Homology of complete genome sequences for dengue virus type-1, from dengue-fever- and dengue-haemorrhagic-fever-associated epidemics in Hawaii and French Polynesia

References

• Adams, B., Holmes, E. C., Zhang, C., Mammen Jr, M. P., Nimmannitya, S., Kalayanarooj, S. & Boots, M. (2006). Cross-protective immunity can account for the alternating epidemic pattern of dengue serotypes circulating in Bangkok. Proceedings of the National Academy of Sciences of the United States of America, 103, 1423-1429.
   Google Scholar
• Barnes, W. J. & Rosen, L. (1974). Fatal hemorrhagic disease and shock associated with primary dengue infection on a Pacific island. American Journal of Tropical Medicine and Hygiene, 23, 495–506.
   PubMed Web of Science ®Google Scholar
• Bennett, S. N., Holmes, E. C., Chirivella, M., Rodriguez, D. M., Beltran, M., Vorndharn, V., Gubler, D. J. & McMillan, W. O. (2003). Selection-driven evolution of emergent dengue virus. Molecular Biology and Evolution, 20, 1650–1658.
   PubMed Web of Science ®Google Scholar
• Chambers, T. J., Hahn, C. S., Galler, R. & Rice, C. M. (1990). Flavivirus genome organization, expression, and replication. Annual Review of Microbiology, 44, 649–688.
   PubMed Web of Science ®Google Scholar
• Chen, W. J., Wei, H. L., Hsu, E. L. & Chen, E. R. (1993). Vector competence of Aedes albopictus and Ae. aegypti (Diptera: Culicidae) to dengue 1 virus on Taiwan: development of the virus in orally and parenterally infected mosquitoes. Journal of Medical Entomology, 30, 524–530.
   PubMed Web of Science ®Google Scholar
• Chungue, E., Burucoa, C., Boutin, J. P., Philippon, G., Laudon, F., Plichart, R., Barbazan, P., Cardines, R. & Roux, J. (1992a). Dengue 1 epidemic in French Polynesia, 1988-1989: surveillance and clinical, epidemiological, virological and serological findings in 1752 documented clinical cases. Transactions of the Royal Society of Tropical Medicine and Hygiene, 86, 193–197.
   PubMed Web of Science ®Google Scholar
• Chungue, E., Glaziou, P., Spiegel, A., Martin, P. M. & Roux, J. F. (1992b). Estimation of dengue infection attack rate in a cohort of children during a dengue 3 outbreak in Tahiti, 1989-90. Southeast Asian Journal of Tropical Medicine and Public Health, 23, 157–158.
   PubMedGoogle Scholar
• Chungue, E., Deubel, V., Cassar, O., Laille, M. & Martin, P. M. V. (1993). Molecular epidemiology of dengue 3 viruses and genetic relatedness among dengue 3 strains isolated from patients with mild or severe form of dengue fever in French Polynesia. Journal of General Virology, 74, 2765–2770.
   PubMed Web of Science ®Google Scholar
• Cologna, R & Rico-Hesse, R. (2003). American genotype structures decrease dengue virus output from human monocytes and dendritic cells. Journal of Virology, 77, 3929–3938.
   PubMed Web of Science ®Google Scholar
• Deparis, X., Murgue, B., Roche, C., Cassar, O. & Chungue, E. (1998). Changing clinical and biolo-gical manifestations of dengue during the dengue-2 epidemic in French Polynesia in 1996/97 - description and analysis in a prospective study. Tropical Medicine and International Health, 3, 859–865.
   PubMed Web of Science ®Google Scholar
• Effler, P. V., Pang, L., Kitsutani, P., Vorndam V., Nakata, M., Ayers, T., Elm, J., Tom, T., Reiter, P., Rigau-Perez, J. G., Hayes, J. M., Mills, K., Napier, M., Clark, G. G., Gubler, D. J. & Hawaii Dengue Outbreak Investigation Team (2005). Dengue fever, Hawaii, 2001-2002. Emerging Infectious Diseases, 11, 742-749.
   Google Scholar
• Fujita, N. & Yoshida, K. (1979). Follow-up studies on dengue endemic in Nagasaki, Japan: detection of specific antibodies in the serum taken more than 30 years after a single attack of dengue. Kobe Journal of Medical Science, 25, 217–224.
   PubMedGoogle Scholar
• Gubler, D. J., Reed, D., Rosen, L. & Hitchcock, J. C. J. (1978). Epidemiologic, clinical and virologic obser-vations on dengue in the Kingdom of Tonga. American Journal of Tropical Medicine and Hygiene, 27, 581–589.
   PubMed Web of Science ®Google Scholar
• Guzman, M. G., Deubel, V., Pelegrino, J. L., Rosario, D., Marrero, M., Sariol, C. & Kouri, G. (1995). Partial nucleotide and amino acid sequences of the envelope and the envelope/nonstructural protein-1 gene junction of four dengue-2 virus strains isolated during the 1981 Cuban epidemic. American Journal of Tropical Medicine and Hygiene, 52, 241–246.
   PubMed Web of Science ®Google Scholar
• Halstead, S. B. (1982). Immune enhancement of viral replication. Progress in Allergy, 31, 301–364.
   PubMedGoogle Scholar
• Holmes, E. C. & Twiddy, S. S. (2003). The origin, emergence and evolutionary genetics of dengue virus. Infection, Genetics, and Evolution, 3, 19–28.
   PubMed Web of Science ®Google Scholar
• Huson, D. H. (1998). SplitsTree: analyzing and visualizing evolutionary data. Bioinformatics, 14, 68–73.
   PubMed Web of Science ®Google Scholar
• Innis, B. L. (1997). Antibody responses to dengue virus infection. In Dengue and Dengue Hemorrhagic Fever, eds Gubler, D. J. & Kuno, G. pp. 221-243. New York, NY: CABI Publishing.
   Google Scholar
• Imrie, A., Zhao, Z., Bennett, S. N., Kitsutani, P. & Effler, P. (2006). Molecular epidemiology of dengue in the Pacific: introduction of two distinct strains of dengue virus type-1 into Hawaii. Annals of Tropical Medicine and Parasitology, 100, 327–336.
   PubMed Web of Science ®Google Scholar
• Imrie, A., Meeks, J., Gurary, A., Sukhbaatar, M., Kitsutani, P., Effler, P. & Zhao, Z. (2007a). Differential functional avidity of dengue virus-speci-fic T-cell clones for variant peptides representing heterologous and previously encountered serotypes. Journal of Virology, 81, 10,081-10,091.
   Google Scholar
• Imrie, A., Meeks, J., Gurary, A., Suhkbaatar, M., Truong, T. T., Cropp, B. & Effler, P. (2007b). Antibody to dengue 1 detected more than 60 years after infection. Viral Immunology, 20, 672–675.
   PubMed Web of Science ®Google Scholar
• Kochel, T. J., Watts, D. M., Halstead, S. B., Hayes, C. G., Espinoza, A., Felices V., Caceda, R., Bautista, C. T., Montoya, Y., Douglas, S. & Russell, K. L. (2002). Effect of dengue-1 antibodies on American dengue-2 viral infection and dengue hemorrhagic fever. Lancet, 360, 310–312.
   PubMed Web of Science ®Google Scholar
• Kochel, T. J., Watts, D. M., Gozalo, A. S., Ewing, D. F., Porter, K. R. & Russell, K. L. (2005). Cross-serotype neutralization of dengue virus in Aotus nancymae monkeys. Journal of Infectious Diseases, 91, 1000–1004.
   Web of Science ®Google Scholar
• Laille, M. & Roche, C. (2004). Comparison of dengue-1 envelope glycoprotein sequences from French Polynesia. American Journal of Tropical Medicine and Hygiene, 71, 478–484.
   PubMed Web of Science ®Google Scholar
• Leitmeyer, K. C., Vaughn, D. W., Watts, D. M., Salas, R., Villalobos de Chacon, I., Ramos, C. & Rico-Hesse, R. (1999). Dengue virus structural differences that correlate with pathogenesis. Journal of Virology, 73, 4738-4747.
   Google Scholar
• Messer, W. B., Gubler, D. J., Harris, E., Sivananthan, K. & de Silva, A. M. (2003). Emergence and global spread of a dengue serotype 3, subtype III virus. Emerging Infectious Diseases, 9, 800–809.
   PubMed Web of Science ®Google Scholar
• Murgue, B., Deparis, X., Chungue, E., Cassar, O. & Roche, C. (1999). Dengue: an evaluation of dengue severity in French Polynesia based on an analysis of 403 laboratory-confirmed cases. Tropical Medicine and International Health, 4, 765–773.
   PubMed Web of Science ®Google Scholar
• Murgue, B., Roche, C., Chungue, E. & Deparis, X. (2000). Prospective study of the duration and magnitude of viremia in children hospitalized during the 1996-1997 dengue-2 outbreak in French Polynesia. Journal of Medical Virology, 60, 432–438.
   PubMed Web of Science ®Google Scholar
• Neff, J. M., Morris, L., Gonzalex-Alcover, R., Coleman, P. H., Lyss, S. B. & Negron, H. (1967). Dengue fever in a Puerto Rican community. American Journal of Epidemiology, 85, 162–184.
   Google Scholar
• Okuno, Y., Fukunaga, T., Tadano, M., Fukai, K., Ikeda, T., Sekii, K. & Ariyoshi, H. (1983). Serological studies on volunteers inoculated experi-mentally with a dengue virus strain in 1943. Biken Journal, 26,161–163.
   PubMedGoogle Scholar
• Pinheiro, F. & Nelson, M. (1997). Re-emergence of Dengue and Emergence of Dengue Hemorrhagic Fever in the Americas. Dengue Bulletin Volume 21. New Delhi: World Health Organization.
   Google Scholar
• Rico-Hesse, R. (2003). Microevolution and virulence of dengue viruses. Advances in Virus Research, 59,315–341.
   PubMed Web of Science ®Google Scholar
• Rico-Hesse, R. Harrison, L. M., Salas, R A., Tovar, D., Nisalak, A., Ramos, C., Boshell, J., de Mesa, M. T., Nogueira, R M. & da Rosa, A. T. (1997). Origins of dengue type 2 viruses associated with increased pathogenicity in the Americas. Virology, 230, 244-251.
   Google Scholar
• Roche, C., Cassar, O., Laille, M. & Murgue, B. (2007). Dengue-3 virus genomic differences that correlate with in vitro phenotype on a human cell line but not with disease severity. Microbes and Infection, 9, 63–69.
   PubMed Web of Science ®Google Scholar
• Rosen, L. (1977). The Emperor's New Clothes revisited, or reflections on the pathogenesis of dengue hemorrhagic fever. American Journal of Tropical Medicine and Hygiene, 26,337–343.
   PubMed Web of Science ®Google Scholar
• Rothman, A. L. & Ennis, F. A. (1999). Immunopathogenesis of dengue hemorrhagic fever. Virology, 257,1–6.
   PubMed Web of Science ®Google Scholar
• Sierra, B., Garcia, G., Perez, A. B., Morier, L., Rodriguez, R, Alvarez, M. & Guzmán, M. G. (2002). Long-term memory cellular immune responses to dengue virus after a natural primary infection. International Journal of Infectious Diseases, 6, 125–128.
   PubMedGoogle Scholar
• Singh, N., Kiedrzynski, T., Lepers, C. & Benyon, E. K. (2005). Dengue in the Pacific — an update of the current situation. Pacific Health Surveillance and Response, 12, 111–119.
   Google Scholar
• Stamatakis, A., Hoover, P. & Rougemont, J. A. (2008). Rapid bootstrap algorithm for the RA x ML web servers. Systematic Biology, 75,758–771.
   Web of Science ®Google Scholar
• Swofford, D. L. (2002). PA UP, Phylogenetic Analysis Using Parsimony, Version 4.0b. Sutherland, MA: Sinauer.
   Google Scholar
• Thein, S., Aung, M. M., Shwe, T. N., Aye, M., Zaw, A., Aye, K. Aye, K. M. & Aaskov, J. (1997). Risk factors in dengue shock syndrome. American Journal of Tropical Medicine and Hygiene, 56,566-572.
   Google Scholar
• Watts, D. M., Porter, K. R., Putvatana, P., Vasquez, B., Calampa, C. Hayes, C. G. & Halstead, S. B. (1999). Failure of secondary infection with American genotype dengue 2 to cause dengue hemorrhagic fever. Lancet, 354,1431-1434.
   Google Scholar
• World Health Organization (2002). Dengue and Dengue Hemorrhagic Fever. Fact Sheet No. 117. Geneva: WHO.
   Google Scholar
• Zivna, I., Green, S., Vaughn, D. W., Kalayanarooj, S., Stephens, H. A. F., Chandanayingyong, D., Nisalak, A., Ennis, F. A. & Rothman, A. L. (2002). T cell responses to an HLA-B*07-restricted epitope on the dengue N53 protein correlate with disease severity. Journal of Immunology, 168, 5959–5965.
   PubMed Web of Science ®Google Scholar