8
Views
23
CrossRef citations to date
0
Altmetric
Transcriptional Regulation

TATA-Binding Protein–TATA Interaction Is a Key Determinant of Differential Transcription of Silkworm Constitutive and Silk Gland-Specific tRNAAla Genes

, , &
Pages 1329-1343 | Received 11 Oct 1999, Accepted 23 Nov 1999, Published online: 28 Mar 2023

REFERENCES

  • Braun, B. R., Kassavetis, G. A., and Geiduschek, E. P.. 1992. Bending of the Saccharomyces cerevisiae 5S rRNA gene in transcription factor complexes. J. Biol. Chem. 267:22562–22569
  • Chaussivert, N., Conesa, C., Shaaban, S., and Sentenac, A.. 1995. Complex interactions between yeast TFIIIB and TFIIIC. J. Biol. Chem. 270:15353–15358
  • Colbert, T., Lee, S., Schimmack, G., and Hahn, S.. 1998. Architecture of protein and DNA contacts within the TFIIIB-DNA complex. Mol. Cell. Biol. 18:1682–1691
  • Dixon, W. J., Hayes, J. J., Levin, J. R., Weidner, M. F., Dombroski, B. A., and Tullius, T. D.. 1991. Hydroxyl radical footprinting. Methods Enzymol. 208:380–413
  • Garel, J. P., Mandel, P., Chavancy, G., and Daillie, J.. 1970. Functional adaptation of tRNAs to fibroin biosynthesis in the silkgland of Bombyx mori L. FEBS Lett. 7:327–329
  • Geiduschek, E. P., and Kassavetis, G. A.. 1992. RNA polymerase III transcription complexes Transcriptional regulation. McKnight, S. L., and Yamamoto, K. R. 247–280 Cold Spring Harbor Laboratory Press, Plainview, N.Y
  • Geiduschek, E. P., and Tocchini-Valentini, G. P.. 1988. Transcription by RNA polymerase III. Annu. Rev. Biochem. 57:873–914
  • Grove, A., Kassavetis, G. A., Johnson, T. E., and Geiduscheck, E. P.. 1999. The RNA polymerase III-recruiting factor TFIIIB induces a DNA bend between the TATA box and the transcriptional start site. J. Mol. Biol. 29:1429–1440
  • Hansen, S. K., Takada, S., Jacobson, R. H., Lis, J. T., and Tjian, R.. 1997. Transcription properties of a cell type-specific TATA-binding protein, TRF. Cell 91:71–83
  • Hernandez, N.. 1993. TBP, a universal eukaryotic transcription factor? Genes Dev. 7:1291–1308
  • Higuchi, R.. 1990. Recombinant PCR PCR protocols: a guide to methods and applications. Innis, M. A., Gelfand, D. H., Sninsky, J. J., and White, T. J. 177–188 Academic Press, San Diego, Calif
  • Hoopes, B. C., LeBlanc, J. F., and Hawley, D. K.. 1992. Kinetic analysis of yeast TFIID-TATA box complex formation suggests a multi-step pathway. J. Biol. Chem. 267:11539–11547
  • Joazeiro, C. A. P., Kassavetis, G. A., and Geiduschek, E. P.. 1996. Alternative outcomes in assembly of promoter complex: the roles of TBP and a flexible linker in placing TFIIIB on tRNA genes. Genes Dev. 10:725–739
  • Joazeiro, C. A. P., Kassavetis, G. A., and Geiduschek, E. P.. 1994. Identical components of yeast transcription factor IIIB are required and sufficient for transcription of TATA box-containing and TATA-less genes. Mol. Cell. Biol. 14:2798–2808
  • Juo, Z. S., Chiu, T. K., Leiberman, P. M., Baikalov, I., Berk, A. J., and Dickerson, R. E.. 1996. How proteins recognize the TATA box. J. Mol. Biol. 261:239–254
  • Kassavetis, G. A., Bardeleben, C., Kumar, A., Ramirez, E., and Geiduschek, E. P.. 1997. Domain of the Brf component of RNA polymerase III transcription factor IIIB (TFIIIB): functions in assembly of TFIIIB-DNA complexes and recruitment of RNA polymerase to the promoter. Mol. Cell. Biol. 17:5299–5306
  • Kassavetis, G. A., Bartholomew, B., Blanco, J. A., Johnson, T. E., and Geiduschek, E. P.. 1991. Two essential components of the Saccharomyces cerevisiae transcription factor TFIIIB: transcription and DNA-binding properties. Proc. Natl. Acad. Sci. USA 88:7308–7312
  • Kassavetis, G. A., Braun, B. R., Nguyen, L. H., and Geiduschek, E. P.. 1990. S. cerevisiae TFIIIB is the transcription initiation factor proper of RNA polymerase III, while TFIIIA and TFIIIC are assembly factors. Cell 60:235–245
  • Kassavetis, G. A., Nguyen, S. T., Kobayashi, R., Kumar, A., Geiduschek, E. P., and Pisano, M.. 1995. Cloning, expression, and function of TFC5, the gene encoding the B" component of the Saccharomyces cerevisiae RNA polymerase III transcription factor TFIIIB. Proc. Natl. Acad. Sci. USA 92:9786–9790
  • Kassavetis, G. A., Riggs, D. L., Negri, R., Nguyen, L. H., and Geiduschek, E. P.. 1989. Transcription factor IIIB generates extended DNA interactions in RNA polymerase III transcription complexes on tRNA genes. Mol. Cell. Biol. 9:2551–2566
  • Khoo, B., Brophy, B., and Jackson, S. P.. 1994. Conserved functional domains of the RNA polymerase III general transcription factor BRF. Genes Dev. 8:2879–2890
  • Koski, R. A., Allison, D. S., Worthington, M., and Hall, B. D.. 1982. An in vitro RNA polymerase III system from S. cerevisiae: effects of deletions and point mutations upon SUP4 gene transcription. Nucleic Acids Res. 10:8127–8143
  • Kumar, A., Grove, A., Kassavetis, G. A., and Geiduschek, E. P.. 1998. Transcription factor IIIB: the architecture of its DNA complex, and its roles in initiation of transcription by RNA polymerase III. Cold Spring Harbor Symp. Quant. Biol. 63:121–129
  • Kumar, A., Kassavetis, G. A., Geiduschek, E. P., Hambalko, M., and Brent, C. J.. 1997. Functional dissection of the B" component of RNA polymerase III transcription factor IIIB: a scaffolding protein with multiple roles in assembly and initiation of transcription. Mol. Cell. Biol. 17:1868–1880
  • Kurjan, J., Hall, B. D., Gillam, S., and Smith, M.. 1980. Mutations at the yeast SUP4 tRNATyr locus: DNA sequence changes in mutants lacking suppressor activity. Cell 20:701–709
  • Larson, D., Bradford-Wilcox, J., Young, L. S., and Sprague, K. U.. 1983. A short 5′ flanking region containing conserved sequences is required for silkworm alanine tRNA gene activity. Proc. Natl. Acad. Sci. USA 80:3416–3420
  • Léveillard, T., Kassavetis, G. A., and Geiduschek, E. P.. 1991. Saccharomyces cerevisiae transcription factors IIIB and IIIC bend the DNA of a tRNAGln gene. J. Biol. Chem. 266:5162–5168
  • Librizzi, M. D., Brenowitz, M., and Willis, I. M.. 1998. The TATA element and its context affect the cooperative interaction of TATA-binding protein with the TFIIB-related factor, TFIIIB70. J. Biol. Chem. 273:4563–4568
  • Lucas, F., Shaw, J. T. B., and Smith, S. G.. 1958. The silk fibroins. Adv. in Protein Chem. 13:107–242
  • Matsuzaki, K.. 1966. Fractionation of amino acid-specific s-RNA from silkgland by methylated albumin column chromatography. Biochem. Biophys. Acta 114:222–226
  • Meza, L., Araya, A., Leon, G., Krauskopf, M., Siddiqui, M. A. Q., and Garel, J. P.. 1977. Specific alanine tRNA species associated with fibroin biosynthesis in the posterior silk-gland of Bombyx mori L. FEBS Lett. 77:255–260
  • Mital, R., Kobayashi, R., and Hernandez, R.. 1996. RNA polymerase III transcription from the human U6 and adenovirus type 2 VAI promoters has different requirements for human BRF, a subunit of human TFIIIB. Mol. Cell. Biol. 16:7031–7042
  • Morton, D. G., and Sprague, K. U.. 1984. In vitro transcription of a silkworm 5S RNA gene requires an upstream signal. Proc. Natl. Acad. Sci. USA 81:5519–5522
  • Ottonello, S., Rivier, D. H., Doolittle, G. M., Young, L. S., and Sprague, K. U.. 1987. The properties of a new polymerase III transcription factor reveal that transcription complexes can assemble by more than one pathway. EMBO J. 6:1921–1927
  • Ouyang, C., and Sprague, K. U.. 1998. Cloning and characterization of the TATA-binding protein of the silkworm Bombyx mori. Gene 221:207–213
  • Palida, F. A., Hale, C., and Sprague, K. U.. 1993. Transcription of a silkworm tRNACAla gene is directed by two AT-rich upstream sequence elements. Nucleic Acids Res. 21:5875–5881
  • Rabenstein, M. D., Zhou, S., Lis, J. T., and Tjian, R.. 1999. TATA box-binding protein (TBP)-related factor 2 (TRF2), a third member of the TBP family. Proc. Natl. Acad. Sci. USA 96:4791–4796
  • Roberts, S., Miller, S. J., Lane, W. S., Lee, S., and Hahn, S.. 1996. Cloning and functional characterization of the gene encoding the TFIIIB90 subunit of RNA polymerase III transcription factor TFIIIB. J. Biol. Chem. 271:14903–14909
  • Sambrook, J., Fritsch, E. F., and Maniatis, T.. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y
  • Schultz, M. C., Reeder, R. H., and Hahn, S.. 1989. 1992. Variants of the TATA-binding protein can distinguish subsets of RNA polymerase I, II, and III promoters. Cell 69:697–702
  • Sharp, P. A.. 1992. TATA-binding protein is a classless factor. Cell 68:819–821
  • Sprague, K. U.. 1975. The Bombyx mori silk proteins: characterization of large polypeptides. Biochemistry 14:925–931
  • Sprague, K. U.. 1995. Transcription of eukaryotic tRNA genes tRNA: structure, biosynthesis, and function. Söll, D., and RajBhandary, U. L. 31–50 ASM Press, Washington, D.C.
  • Sprague, K. U., Hagenbüchle, O., and Zuniga, M. C.. 1977. The nucleotide sequence of two silk gland alanine tRNAs: implications for fibroin synthesis and for initiator tRNA structure. Cell 11:561–570
  • Starr, D. B., Hoopes, B. C., and Hawley, D. K.. 1995. DNA bending is an important component of site-specific recognition by the TATA binding protein. J. Mol. Biol. 250:434–446
  • Struhl, K.. 1994. Duality of TBP, the universal transcription factor. Science 263:1103–1104
  • Sullivan, H. S., Young, L. S., White, C. N., and Sprague, K. U.. 1994. Silk gland-specific tRNAAla genes interact more weakly than constitutive tRNAAla genes with silkworm TFIIIB and polymerase III fractions. Mol. Cell. Biol. 14:1806–1814
  • Trivedi, A., Vilalta, A., Gopalan, S., and Johnson, D. L.. 1996. TATA-binding protein is limiting for both TATA-containing and TATA-lacking RNA polymerase III promoters in Drosophila cells. Mol. Cell. Biol. 16:6909–6916
  • Trivedi, A., Young, L. S., Ouyang, C., Johnson, D. L., and Sprague, K. U.. 1999. A TATA element is required for tRNA promoter activity and confers TATA-binding protein responsiveness in Drosophila Schneider-2 cells. J. Biol. Chem. 274:11369–11375
  • Vilalta, A., Trivedi, A., Wang, Z., Roeder, R. G., and Johnson, D. L.. 1997. An RNA polymerase III-defective mutation in TATA-binding protein disrupts its interaction with a transcription factor IIIB subunit in Drosophila cells. J. Biol. Chem. 272:18087–18092
  • Voelker, R., and Barkan, A.. 1995. Two nuclear mutations disrupt distinct pathways for targeting proteins to the chloroplast thylakoid. EMBO J. 14:3905–3914
  • Wang, Y., Jensen, R. C., and Stumph, W. E.. 1996. Role of TATA box sequence and orientation in determining RNA polymerase II/III transcription specificity. Nucleic Acids Res. 24:3100–3106
  • Wang, Z., and Roeder, R. G.. 1995. Structure and function of a human transcription factor TFIIIB subunit that is evolutionarily conserved and contains both TFIIB- and high-mobility-group protein 2-related domains. Proc. Natl. Acad. Sci. USA 92:7026–7030
  • White, R. J.. RNA polymerase III transcription, 2nd ed. R. G. Landes Co., Austin, Tex
  • Whitehall, S. K., Kassavetis, G. A., and Geiduschek, E. P.. 1998. 1995. The symmetry of the yeast U6 RNA gene's TATA box and the orientation of the TATA-binding protein in yeast TFIIIB. Genes Dev. 9:2974–2985
  • Wilson, E. T., Larson, D., Young, L. S., and Sprague, K. U.. 1985. A large region controls tRNA transcription. J. Mol. Biol. 183:153–163
  • Wobbe, C. R., and Struhl, K.. 1990. Yeast and human TATA-binding proteins have nearly identical DNA sequence requirements for transcription in vitro. Mol. Cell. Biol. 10:3859–3867
  • Wong, J. M., and Bateman, E.. 1994. TBP-DNA interactions in the minor groove discriminate between A:T and T:A base pairs. Nucleic Acids Res. 22:1890–1896
  • Young, L. S., Ahnert, N., and Sprague, K. U.. 1996. Silkworm TFIIIB binds both constitutive and silk gland-specific tRNAAla promoters but protects only the constitutive promoter from DNase I cleavage. Mol. Cell. Biol. 16:1256–1266
  • Young, L. S., Takahashi, N., and Sprague, K. U.. 1986. Upstream sequences confer distinctive transcriptional properties on genes encoding silkgland-specific tRNAAla. Proc. Natl. Acad. Sci. USA 83:374–378

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.