Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: a mechanism for non-LTR retrotransposition. Cell 72:595–605
  • McKnight, S. L., Miller, O. L.Jr.. 1976. Ultrastructural patterns of RNA synthesis during early embryogenesis of Drosophila melanogaster. Cell 8:305–319
  • Moran, J. V., Holmes, S. E., Naas, T. P., DeBerardinis, R. J., Boeke, J. D., and Kazazian, H. H.. 1996. High frequency retrotransposition in cultured mammalian cells. Cell 87:917–927
  • O'Brochta, D. A., Warren, W. D., Saville, K. J., and Atkinson, P. W.. 1996. Hermes, a functional non-drosophilid insect gene vector from Musca domestica. Genetics 142:907–914
  • Ramos, R. G. P., Grimwade, B. G., Wharton, K. A., Scottgale, T. N., and Artavanis-Tsakonis, S.. 1989. Physical and functional definition of the Drosophila Notch locus by P element transformation. Genetics 123:337–348
  • Rubin, G. M., and Spradling, A. C.. 1982. Genetic transformation of Drosophila with transposable element vectors. Science 218:348–353
  • Smit, A. F. A.. 1996. The origin of interspersed repeats in the human genome. Curr. Opin. Genet. Dev. 6:743–748
  • Spradling, A. C.. 1986. P element-mediated transformation Drosophila: a practical approach. Roberts, D. B. 175–197 IRL Press, Oxford, United Kingdom
  • Spradling, A. C., and Rubin, G. M.. 1982. Transposition of cloned P elements into Drosophila germ line chromosomes. Science 218:341–347
  • Tuteja, R., and Tuteja, N.. 1998. Nucleolin: a multifunctional major nucleolar phosphoprotein. Crit. Rev. Biochem. Mol. Biol. 33:407–436
  • Xiong, Y., and Eickbush, T. H.. 1988. Functional expression of a sequence-specific endonuclease encoded by the retrotransposon R2Bm. Cell 55:235–246
  • Xiong, Y., Burke, W. D., Jakubczak, J. L., and Eickbush, T. H.. 1988. Ribosomal DNA insertion elements R1Bm and R2Bm can transpose in a sequence specific manner to locations outside the 28S genes. Nucleic Acids Res. 16:10561–10573
  • Yang, J., and Eickbush, T. H.. 1998. RNA-induced changes in the activity of the endonuclease encoded by the R2 retrotransposable element. Mol. Cell. Biol. 18:3455–3465
  • Yang, J., Malik, H. S., and Eickbush, T. H.. 1999. Identification of the endonuclease domain encoded by R2 and other site-specific, non-long terminal repeat retrotransposable elements. Proc. Natl. Acad. Sci. USA 96:7847–7852
  • Zimmerly, S., Guo, H., Perlman, P. S., and Lambowitz, A. M.. 1995. Group II intron mobility occurs by target DNA-primed reverse transcription. Cell 82:545–554

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.