Ribin, a Protein Encoded by a Message Complementary to rRNA, Modulates Ribosomal Transcription and Cell Proliferation

REFERENCES

• Abath, F., and A. Simpson. 1990. A simple method for the recovery of purified recombinant peptides cleaved from glutathione-S-transferase fusion proteins. Peptide Res. 3:167–168.
   PubMedGoogle Scholar
• Agapov, E., I. Frolov, B. Lindenbach, B. Pragai, S. Schlesinger, and C. Rice. 1998. Noncytopathic Sindbis virus RNA vectors for heterologous gene expression. Proc. Natl. Acad. Sci. USA 95:12989–12994.
   PubMed Web of Science ®Google Scholar
• Ausubel, F., R. Brent, R. Kingston, D. Moore, J. Seidman, J. Smith, and K. Struhl. 1992. Current protocols in molecular biology. John Wiley & Sons, New York, N.Y
   Google Scholar
• Bachellerie, J.-P., B. Michot, M. Nicoloso, A. Balakin, J. Ni, and M. Fournier. 1995. Antisense snoRNAs: a family of nucleolar RNAs with long complementarities to RNA. Trends Biochem. Sci. 20:261–264.
   PubMedGoogle Scholar
• Beckmann, H., J.-L. Chen, T. O'Brien, and R. Tjian. 1995. Coactivator and promoter-selective properties of RNA polymerase I TAFs. Science 270:1506–1509.
   PubMedGoogle Scholar
• Bell, S., H.-M. Jantzen, and R. Tjian. 1990. Assembly of alternative multiprotein complexes directs rRNA promoter selectivity. Genes Dev. 4:943–954.
   PubMedGoogle Scholar
• Berg, K., C. L. Squires, and C. Squires. 1987. In vivo translation of a region within the rrn 16S rRNA gene of Escherichia coli.. J. Bacteriol. 169:1691–1701.
   PubMedGoogle Scholar
• Bodem, J., G. Dobreva, U. Hoffmann-Rohrer, S. Iben, H. Zentgraf, H. Delius, M. Vingron, and I. Grummt. 2000. TIF-IA, the factor mediating growth-dependent control of ribosomal RNA synthesis, is the mammalian homolog of yeast Rrn3p. EMBO Rep. 1:171–175.
   PubMed Web of Science ®Google Scholar
• Brun, R., K. Rayan, and B. Sollner-Web. 1994. Factor C*, the specific initiation component of the mouse RNA polymerase I holoenzyme, is inactivated early in the transcription process. Mol. Cell. Biol. 14:5010–5021.
   PubMedGoogle Scholar
• Budde, A., and I. Grummt. 1999. p53 represses ribosomal gene transcription. Oncogene 18:1119–1124.
   PubMedGoogle Scholar
• Clark, C. G.. 1987. On the evolution of ribosomal RNA. J. Mol. Evol. 25:343–350.
   PubMedGoogle Scholar
• Dignam, J., R. Lebovitz, and R. Roeder. 1983. Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei. Nucleic Acids Res. 11:1475–1489.
   PubMed Web of Science ®Google Scholar
• Gerbi, S.. 1996. Expansion segments of ribosomal RNA. Ribosomal RNA: structure, evolution, processing and function in protein biosynthesis.. R. Zimmermann, and A. Dahlberg. 71–87. CRC Press, Boca Raton, Fla
   Google Scholar
• Gorski, J., I. Gonzalez, and R. Schmickel. 1987. The secondary structure of human 28S rRNA: the structure and evolution of a mosaic rRNA gene. J. Mol. Evol. 24:236–251.
   PubMed Web of Science ®Google Scholar
• Grummt, I.. 1999. Regulation of mammalian ribosomal gene transcription by RNA polymerase I. Prog. Nucleic Acid Res. Mol. Biol. 62:109–153.
   PubMedGoogle Scholar
• Hannan, K., B. Kennedy, A. Cavanaugh, R. Hannan, I. Hirschler-Laszkiewicz, L. Jefferson, and L. Rothblum. 2000. RNA polymerase transcription in confluent cells: Rb downregulates rDNA transcription during confluence-induced cell-cycle arrest. Oncogene 19:3487–3497.
   PubMedGoogle Scholar
• Hannan, R., V. Stefanovsky, T. Arino, L. Rothblum, and T. Moss. 1999. Cellular regulation of ribosomal DNA transcription: both rat and Xenopus UBF1 stimulate rDNA transcription in 3T3 fibroblasts. Nucleic Acids Res. 27:1205–1213.
   PubMedGoogle Scholar
• Hassouna, N., B. Michot, and J.-P. Bachellerie. 1984. The complete nucleotide sequence of mouse 28S rRNA gene. Implications for the process of size increase of the large subunit rRNA in higher eukaryotes. Nucleic Acids Res. 12:3563–3583.
   PubMed Web of Science ®Google Scholar
• Hauber, J., M. Malim, and B. Cullen. 1989. Mutational analysis of the conserved basic domain of human immunodeficiency virus Tat protein. J. Virol. 63:1181–1187.
   PubMed Web of Science ®Google Scholar
• Heix, J., A. Vente, R. Voit, A. Budde, T. Michaelidis, and I. Grummt. 1998. Mitotic silencing of human rRNA synthesis: inactivation of the promoter selectivity factor SL1 by cdc2/cyclin B-mediated phosphorylation. EMBO J. 17:7373–7381.
   PubMed Web of Science ®Google Scholar
• Jansson, A., F. Gillin, U. Kagardt, and P. Hagblom. 1994. Coding of hemolysins within the ribosomal RNA repeat on a plasmid in Entamoeba histolytica. Science 263:1440–1443.
   PubMedGoogle Scholar
• Kato, H., M. Nagamine, R. Kominami, and M. Muramatsu. 1986. Formation of the transcription initiation complex on mammalian rDNA. Mol. Cell. Biol. 6:3418–3427.
   PubMedGoogle Scholar
• Kermekchiev, M., and M. Muramatsu. 1993. Presence of an inhibitor of RNA polymerase I mediated transcription in extracts from growth arrested mouse cells. Nucleic Acids Res. 21:447–453.
   PubMedGoogle Scholar
• Klein, J., and I. Grummt. 1999. Cell cycle-dependent regulation of RNA polymerase I transcription: The nucleolar transcription factor UBF is inactive in mitosis and early G1. Proc. Natl. Acad. Sci. USA 96:6096–6101.
   PubMed Web of Science ®Google Scholar
• Landshulz, W., P. Johnson, E. Adashi, B. Graves, and S. McKnight. 1988. Isolation of a recombinant copy of the gene encoding C/EBP. Genes Dev. 2:786–800.
   PubMedGoogle Scholar
• Manley, J., A. Fire, A. Cano, P. Sharp, and M. Gefter. 1980. DNA-dependent transcription of adenovirus genes in a soluble whole-cell extract. Proc. Natl. Acad. Sci. USA 77:3855–3859.
   PubMed Web of Science ®Google Scholar
• Mauro, V., and G. Edelman. 1997. rRNA-like sequences occur in diverse primary transcripts: implication for the control of gene expression. Proc. Natl. Acad. Sci. USA 94:422–427.
   PubMedGoogle Scholar
• Michot, B., and J.-P. Bachellerie. 1987. Comparisons of large subunit rRNAs reveal some eukaryote-specific elements of secondary structure. Biochemie 69:11–23.
   PubMedGoogle Scholar
• Munro, J., R. Burdon, and D. Leader. 1986. Characterization of a human orphan 28S ribosomal DNA. Gene 48:65–70.
   PubMedGoogle Scholar
• Nagamine, M., T. Kishimoto, J. Aono, H. Kato, R. Kominami, and M. Muramatsu. 1987. Sequestration analysis for RNA polymerase I transcription factors with various deletion and point mutations reveals different functional regions of the mouse rRNA gene promoter. Mol. Cell. Biol. 7:1486–1495.
   PubMedGoogle Scholar
• O'Mahony, D., D. Smith, W. Xie, and L. Rothblum. 1992. Analysis of the phosphorylation, DNA-binding and dimerization properties of the RNA polymerase I transcription factors UBF1 and UBF2. Nucleic Acids Res. 20:1301–1308.
   PubMedGoogle Scholar
• Paule, M. R., and R. J. White. 2000. Survey and summary: transcription by RNA polymerase I and III. Nucleic Acids Res. 28:1283–1298.
   PubMed Web of Science ®Google Scholar
• Perrone-Bizzozero, N, S. Lapalucci-Espinoza, E. Medrano, and M. Franze-Fernandez. 1985. Transcription of rRNA is differentially controlled in resting and growing BALB/c 3T3 cells. J. Cell. Physiol. 124:160–164.
   PubMedGoogle Scholar
• Reeder, R.. 1999. Regulation of RNA polymerase I transcription in yeast and vertebrates. Prog. Nucleic Acid Res. Mol. Biol. 62:293–328.
   PubMed Web of Science ®Google Scholar
• Rosen, C.. 1991. Regulation of HIV gene expression by RNA-protein interaction. Trends Genet. 7:9–13.
   PubMedGoogle Scholar
• Rothblum, L., R. Reddy, and B. Cassidy. 1982. Transcription initiation site of rat ribosomal DNA. Nucleic Acids Res. 10:7345–7356.
   PubMedGoogle Scholar
• Rudloff, U., D. Eberhard, L. Tora, H. Stunnenberg, and I. Grummt. 1994. TBP-associated factors interact with DNA and govern species specificity of RNA polymerase I transcription. EMBO J. 13:2611–2616.
   PubMedGoogle Scholar
• Sambrook, J., E. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y
   Google Scholar
• Schnapp, A., C. Pfleiderer, H. Rosenbauer, and I. Grummt. 1990. A growth-dependent transcription initiation factor (TIF-IA) interacting with RNA polymerase I regulates mouse ribosomal RNA synthesis. EMBO J. 9:2857–2863.
   PubMedGoogle Scholar
• Singh, H., J. LeBowitz, A. Baldwin, and P. Sharp. 1988. Molecular cloning of an enhancer binding protein: isolation by screening of an expression library with a recognition site DNA. Cell 52:415–423.
   PubMedGoogle Scholar
• Sirri, V., P. Roussel, and D. Hernandez-Verdun. 1999. The mitotically phosphorylated form of the transcription termination factor TTF-1 is associated with the repressed rDNA transcription. J. Cell Sci. 112:3259–3268.
   PubMed Web of Science ®Google Scholar
• Tenson, T., A. De Blasio, and A. Mankin. 1996. A functional peptide encoded in the E. coli 23S rRNA. Proc. Natl. Acad. Sci. USA 93:5641–5646.
   PubMed Web of Science ®Google Scholar
• Upcroft, J., A. Healey, R. Mitchell, P. Boreham, and P. Upcroft. 1990. Antigen expression from the ribosomal DNA repeat unit of Giardia intestinalis. Nucleic Acids Res. 18:7077–7081.
   PubMedGoogle Scholar
• Voit, R., M. Hoffman, and I. Grummt. 1999. Phosphorylation by G1-specific cdk-cyclin complexes activates the nucleolar transcription factor UBF. EMBO J. 18:1891–1899.
   PubMed Web of Science ®Google Scholar
• Wang, S., I. Pritle, and R. Pritle. 1997. A human 28S ribosomal RNA retropseudogene. Gene 196:105–111.
   PubMedGoogle Scholar
• Xie, W., and L. Rothblum. 1992. Domains of the rat rDNA promoter must be aligned stereospecifically. Mol. Cell. Biol. 12:1266–1275.
   PubMedGoogle Scholar
• Yamamoto, K., A. Koga, M. Yamamoto, Y. Nishi, T. Tamura, Y. Nogi, and M. Muramatsu. 2000. Identification of a novel 70 kDa protein that binds to the core promoter element and is essential for ribosomal DNA transcription. Nucleic Acids Res. 28:1199–1205.
   PubMedGoogle Scholar
• Zhai, W., and L. Comai. 2000. Repression of RNA polymerase I transcription by the tumor suppressor p53. Mol. Cell. Biol. 20:5930–5938.
   PubMed Web of Science ®Google Scholar
• Zhai, W., A. Tuan, and L. Comai. 1997. SV40 large T antigen binds to the TBP-TAF(I) complex SLI and coactivates ribosomal RNA transcription. Genes Dev. 11:1605–1617.
   PubMedGoogle Scholar