Organization of Replication of Ribosomal DNA in Saccharomyces cerevisiae

Literature Cited

• Bayev, A. A., O. I. Georgiev, A. A. Hadjiolov, M. B. Kermekchiev, N. Nikolaev, K. G. Skryabin, and V. M. Zakharyev. 1980. The structure of the yeast ribosomal RNA genes. 2. The nucleotide sequence of the initiation site for ribosomal RNA transcription. Nucleic Acids Res. 8:4919-4926.
   PubMedGoogle Scholar
• Bayev, A. A., O. I. Georgiev, A. A. Hadjiolov, N. Nikolaev, K. G. Skryabin, and V. M. Zakharyev. 1981. The structure of the yeast ribosomal RNA genes. 3. Precise mapping of the 18S and 25S rRNA genes and structure of the adjacent regions. Nucleic Acids Res. 9:789-799.
   PubMed Web of Science ®Google Scholar
• Bell, G. L., L. J. DeGennaro, D. H. Gelfand, R. J. Bishop, P. Valenzuela, and W. J. Rutter. 1977. Ribosomal RNA genes of Saccharomyces cerevisiae. I. Physical map of the repeating unit and location of the regions coding for 5S, 5.8S, 18S, and 25S ribosomal RNAs. J. Biol. Chem. 252:8118-8125.
   PubMed Web of Science ®Google Scholar
• Bonven, B. J., E. Goeke, and O. Westergaard. 1985. A high affinity topoisomerase I binding sequence is clustered at DNase I hypersensitive sites in Tetrahymena R-chromatin. Cell 41:541-551.
   PubMed Web of Science ®Google Scholar
• Brewer, B. J. 1988. When polymerases collide: replication and the transcriptional organization of the E. coli chromosome. Cell 53:679-686.
   PubMed Web of Science ®Google Scholar
• Brewer, B. J., and W. L. Fangman. 1987. The localization of replication origins on ARS plasmids in 5. cerevisiae. Cell 51:463-471.
   PubMed Web of Science ®Google Scholar
• Broach, J. R., Y.-Y. Li, J. Feldman, M. Jayaram, J. Abraham, K. A. Nasmyth, and J. B. Hicks. 1982. Localization and sequence analysis of yeast origins of DNA replication. Cold Spring Harbor Symp. Quant. Biol. 47:1165-1173.
   Google Scholar
• Campbell, J. L. 1986. Eukaryotic DNA replication. Annu. Rev. Biochem. 51:733-771.
   Google Scholar
• Feinberg, A. P., and B. Vogelstein. 1983. A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity. Anal. Biochem. 132:6-13.
   PubMed Web of Science ®Google Scholar
• Georgiev, O. I., N. Nikolaev, and A. A. Hadjiolov. 1981. The structure of the yeast ribosomal RNA genes. 4. Complete sequence of the 25S rRNA gene from Saccharomyces cerevisiae. Nucleic Acids Res. 9:6953-6958.
   PubMed Web of Science ®Google Scholar
• Hernandez, P., S. S. Lamm, C. A. Bjerknes, and J. Van’t Hof. 1988. Replication termini in the rDNA of synchronized pea root cells (Pisum sativum). EMBO J. 7:303-308.
   PubMedGoogle Scholar
• Hieter, P., C. Mann, M. Snyder, and R. W. Davis. 1985. Mitotic stability of yeast chromosomes: a colony color assay that measures nondisjunction and chromosome loss. Cell 40:381-392.
   PubMedGoogle Scholar
• Huberman, J. A. 1968. Visualization of replicating mammalian and T4 bacteriophage DNA. Cold Spring Harbor Symp. Quant. Biol. 33:509-523.
   PubMedGoogle Scholar
• Huberman, J. A., and A. D. Riggs. 1968. On the mechanism of DNA replication in mammalian chromosomes. J. Mol. Biol. 32:327-341.
   PubMed Web of Science ®Google Scholar
• Huberman, J. A., L. D. Spotila, K. A. Nawotka, S. M. El-Assouli, and L. R. Davis. 1987. The in vivo replication origin of the yeast 2|μm plasmid. Cell 51:473-481.
   PubMed Web of Science ®Google Scholar
• Huberman, J. A., and A. Tsai. 1973. Direction of DNA replication in mammalian cells. J. Mol. Biol. 75:5-12.
   PubMed Web of Science ®Google Scholar
• Huberman, J. A., J. Zhu, L. R. Davis, and C. S. Newlon. 1988. Close association of a DNA replication origin and an ARS element on chromosome III of the yeast, Saccharomyces cerevisiae. Nucleic Acids Res. 16:6373-6384.
   PubMed Web of Science ®Google Scholar
• Jackson, P. A., and P. R. Cook. 1985. A general method for preparing chromatin containing intact DNA. EMBO J. 4:913-918.
   PubMedGoogle Scholar
• Kemper-Veenstra, A. E., J. Oliemans, H. Offenberg, A. F. Dekker, P. W. Piper, R. J. Planta, and J. Klootwijk. 1986. 3′- End formation of transcripts from the yeast rRNA operon. EMBO J. 5:2703-2710.
   PubMedGoogle Scholar
• Koshland, D., J. C. Kent, and L. H. Hartwell. 1985. Genetic analysis of the mitotic transmission of minichromosomes. Cell 40:393-403.
   PubMedGoogle Scholar
• Liu, L. F., and J. C. Wang. 1987. Supercoiling of the DNA template during transcription. Proc. Natl. Acad. Sci. USA 84:7024-7027.
   PubMed Web of Science ®Google Scholar
• McKnight, S. L., M. Bustin, and O. L. Miller, Jr. 1977. Electron microscopic analysis of chromosome metabolism in the Drosophila melanogaster embryo. Cold Spring Harbor Symp. Quant. Biol. 42:741-754.
   Google Scholar
• McMahon, M. E., D. Stamenkovich, and T. D. Petes. 1984. Tandemly arranged variant 5S ribosomal RNA genes in the yeast Saccharomyces cerevisiae. Nucleic Acids Res. 12:8001-8016.
   PubMedGoogle Scholar
• Nawotka, K. A., and J. A. Huberman. 1988. Two-dimensional gel electrophoretic method for mapping DNA replicons. Mol. Cell. Biol. 8:1408-1413.
   PubMedGoogle Scholar
• Overhauser, J., and M. Z. Radic. 1987. Encapsulating of cells in agarose beads for use with pulsed-field electrophoresis. Focus 9(3):8-9.
   Google Scholar
• Phillippsen, P., M. J. Thomas, R. A. Kramer, and R. W. Davis. 1978. Unique arrangement of coding sequences for 5S, 5.8S, 18S and 25S ribosomal RNA in Saccharomyces cerevisiae as determined by R-loop and hybridization analysis. J. Mol. Biol. 123:387-404.
   PubMedGoogle Scholar
• Rubtsov, P. M., M. M. Musakhanov, V. M. Zakharyev, A. S. Krayev, K. G. Skryabin, and A. A. Bayev. 1980. The structure of the yeast ribosomal RNA genes. I. The complete nucleotide sequence of the 18S ribosomal RNA gene from Saccharomyces cerevisiae. Nucleic Acids Res. 8:5779-5794.
   PubMed Web of Science ®Google Scholar
• Saffer, L. D., and O. L. Miller, Jr. 1986. Electron microscopic study of Saccharomyces cerevisiae rDNA chromatin replication. Mol. Cell. Biol. 6:1148-1157.
   PubMed Web of Science ®Google Scholar
• Skryabin, K. G., M. A. Eldarov, V. L. Larionov, A. A. Bayev, J. Klootwijk, V. C. H. F. de Regt, G. M. Veldman, R. J. Planta, O. I. Georgiev, and A. A. Hadjiolov. 1984. Structure and function of the nontranscribed spacer regions of yeast rDNA. Nucleic Acids Res. 12:2955-2968.
   PubMedGoogle Scholar
• Stinchcomb, D. T., K. Struhl, and R. W. Davis. 1979. Isolation and characterization of a yeast chromosomal replicator. Nature (London) 282:39-43.
   PubMed Web of Science ®Google Scholar
• Valenzuela, P., G. I. Bell, A. Venegas, E. T. Sewell, F. R. Masiarz, L. J. DeGennaro, F. Weinberg, and W. J. Rutter. 1977. Ribosomal RNA genes of Saccharomyces cerevisiae. II. Physical map and nucleotide sequence of the 5S ribosomal RNA gene and adjacent intergenic regions. J. Biol. Chem. 252:8126-8135.
   PubMedGoogle Scholar
• Walmsley, R. M., L. H. Johnston, D. H. Williamson, and S. G. Oliver. 1984. Replicon size of yeast ribosomal DNA. Mol. Gen. Genet. 195:260-266.
   PubMedGoogle Scholar
• Zamb, T. J., and T. D. Petes. 1982. Analysis of the junction between ribosomal RNA genes and single-copy chromosomal sequences in the yeast Saccharomyces cerevisiae. Cell 28:355-364.
   PubMedGoogle Scholar