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Articles

Phylogeography of Homalothecium sericeum (Hedw.) Br. Eur.; toward a reconstruction of glacial survival and postglacial migration

Pages 283-292 | Published online: 18 Jul 2013

References

  • Bakker FT, Olsen JJ, Stam WT. 1995. Evolution of rDNA ITS sequences in the Cladophora albidalsericea clade (Chlorophyta). Journal of Molecular Evolution 40: 640–651.
  • Baldwin GB. 1992. Phylogenetic utility of the Internal Transcribed Spacers of nuclear ribosomal DNA in plants: an example from the Compositae. Molecular Phylogenetics and Evolution 1: 3–16.
  • Barton NH, I Wilson. 1996. Genealogies and geography. In: Harvey, PH, Leigh Brown AJ, Maynard Smith J, Nee S, eds. New uses for new phylogenies. Oxford: Oxford University Press, 23–56.
  • Belland RJ 1987. The moss flora of the Gulf of St. Lawrence region: ecology and phytogeography. Journal of the Hattori Botanical Laboratory 62: 205–267.
  • Bennett KD 1990. Milankovitch cycles and their effects on species in ecological and evolutionary time. Paleobiology 16: 11–21.
  • Birks HH, Ammatm B. 2000. Two terrestrial records of rapid climate change during the glacial-Holocene transition (14,000-9,000 calendar years BP) for Europe. Proceedings of the National Academy of Science of the USA 97: 1390–1394.
  • Birks HJB. 1989. Holocene isochrone maps and patterns of tree-spreading in the British Isles. Journal of Biogeography 18: 103–115.
  • Bromham L, Penny D. 2003. The modern molecular clock. Nature Reviews Genetics 4: 216–224.
  • Buckler ES, Ippolito A, Holtsford TP. 1997. The evolution of ribosomal DNA: divergent paralogues and phylogenetic implications. Genetics 145: 821–832.
  • Campbell CS, Wojciechowski MF, Baldwin BG, Alice LA, Donoghue MJ. 1997. Persistent nuclear ribosomal DNA polymorphism in the agamic Amelanchier complex (Rosaceae). Molecular Biology and Evolution 14: 81–90.
  • Chiang TY, Schaal BA. 1999. Phylogeography of North American populations of the moss species Hylocomium splendens based on the nucleotide sequence of internal transcribed spacer 2 of nuclear ribosomal DNA. Molecular Ecology 8: 1037–1042.
  • Clement M, Posada D, Crandall KA. 2000. TCS: a computer program to estimate gene genealogies. Molecular Ecology 9: 1657–1660.
  • Crum HA. 1972. The geographic origins of the mosses of North America's eastern deciduous forests. Journal of the Hattori Botanical Laboratory 35: 269–298.
  • Donnelly P, Tavaré S. 1995. Coalescents and genealogical structure under neutrality. Annual Review of Genetics 29: 410–421.
  • Doyle JJ, Doyle JL. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bulletin 19: 11–15.
  • Dyke AS, Andrews JT, Clarke PU, England HI, Miller GH, Shaw J, Veillette JJ. 2002. The Laurentide and Innuitian ice sheets during the Last Glacial Maximum. Quaternary Science Review 21: 9–31.
  • Dyke AS, Prest VK. 1987. Late Wisconsinan and Holocene history of the Laurentide Ice Sheet. Geographie Physique et Quaternaire 41: 237–263.
  • Faegri K, Iversen, J. 1989. Textbook of pollen analysis. Chichester: John Wiley & Sons.
  • Fernald ML. 1925. Persistence of plants in non-glaciated areas of boreal America. Memoirs of the American Acadamy of Arts, new series 15: 239–342.
  • Gangulee HC. 1978. Mosses of eastern India and adjacent regions, Vol. 3. Calcutta. Published by the author.
  • Gibbs MJ, Armstrong JS, Gibbs AJ. 2000. Sister-scanning: a Monte Carlo procedure for assessing signals in recombinant sequences. Bioinformatics 16: 573–582.
  • Griffiths RC. 1980. Lines of descent in the diffusion approximation of neutral Wright-Fisher models. Theoretical Population Biology 17: 37–50.
  • Harding RNI 1996. New phylogenies: an introductory look at the coalescent. In: Harvey PH, Leigh Brown AJ, Maynard Smith J, Nee S, eds. New uses for new phylogenies. Oxford: Oxford University Press, 15–22.
  • Hewitt GM. 1989. The subdivision of species by hybrid zones. In: Otte D, Endler J. eds. Speciation and its consequences. Sunderland, MA: Sinauer, 85–110.
  • Hewitt GM. 1999. Post-glacial re-colonisation of European biota. Biological Journal of the Linnean Society 68: 87–112.
  • Hewitt GM. 2000. The genetic legacy of the Quaternary ice ages. Nature 405: 907–913.
  • Hofmann H. 1998. A monograph of the genus Homalothecium (Brachytheciaceae, Musci). Lindbergia 23: 119–159.
  • Holdregger R, Abbot RJ. 2003. Phylogeography of the arctic-alpine Saxifraga oppositifolia (Saxifragaceae) and some related taxa based on cpDNA and ITS sequence variation. American Journal of Botany 90: 931–936.
  • Hudson RR, Coyne, JA. 2002. Mathematical consequences of the genealogical species concept. Evolution 56: 1557–1565.
  • Hultén E. 1937. Outline of the history of arctic and boreal biota during the Quaternary period. New York: L.J. Cramer.
  • Ibrahim K, Nichols RA, Hewitt GM. 1996. Spatial pattern of genetic variation generated by different forms of dispersal during range expansion. Heredity 77: 282–291.
  • Ignatov MS, Huttunen S. 2002. Brachytheciaceae (Bryophyta) - a family of sibling genera. Arctoa 11: 245–296.
  • Jaarola M, Tegelstrom H, Fredga K. 1999. Colonization history in Fennoscandian rodents. Biological Journal of the Linnean Society 68: 113–127.
  • Kimura M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution 10: 111–120.
  • King RA, Ferris C. 1998. Chloroplast DNA phylogeography of Alnus glutinosa (L.) Gaertn. Molecular Ecology 7: 1157–1161.
  • Knowles LL. 2004. The burgeoning field of statistical phylogeography. Journal of Evolutionary Biology 17: 1–10.
  • Kropf M, Kadereit JW, Comes HP. 2002. Late Quaternary distribu-tional stasis of the submediterranean mountain plant Anthyllis montana L. (Fabaceae) inferred from ITS sequences and amplified fragment length polymorphism markers. Molecular Ecology 11: 447–463.
  • Lischke H, Lotter AF, Fischlin A. 2002. Untangling a Holocene pollen record with forest model simulations and independent climate data. Ecological Modelling 150: 1–21.
  • Lunt DH, Ibrahim KM, Hewitt GM. 1998. MtDNA and post-glacial patterns of subdivision in the meadow grasshopper Chorthippus parallelus. Heredity 80: 63–641.
  • Martin D, Rybicld E. 2000. RDP: detection of recombination amongst aligned sequences. Bioinformatics 16: 562–563.
  • Martin D, Williamson C, Posada D. 2005. RDP2: recombination detection and analysis from sequence alignments. Bioinformatics 21: 260–262.
  • McDaniel SF, Shaw AJ. 2003. Phylogeographic structure and cryptic speciation in the trans-Antarctic moss Pyrrhobryum mnioides. Evolution 57: 202–215.
  • Miles CJ, Longton RE. 1990. The role of spores in reproduction in mosses. Botanical Journal of the Linnean Society 104: 149–173. Moore PD, Webb JA, CoHinson ME. 1991. Pollen analysis. Oxford:
  • Blackwell Scientific Publications.
  • Muñoz J. Felicisimo AM, Cabezas F, Burgaz AR, Martinez I. 2004. Wind as a long-distance dispersal vehicle in the Southern Hemisphere. Science 304: 1144–1147.
  • Nee S, Holmes EC, Rambaut A, Harvey PH. 1996. Inferring population history from molecular phylogenies. In: Harvey PH, Leigh Brown AJ, Maynard Smith J, Nee S, eds. New uses for new phylogenies. Oxford: Oxford University Press, 66–80.
  • Nichols RA, Hewitt GM. 1994. The genetic consequences of long distance dispersal during colonisation. Heredity 72: 312–317.
  • Nordborg M. 2001. Coalescent theory. In: Balding, DJ, Bishop M, Cannings C, eds. Handbook of statistical genetics. Chichester: Wiley, 179–212.
  • Olsen JL, Stam WT, Coyer JA, Reusch TBH, Billingham M, Boström C, Calvert E, Christie H, Granger S, La Lumiére R, Milchakova N, Oudot-Le Sec M, Procaccini G, Sanjabi B, Serraã E, Veldsink J, Widdicombe S, Wylie-Echeverria S. 2004. North Atlantic phylo-geography and large-scale population differentiation of the seagrass Zostera marina L. Molecular Ecology 13: 1923–1941.
  • Posada D, Crandall KA. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14: 817–818.
  • Redfearn P, Wu J, Wu PC. 1986. Catalogue of the mosses of China. Annals of the Missouri Botanical Garden 73: 177–208.
  • Rosenberg NA. 2003. The shapes of neutral gene genealogies in two species: probabilities of monophyly, paraphyly and polyphyly in a coalescent model. Evolution 57: 1465–1477.
  • Schierup MH, HeM J. 2000a. Consequences of recombination on traditional phylogenetic analysis. Genetics 156: 879–891.
  • Schierup MH, HeM J. 2000b. Recombination and the molecular clock. Molecular Biology and Evolution 17: 1578–1579.
  • Schuster RM. 1984. Phytogeography of the bryophyta. In: Schuster RM, ed. New manual of bryology. Nichinan: Hattori Botanical Laboratory, 463–636.
  • Shaw AJ. 2000a. Molecular phylogeography and cryptic speciation in the mosses Mielichhoferia elongata and M mielichhoferiana (Bryaceae). Molecular Ecology 9: 595–608.
  • Shaw AJ. 2000b. Population ecology, population genetics and microevolution. In: Shaw Ai, Goffinet B, eds. Bryophyte biology. Cambridge: Cambridge University Press, 369–402.
  • Swofford, DL. 1998. PAUP*. Phylogenetic analysis using parsimony (and other methods), Version 4. Sunderland, MA: Sinauer.
  • Taberlet P, Fumagalli L, Wust-Saucy AJ, Cossons JF. 1998. Comparative phylogeography and post-glacial colonization routes in Europe. Molecular Ecology 7: 453–464.
  • Tajima F. 1983. Evolutionary relationships of DNA sequences in finite populations. Genetics 105: 437–460.
  • Tavaré S. 1984. Line-of-descent and genealogical processes, and their applications in population genetic models. Theoretical Population Biology 26: 119–164.
  • Vargas P. 2003. Molecular evidence for multiple diversification patterns of alpine plants in Mediterranean Europe. Taxon 52: 463–476.
  • Webb P, Bartlein PJ. 1992. Global changes during the last 3 million years: climate controls and biotic responses. Annual Review of Ecology and Systematics 23: 141–173.
  • Wei X-X, Wang X-Q, Hong D-Y. 2003. Marked intragenomic hetero-geneity and geographical differentiation of nrDNA ITS in Larix potaninii (Pinaceae). Journal of Molecular Evolution 57: 623–635.
  • Williams JW, Post DM, Cwynar LC, Lotter AF, Levesque AJ. 2002. Rapid and widespread vegetation response to past climate change in the North Atlantic region. Geology 30: 971–974.
  • Wyatt R, Stoneburner A, Odrzykoski U. 1989. Bryophyte isozymes: systematic and evolutionary implications. In: Soltis DE, Soltis PM, eds. Isozymes in plant biology. Portland, OH: Dioscorides Press, 221–234.
  • Yu Z. 2003. Late Quaternary dynamics of tundra and forest vegetation in the southern Niagara escarpment, Ontario. New Phytologist 157: 365–390.a

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