Bent DNA Functions as a Replication Enhancer in Saccharomyces cerevisiae

LITERATURE CITED

• Anderson, J. N. 1986. Detection, sequence patterns and function of unusual DNA structures. Nucleic Acids Res. 14:8513–8533.
   PubMed Web of Science ®Google Scholar
• Bossi, L., and D. M. Smith. 1984. Conformational change in the DNA associated with an unusual promoter mutation in a tRNA operon of Salmonella. Cell 39:643–652.
   PubMed Web of Science ®Google Scholar
• Bouton, A. H., and M. M. Smith. 1986. Fine-structure analysis of the DNA sequence requirements for autonomous replication of Saccharomyces cerevisiae plasmids. Mol. Cell. Biol. 6:2354–2363.
   PubMedGoogle Scholar
• Bouton, A. H., V. B. Stirling, and M. M. Smith. 1987. Analysis of DNA sequences homologous with the ARS core consensus in Saccharomyces cerevisiae. Yeast 3:107–115.
   PubMedGoogle Scholar
• Brewer, B. J., and W. L. Fangman. 1987. The localization of replication origins on ARS plasmids in S. cerevisiae. Cell 51:463–471.
   PubMed Web of Science ®Google Scholar
• Broach, J. R., Y. Li, J. Feldman, M. Jayaram, J. Abraham, K. Nasmyth, and J. Hicks. 1983. Localization and sequence analysis of yeast origins of DNA replication. Cold Spring Harbor Symp. Quant. Biol. 47:1165–1173.
   PubMedGoogle Scholar
• Campbell, J. L. 1986. Eukaryotic DNA replication. Annu. Rev. Biochem. 55:733–771.
   PubMed Web of Science ®Google Scholar
• Celniker, S. E., K. Sweder, F. Srienc, J. E. Bailey, and J. L. Campbell. 1984. Deletion mutations affecting autonomously replicating sequence ARS1 of Saccharomyces cerevisiae. Mol. Cell. Biol. 4:2455–2466.
   PubMedGoogle Scholar
• Chen, E. Y., and P. H. Seeburg. 1985. Supercoil sequencing: a fast and simple method for sequencing plasmid DNA. DNA 4:165–169.
   PubMedGoogle Scholar
• Eckdahl, T. T., and J. N. Anderson. 1987. Computer modelling of DNA structures involved in chromosome maintenance. Nucleic Acids Res. 15:8531–8545.
   PubMed Web of Science ®Google Scholar
• Fangman, W. L., R. H. Hice, and E. Chlebowicz-Sledziewska. 1983. ARS replication during the yeast S phase. Cell 32:831–838.
   PubMed Web of Science ®Google Scholar
• Huberman, J. A. 1987. Eukaryotic DNA replication: a complex picture partially clarified. Cell 48:7–8.
   PubMedGoogle Scholar
• Huberman, J. A., L. D. Spotila, K. A. Nawotka, S. M. El-Assouli, and L. R. Davis. 1987. The in vivo replication origin of the yeast 2µ. plasmid. Cell 51:473–481.
   PubMed Web of Science ®Google Scholar
• Ito, H., Y. Fukuda, K. Murata, and A. Kimura. 1983. Transformation of intact yeast cells treated with alkali cations. J. Bacteriol 153:163–168.
   PubMed Web of Science ®Google Scholar
• Jazwinski, S. M., and G. M. Edelman. 1982. Protein complexes from active replicative fractions associate in vitro with the replication origins of yeast 2-µm DNA plasmid. Proc. Natl. Acad. Sci. USA 79:3428–3432.
   PubMed Web of Science ®Google Scholar
• Jazwinski, S. M., A. Niedzwiecka, and G. M. Edelman. 1983. In vitro association of a replication complex with a yeast chromosomal replicator. J. Biol. Chem. 258:2754–2757.
   PubMedGoogle Scholar
• Kearsey, S. 1984. Structural requirements for the function of a yeast chromosomal replicator. Cell 37:299–307.
   PubMed Web of Science ®Google Scholar
• Kearsey, S. 1986. Replication origins in yeast chromosomes. Bioessays 4:157–161.
   Google Scholar
• Koepsel, R. R., and S. Khan. 1986. Static and initiator protein-enhanced bending of DNA at a replication origin. Science 233:1316–1318.
   PubMed Web of Science ®Google Scholar
• Koo, H.-S., J.-M. Wu, and D. M. Crothers. 1986. DNA bending at adenine-thymine tracts. Nature (London) 320:501–506.
   PubMed Web of Science ®Google Scholar
• Kornberg, A. 1980. DNA replication. W. H. Freeman and Co., New York.
   Google Scholar
• Linial, M., and J. Shlomai. 1987. The sequence-directed bent structure in kinetoplast DNA is recognized by an enzyme from Crithidia fasciculata. J. Biol. Chem. 262:15194–15201.
   PubMedGoogle Scholar
• Linial, M., and J. Shlomai. 1987. Sequence-directed bent DNA helix is the specific binding site for Crithidia fasciculata nicking enzyme. Proc. Natl. Acad. Sci. USA 84:8205–8209.
   PubMed Web of Science ®Google Scholar
• Maniatis, T., E. F. Fritsch, and J. Sambrook. 1982. Molecular cloning, a laboratory manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
   Google Scholar
• Montiel, J. F., C. J. Norbury, M. F. Tuite, M. J. Dobson, J. S. Mills, A. J. Kingsman, and S. M. Kingsman. 1984. Characterization of human chromosomal DNA sequences which replicate autonomously in Saccharomyces cerevisiae. Nucleic Acids Res. 12:1049–1068.
   PubMed Web of Science ®Google Scholar
• Mukherjee, S., I. Patel, and D. Bastia. 1985. Conformational changes in a replication origin induced by an initiator protein. Cell 43:189–197.
   PubMedGoogle Scholar
• Newlon, C. S., R. J. Devenish, P. A. Suci, and C. J. Roffis. 1981. Replication origins used in vivo in yeast. ICN-UCLA Symp. Mol. Cell. Biol. 21:501–516.
   Google Scholar
• Sanger, F., S. Nicklen, and A. R. Coulson. 1977. DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. USA 74:5463–5467.
   PubMed Web of Science ®Google Scholar
• Snyder, M., A. R. Buchman, and R. W. Davis. 1986. Bent DNA at a yeast autonomously replicating sequence. Nature (London) 324:87–89.
   PubMed Web of Science ®Google Scholar
• Srienc, F., J. E. Bailey, and J. L. Campbell. 1985. Effect of ARS1 mutations on chromosome stability in Saccharomyces cerevisiae. Mol. Cell. Biol. 5:1676–1684.
   PubMedGoogle Scholar
• Stinchcomb, D. T., K. Struhl, and R. W. Davis. 1979. Isolation and characterisation of a yeast chromosomal replicator. Nature (London) 282:39–43.
   PubMed Web of Science ®Google Scholar
• Strich, R., M. Woontner, and J. F. Scott. 1986. Mutations in ARS1 increase the rate of simple loss of plasmids in Saccharomyces cerevisiae. Yeast 2:169–178.
   PubMedGoogle Scholar
• Struhl, K., D. T. Stinchcomb, S. Shere, and R. W. Davis. 1979. High frequency transformation of yeast: autonomous replication of hybrid DNA molecules. Proc. Natl. Acad. Sci. USA 76:1035–1039.
   PubMed Web of Science ®Google Scholar
• Taylor, J. H. 1987. Replication of DNA in eukaryotic chromosomes, p. 173–191. In W. Hennig (ed.), Results and problems in cell differentiation 14. Structure and function of eukaryotic chromosomes. Springer-Verlag, Berlin.
   Google Scholar
• Trifonov, E. N. 1985. Curved DNA. Crit. Rev. Biochem. 19:89–166.
   PubMed Web of Science ®Google Scholar
• Tschumper, G., and J. Carbon. 1980. Sequences of a yeast DNA fragment containing a chromosomal replicator and the TRP1 gene. Gene 10:157–166.
   PubMedGoogle Scholar
• Ulanovsky, L., and E. N. Trifonov. 1987. Estimation of wedge components in curved DNA. Nature (London) 326:720–722.
   PubMed Web of Science ®Google Scholar
• Vanderbilt, J. N., K. S. Bloom, and J. N. Anderson. 1982. Endogenous nuclease: properties and effects on transcribed genes in chromatin. J. Biol. Chem. 257:13009–13017.
   PubMed Web of Science ®Google Scholar
• Williamson, D. H. 1985. The yeast ARS element, six years on: a progress report. Yeast 1:1–14.
   PubMedGoogle Scholar
• Wu, H., and D. M. Crothers. 1984. The locus of sequence-directed and protein-induced DNA bending. Nature (London) 308:509–513.
   PubMed Web of Science ®Google Scholar
• Zahn, K., and F. R. Blattner. 1985. Sequence-induced DNA curvature at the bacteriophage λ origin of replication. Nature (London) 317:451–453.
   PubMed Web of Science ®Google Scholar
• Zahn, K., and F. R. Blattner. 1987. Direct evidence for DNA bending at the lambda replication origin. Science 236:416–422.
   PubMed Web of Science ®Google Scholar
• Zakian, V. A., and J. F. Scott. 1982. Construction, replication, and chromatin structure of TRP1 R1 circle, a multiple-copy synthetic plasmid derived from Saccharomyces cerevisiae chromosomal DNA. Mol. Cell. Biol. 2:221–232.
   PubMed Web of Science ®Google Scholar