Accurate Transcription of a Plant Mitochondrial Gene In Vitro

REFERENCES

• Biswas, T. K., B. Ticho, and G. S. Getz. 1987. In vitro characterization of the yeast mitochondrial promoter using single-base substitution mutants. J. Biol. Chem. 262:13690–13696.
   PubMedGoogle Scholar
• Biswas, T. K., and G. S. Getz. 1986. Nucleotides flanking the promoter sequence influence the transcription of the yeast mitochondrial gene coding for ATPase subunit 9. Proc. Natl. Acad. Sci. USA 83:270–274.
   PubMedGoogle Scholar
• Biswas, T. K., and G. S. Getz. 1988. Promoter-promoter interactions influencing transcription of the yeast mitochondrial gene, Oli 1, coding for ATPase subunit 9. Cis and trans effects. J. Biol. Chem. 263:4844–4851.
   PubMedGoogle Scholar
• Bogenhagen, D. F., E. F. Applegate, and B. K. Yoza. 1984. Identification of a promoter for transcription of the heavy strand of human mtDNA: in vitro transcription and deletion mutagenesis. Cell 36:1105–1113.
   PubMedGoogle Scholar
• Bogenhagen, D. F., and B. K. Yoza. 1986. Accurate in vitro transcription of Xenopus laevis mitochondrial DNA from two bidirectional promoters. Mol. Cell. Biol. 6:2543–2550.
   PubMedGoogle Scholar
• Bonen, L. Unpublished data.
   Google Scholar
• Bonen, L., P. H. Boer, and M. W. Gray. 1984. The wheat cytochrome oxidase subunit II gene has an intron insert and three radical amino acid changes relative to maize. EMBO J. 3:2531–2536.
   PubMed Web of Science ®Google Scholar
• Chang, D. D., and D. A. Clayton. 1984. Precise identification of individual promoters for transcription of each strand of human mitochondrial DNA. Cell 36:635–643.
   PubMed Web of Science ®Google Scholar
• Chang, D. D., and D. A. Clayton. 1986. Precise assignment of the light-strand promoter of mouse mitochondrial DNA: a functional promoter consists of multiple upstream domains. Mol. Cell. Biol. 6:3253–3261.
   PubMedGoogle Scholar
• Chang, D. D., and D. A. Clayton. 1986. Precise assignment of the heavy-strand promoter of mouse mitochondrial DNA: cognate start sites are not required for transcriptional initiation. Mol. Cell. Biol. 6:3262–3267.
   PubMed Web of Science ®Google Scholar
• Chang, D. D., R. P. Fisher, and D. A. Clayton. 1987. Roles for a promoter and RNA processing in the synthesis of mitochondrial displacement-loop strands. Biochim. Biophys. Acta 909:85–91.
   PubMedGoogle Scholar
• Chang, D. D., J. E. Hixson, and D. A. Clayton. 1986. Minor transcription initiation events indicate that both human mitochondrial promoters function bidirectionally. Mol. Cell. Biol. 6:294–301.
   PubMedGoogle Scholar
• Chestukhin, A. V., Z. P. Karyakina, and M. F. Shemyakin. 1986. Isolation and properties of DNA-dependent RNA polymerase from wheat germ mitochondria. Mol. Biol. 19:1250-1257. [Translated from Mol. Biol. 19:1537-1545, 1985.]
   Google Scholar
• Covello, P. S., and M. W. Gray. 1989. RNA editing in plant mitochondria. Nature (London) 341:662–666.
   PubMedGoogle Scholar
• CovelIo, P. S., and M. W. Gray. Submitted for publication.
   Google Scholar
• Donis-Keller, H., A. M. Maxam, and W. Gilbert. 1977. Mapping adenines, guanines, and pyrimidines in RNA. Nucleic Acids Res. 4:2527–2538.
   PubMedGoogle Scholar
• Edwards, J. C., D. Levens, and M. Rabinowitz. 1982. Analysis of transcriptional initiation of yeast mitochondrial DNA in a homologous in vitro transcription system. Cell 31:337–346.
   PubMedGoogle Scholar
• Fisher, R. P., and D. A. Clayton. 1985. A transcription factor required for promoter recognition by human mitochondrial RNA polymerase. Accurate initiation at the heavy- and lightstrand promoters dissected and reconstituted in vitro. J. Biol. Chem. 260:11330–11338.
   PubMed Web of Science ®Google Scholar
• Fisher, R. P., M. A. Parisi, and D. A. Clayton. 1989. Flexible recognition of rapidly evolving promoter sequences by mitochondrial transcription factor 1. Genes Dev. 3:2202–2217.
   PubMedGoogle Scholar
• Fisher, R. P., J. N. Topper, and D. A. Clayton. 1987. Promoter selection in human mitochondria involves binding of a transcription factor to orientation-independent upstream regulatory elements. Cell 50:247–258.
   PubMed Web of Science ®Google Scholar
• Gray, M. W. 1989. Origin and evolution of mitochondrial DNA. Annu. Rev. Cell Biol. 5:25–50.
   PubMedGoogle Scholar
• Gray, M. W. 1990. The mitochondrial genome and its expression, p. 147-159. In D. T. Dennis and D. H. Turpin (ed.), Plant physiology, biochemistry and molecular biology. Longman, Harlow, U.K.
   Google Scholar
• Gray, M. W., and D. A. Clayton. 1986. Characterization of a mouse mitochondrial transcription system. UCLA Symp. Mol. Cell. Biol. New Ser. 52:395–404.
   Google Scholar
• Hanic-Joyce, P. J., and M. W. Gray. 1990. Processing of transfer RNA precursors in a wheat mitochondrial extract. J. Biol. Chem. 265:13782–13791.
   PubMedGoogle Scholar
• Hixson, J. E., and D. A. Clayton. 1985. Initiation of transcription from each of the two human mitochondrial promoters requires unique nucleotides at the transcriptional start site. Proc. Natl. Acad. Sci. USA 82:2660–2664.
   PubMedGoogle Scholar
• Kennell, J. C., and A. M. Lambowitz. 1989. Development of an in vitro transcription system for Neurospora crassa mitochondrial DNA and identification of transcription initiation sites. Mol. Cell. Biol. 9:3603–3613.
   PubMed Web of Science ®Google Scholar
• L’Abbé, D., B. F. Lang, P. Desjardins, and R. Morais. 1990. Histidine tRNA from chicken mitochondria has an uncoded 5′-terminal guanylate residue. J. Biol. Chem. 265:2988–2992.
   PubMed Web of Science ®Google Scholar
• Lonsdale, D. M. 1989. The plant mitochondrial genome, p. 229-295. In A. Marcus (ed.), The biochemistry of plants, vol. 15. Academic Press, New York, N.Y.
   Google Scholar
• Mulligan, R. M., G. T. Lau, and V. Walbot. 1988. Numerous transcription initiation sites exist for the maize mitochondrial genes for subunit 9 of the ATP synthase and subunit 3 of cytochrome oxidase. Proc. Natl. Acad. Sci. USA 85:7998–8002.
   PubMed Web of Science ®Google Scholar
• Mulligan, R. M., A. P. Maloney, and V. Walbot. 1988. RNA processing and multiple transcription initiation sites result in transcript size heterogeneity in maize mitochondria. Mol. Gen. Genet. 211:373–380.
   PubMedGoogle Scholar
• Osinga, K. A., E. De Vries, G. T. J. Van der Horst, and H. F. Tabak. 1984. Initiation of transcription in yeast mitochondria: analysis of origins of replication and of genes coding for a messenger RNA and a transfer RNA. Nucleic Acids Res. 12:1889–1900.
   PubMedGoogle Scholar
• Peattie, D. A. 1979. Direct chemical method for sequencing RNA. Proc. Natl. Acad. Sci. USA 76:1760–1764.
   PubMed Web of Science ®Google Scholar
• Schinkel, A. H., M. J. A. Groot Koerkamp, M. H. Stuiver, G. T. J. Van der Horst, and H. F. Tabak. 1987. Effect of point mutations on in vitro transcription from the promoter for the large ribosomal RNA gene of yeast mitochondria. Nucleic Acids Res. 15:5597–5612.
   PubMedGoogle Scholar
• Schinkel, A. H., M. J. A. Groot Koerkamp, and H. F. Tabak. 1988. Mitochondrial RNA polymerase of Saccharomyces cerevisiae: composition and mechanism of promoter recognition. EMBO J. 7:3255–3262.
   PubMedGoogle Scholar
• Schinkel, A. H., M. J. A. Groot Koerkamp, E. P. W. Touw, and H. F. Tabak. 1987. Specificity factor of yeast mitochondrial RNA polymerase. Purification and interaction with core RNA polymerase. J. Biol. Chem. 262:12785–12791.
   PubMedGoogle Scholar
• Schinkel, A. H., M. J. A. Groot Koerkamp, G. T. J. Van der Horst, E. P. W. Touw, K. A. Osinga, A. M. Van der Bliek, G. H. Veeneman, J. H. Van Boom, and H. F. Tabak. 1986. Characterization of the promoter of the large ribosomal RNA gene in yeast mitochondria and separation of mitochondrial RNA polymerase into two different functional components. EMBO J. 5:1041–1047.
   PubMedGoogle Scholar
• Schinkel, A. H., and H. F. Tabak. 1989. Mitochondrial RNA polymerase: dual role in transcription and replication. Trends Genet. 5:149–154.
   PubMedGoogle Scholar
• Sederoff, R. R. 1984. Structural variation in mitochondrial DNA. Adv. Genet. 22:1–108.
   PubMedGoogle Scholar
• Shuey, D. J., and G. Attardi. 1985. Characterization of an RNA polymerase activity from HeLa cell mitochondria, which initiates transcription at the heavy strand rRNA promoter and the light strand promoter in human mitochondrial DNA. J. Biol. Chem. 260:1952–1958.
   PubMedGoogle Scholar
• Topper, J. N., and D. A. Clayton. 1989. Identification of transcriptional regulatory elements in human mitochondrial DNA by linker substitution analysis. Mol. Cell. Biol. 9:1200–1211.
   PubMedGoogle Scholar
• Tzagoloff, A., and A. M. Myers. 1986. Genetics of mitochondrial biogenesis. Annu. Rev. Biochem. 55:249–285.
   PubMed Web of Science ®Google Scholar
• Walberg, M. W., and D. A. Clayton. 1983. In vitro transcription of human mitochondrial DNA. Identification of specific light strand transcripts from the displacement loop region. J. Biol. Chem. 258:1268–1275.
   PubMedGoogle Scholar
• Ward, B. L., R. S. Anderson, and A. J. Bendich. 1981. The mitochondrial genome is large and variable in a family of plants (Cucurbitaceae). Cell 25:793–803.
   PubMed Web of Science ®Google Scholar
• Wettstein-Edwards, J., B. S. Ticho, N. C. Martin, D. Najarian, and G. S. Getz. 1986. In vitro transcription and promoter strength analysis of five mitochondrial tRNA promoters in yeast. J. Biol. Chem. 261:2905–2911.
   PubMedGoogle Scholar
• Yanisch-Perron, C., J. Vieira, and J. Messing. 1985. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mpl8 and pUC19 vectors. Gene 33:103–119.
   PubMedGoogle Scholar