Purification and Characterization of OBF1: a Saccharomyces cerevisiae Protein That Binds to Autonomously Replicating Sequences†

LITERATURE CITED

• Alberts, B., and G. Herrick. 1971. DNA-cellulose chromatography. Methods Enzymol. 21:198–217.
   Google Scholar
• Brand, A. H., G. Micklem, and K. Nasmyth. 1987. A yeast silencer contains sequences that can promote autonomous plasmid replication and transcriptional activation. Cell 51:709–719.
   PubMedGoogle Scholar
• Brewer, B. J., and W. L. Fangman. 1987. The localization of replication origins on ARS plasmids in 5. cerevisiae. Cell 51:463–471.
   PubMed Web of Science ®Google Scholar
• Broach, J., Y. Y. Li, J. Feldman, M. Jayaram, J. Abraham, K. A. Nasmyth, and J. B. Hicks. 1983. Localization and sequence analysis of yeast origins of DNA replication. Cold Spring Harbor Symp. Quant. Biol. 47:1165–1173.
   PubMedGoogle Scholar
• Buchman, A. R., W. J. Kimmerly, J. Rine, and R. Kornberg. 1988. Two DNA-binding factors recognize specific sequences at silencers, upstream activating sequences, autonomously replicating sequences, and telomeres in Saccharomvces cerevisiae. Mol. Cell. Biol. 8:210–225.
   PubMed Web of Science ®Google Scholar
• Celniker, S. E., and J. L. Campbell. 1982. Yeast DNA replication in vitro: initiation and elongation events mimic in vivo processes. Cell 31:201–213.
   PubMedGoogle Scholar
• Celniker, S. E., K. Sweder, F. Srienc, J. E. Bailey, and J. L. Campbell. 1984. Deletion mutations affecting autonomously replicating sequence ARS1 of Saccharomvces cerevisiae. Mol. Cell. Biol. 4:2455–2466.
   PubMedGoogle Scholar
• Chan, C. S. M., and B. K. Tye. 1983. Organization of DNA sequences and replication origins at yeast telomeres. Cell 33:563–573.
   PubMed Web of Science ®Google Scholar
• Diffley, J. F. X., and B. Stillman. 1988. Purification of a yeast protein that binds to origins of DNA replication and a transcriptional silencer. Proc. Natl. Acad. Sci. USA 85:2120–2124.
   PubMed Web of Science ®Google Scholar
• Eisenberg, S., C. Civalier, and B. K. Tye. 1988. Specific interaction between a Saccharomyces cerevisiae protein and a DNA element associated with certain autonomously replicating sequences. Proc. Natl. Acad. Sci. USA 85:743–746.
   PubMedGoogle Scholar
• Huberman, J. L., D. L. Spotila, K. A. Nawotka, S. M. El-Assouli, and R. Davies. 1987. The in vivo replication origin of the yeast 2 μm plasmid. Cell 51:473–481.
   PubMed Web of Science ®Google Scholar
• Huberman, J. L., J. Zhu, R. L. Davies, and C. S. Newlon. 1988. Close association of a DNA replication origin and an ARS element on chromosome Ill of the yeast, Saccharomyces cerevisiae. Nucleic Acids Res. 16:6373–6383.
   PubMed Web of Science ®Google Scholar
• Jazwinski, M. S., A. Niedzwiecka, and G. M. Edelman. 1983. In vitro association of a replication complex with a yeast chromosomal replicator. J. Biol. Chem. 258:2754–2757.
   PubMedGoogle Scholar
• Kearsy, S.. 1984. Structural requirements for the function of a yeast chromosomal replicator. Cell 37:299–307.
   PubMedGoogle Scholar
• Kimmerly, W., A. Buchman, R. Kornberg, and J. Rine. 1988. Roles of two DNA-binding proteins in replication, segregation and transcriptional repression mediated by a yeast silencer. EMBO J. 7:2241–2253.
   PubMedGoogle Scholar
• Kojo, H., B. D. Greenberg, and A. Sugino. 1981. Yeast 2-μm plasmid DNA replication in vitro: origin and direction. Proc. Natl. Acad. Sci. USA 78:7261–7265.
   PubMed Web of Science ®Google Scholar
• Laemmli, U. K.. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature (London) 227:680–685.
   PubMed Web of Science ®Google Scholar
• Lowry, O. H., N. J. Rosebrough, and R. J. Randall. 1951. Protein measurement with the Folin phenol reagent. J. Biol. Chem. 193:265–275.
   PubMed Web of Science ®Google Scholar
• Newlon, C. S., R. J. Devenish, P. A. Suci, and C. J. Roffis. 1981. Replication origins used in yeast. ICN-UCLA Symp. Mol. Cell. Biol. 22:501–516.
   Google Scholar
• O'Neill, E. A., and T. J. Kelly. 1988. Purification and characterization of nuclear factor III (origin recognition protein C), a sequence-specific DNA binding protein required for efficient initiation of adenovirus DNA replication. J. Biol. Chem. 263:931–937.
   PubMed Web of Science ®Google Scholar
• Palzkill, T. G., and C. S. Newlon. 1988. A yeast replication origin consists of multiple copies of a small conserved sequence. Cell 53:441–450.
   PubMedGoogle Scholar
• Rosenfeld, P. J., and T. J. Kelly. 1986. Purification of nuclear factor I by DNA recognition site affinity chromatography. J. Biol. Chem. 261:1398–1408.
   PubMed Web of Science ®Google Scholar
• Saffer, L. D., and O. L. Miller, Jr.. 1986. Electron microscopic study of Saccharomvces cerevisiae DNA chromatin replication. Mol. Cell. Biol. 6:1148–1157.
   PubMed Web of Science ®Google Scholar
• Sammons, D. W., L. D. Adams, and E. E. Nishizawa. 1981. Ultrasensitive silver-based color staining of polypeptides in polyacrylamide gels. Electrophoresis 2:135–141.
   Web of Science ®Google Scholar
• Shore, D., D. J. Stillman, A. H. Brand, and K. A. Nasmyth. 1987. Identification of silencer binding proteins from yeast: possible roles in SIR control and DNA replication. EMBO J. 6:461–467.
   PubMed Web of Science ®Google Scholar
• Siegel, L. M., and K. J. Monty. 1966. Determination of molecular weights and frictional ratios of proteins in impure systems by use of gel filtration and density gradient centrifugation. Application to crude preparations of sulfite and hydroxylamine reductase. Biochim. Biophys. Acta 112:346–362.
   PubMed Web of Science ®Google Scholar
• Snyder, M., A. R. Buchman, and R. W. Davies. 1986. Bent DNA at a yeast autonomously replicating sequence. Nature (London) 324:87–89.
   PubMed Web of Science ®Google Scholar
• Sober, H. A. (ed.). 1970. Handbook of biochemistry, 2nd ed. The Chemical Rubber Co., Cleveland.
   Google Scholar
• Stinchcomb, D. T., K. Struhl, and R. W. Davies. 1979. Isolation and characterization of a yeast chromosomal replicator. Nature (London) 282:39–43.
   PubMed Web of Science ®Google Scholar
• Sweder, K. S., P. R. Rhode, and J. L. Campbell. 1988. Purification and characterization of proteins that bind to yeast ARSs. J. Biol. Chem. 263:17270–17277.
   PubMed Web of Science ®Google Scholar
• Tschumper, G., and J. Carbon. 1980. Sequence of a yeast DNA fragment containing a chromosomal replicator and the TRPI gene. Gene 10:157–166.
   PubMedGoogle Scholar
• Walker, S. S., S. C. Francesconi, B.-K. Tye, and S. Eisenberg. 1989. The OBF1 protein and its DNA-binding site are important for the function of an autonomously replicating sequence in Saccharomyces cerevisiae. Mol. Cell. Biol. 9:2914–2921.
   PubMedGoogle Scholar