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Original Articles

Isolation and Characterization of an Alcohol Dehydrogenase Gene from the Octylphenol Polyethoxylate Degrader Pseudomonas putida S-5

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Pages 1855-1863 | Received 10 Jan 2006, Accepted 09 Feb 2006, Published online: 22 May 2014

  • 1) White, R., Jobling, S., Hoare, S. A., Sumpter, J. P., and Parker, M. G., Environmentally persistent alkylphenolic compounds are estrogenic. Endocrinology, 135, 175–182 (1994).
  • 2) Laws, S. C., Carey, S. A., Ferrell, J. M., Bodman, G. J., and Cooper, R. L., Estrogenic activity of octylphenol, nonylphenol, bisphenol A and methoxychlor in rats. Toxicol. Sci., 54, 154–167 (2000).
  • 3) White, G. F., Bacterial biodegradation of ethoxylated surfactants. Pestic. Sci., 37, 159–166 (1993).
  • 4) Ahel, M., Hršak, D., and Giger, W., Aerobic transformation of short-chain alkylphenol polyethoxylates by mixed bacterial cultures. Arch. Environ. Contam. Toxicol., 26, 540–548 (1994).
  • 5) Kawai, F., Microbial degradation of polyethers. Appl. Microbiol. Biotechnol., 58, 30–38 (2002).
  • 6) Enokibara, S., and Kawai, F., Purification and characterization of an ether bond-cleaving enzyme involved in the metabolism of polyethylene glycol. J. Ferment. Bioeng., 83, 549–554 (1997).
  • 7) Sugimoto, M., Tanabe, M., Hataya, M., Enokibara, S., Duine, J. A., and Kawai, F., The first step in polyethylene glycol degradation by Sphingomonads proceeds via a flavoprotein alcohol dehydrogenase containing flavin adenine dinucleotide. J. Bacteriol., 183, 6694–6698 (2001).
  • 8) Stevens, P. J. G., and Bukovac, M. J., Studies on octylphenoxy surfactants. Part I. Effects of oxyethylene content on properties of potential relevance to foliar absorption. Pestic. Sci., 20, 19–35 (1987).
  • 9) Knoche, M., and Bukovac, M. J., Studies on octylphenoxy surfactants. XI. Effect of NAA diffusion through the isolated tomato fruit cuticular membrane. Pestic. Sci., 38, 211–217 (1993).
  • 10) Nishio, E., Ichiki, Y., Tamura, H., Morita, S., Watanabe, K., and Yoshikawa, H., Isolation of bacterial strains that produce the endocrine disruptor, octylphenol diethoxylates, in paddy fields. Biosci. Biotechnol. Biochem., 66, 1792–1798 (2002).
  • 11) Sato, H., Shibata, A., Wang, Y., Yoshikawa, H., and Tamura, H., Characterization of biodegradation intermediates of non-ionic surfactants by matrix-assisted laser desorption/ionization-mass spectrometry. 1. Bacterial biodegradation of octylphenol polyethoxylate under aerobic conditions. Polym. Degrad. Stab., 74, 69–75 (2001).
  • 12) Sato, H., Shibata, A., Wang, Y., Yoshikawa, H., and Tamura, H., Characterization of biodegradation intermediates of nonionic surfactants by MALDI-MS. 2. Oxidative biodegradation profiles of uniform octylphenol polyethoxylate in 18O-labeled water. Biomacromolecules, 4, 46–51 (2003).
  • 13) Obradors, N., and Aguilar, J., Efficient biodegradation of high-molecular-weight polyethylene glycols by pure cultures of Pseudomonas stutzeri. Appl. Environ. Microbiol., 57, 2383–2388 (1991).
  • 14) Malamy, M. H., and Horecker, B. L., Release of alkaline phosphatase from cells of Escherichia coli upon lysozyme spheroplast formation. Biochemistry, 3, 1889–1893 (1964).
  • 15) Cheng, K.-J., Ingram, J. M., and Costerton, J. W., Release of alkaline phosphatase from cells of Pseudomonas aeruginosa by manipulation of cation concentration and of pH. J. Bacteriol., 104, 748–753 (1970).
  • 16) Berlutti, F., Passariello, C., Selan, L., Thaller, M. C., and Rossolini, G. M., The Chryseobacterium meningosepticum PafA enzyme: prototype of a new enzyme family of prokaryotic phosphate-irrepressible alkaline phosphatases? Microbiology, 147, 2831–2839 (2001).
  • 17) Bradford, M. M., A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem., 72, 248–254 (1976).
  • 18) Ausubel, F. M., Brent, R., Kingston, R. E., Moore, D. E., Seidman, J. G., Smith, J. A., and Struhl, K., “Current Protocols in Molecular Biology,” John Wiley and Sons, New York, pp. 2.4.1–2.4.2 (1994).
  • 19) O’Sullivan, D. J., and Klaenhammer, T. R., Rapid mini-prep isolation of high-quality plasmid DNA from Lactococcus and Lactobacillus spp. Appl. Environ. Microbiol., 59, 2730–2733 (1993).
  • 20) van Beilen, J. B., Eggink, G., Enequist, H., Bos, R., and Witholt, B., DNA sequence determination and functional characterization of the OCT-plasmid-encoded alkJKL genes of Pseudomonas oleovorans. Mol. Microbiol., 6, 3121–3136 (1992).
  • 21) James, K. D., Hughes, M. A., and Williams, P. A., Cloning and expression of ntnD, encoding a novel NAD(P)+-independent 4-nitrobenzyl alcohol dehydrogenase from Pseudomonas sp. strain TW3. J. Bacteriol., 182, 3136–3141 (2000).
  • 22) Altschul, S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D. J., Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucl. Acids Res., 25, 3389–3402 (1997).
  • 23) Falquet, L., Pagni, M., Bucher, P., Hulo, N., Sigrist, C. J. A., Hofmann, K., and Bairoch, A., The PROSITE database, its status in 2002. Nucl. Acids Res., 30, 235–238 (2002).
  • 24) Nakai, K., and Kanehisa, M., Expert system for predicting protein localization sites in gram-negative bacteria. Proteins, 11, 95–110 (1991).
  • 25) Hirokawa, T., Boon-Chieng, S., and Mitaku, S., SOSUI: classification and secondary structure prediction system for membrane proteins. Bioinformatics, 14, 378–379 (1998).
  • 26) Thompson, J. D., Higgins, D. G., and Gibson, T. J., CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucl. Acids Res., 22, 4673–4680 (1994).
  • 27) Laemmli, U. K., Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature, 227, 680–685 (1970).
  • 28) Reid, M. F., and Fewson, C. A., Molecular characterization of microbial alcohol dehydrogenases. Crit. Rev. Microbiol., 20, 13–56 (1994).
  • 29) Saito, Y., Ishii, Y., Hayashi, H., Imao, Y., Akashi, T., Yoshikawa, K., Noguchi, Y., Soeda, S., Yoshida, M., Niwa, M., Hosoda, J., and Shimomura, K., Cloning of genes coding for L-sorbose and L-sorbosone dehydrogenases from Gluconobacter oxydans and microbial production of 2-keto-L-gulonate, a precursor of L-ascorbic acid, in a recombinant G. oxydans strain. Appl. Environ. Microbiol., 63, 454–460 (1997).
  • 30) Lamark, T., Kaasen, I., Eshoo, M. W., Falkenberg, P., McDougall, J., and Strøm, A. R., DNA sequence and analysis of the bet genes encoding the osmoregulatory choline-glycine betaine pathway of Escherichia coli. Mol. Microbiol., 5, 1049–1064 (1991).
  • 31) Wierenga, R. K., Terpstra, P., and Hol, W. G. J., Prediction of the occurrence of the ADP-binding βαβ-fold in proteins, using an amino acid sequence fingerprint. J. Mol. Biol., 187, 101–107 (1986).
  • 32) van Beilen, J. B., Panke, S., Lucchini, S., Franchini, A. G., Röthlisberger, M., and Witholt, B., Analysis of Pseudomonas putida alkane-degradation gene clusters and flanking insertion sequences: evolution and regulation of the alk genes. Microbiology, 147, 1621–1630 (2001).
  • 33) Sato, H., Shibata, A., Yoshikawa, H., and Tamura, H., Biodegradation mechanisms of non-ionic surfactants evaluated by MALDI-MS. J. Mass Spectrom. Soc. Jpn. (in Japanese), 51, 415–420 (2003).
  • 34) Kostichka, K., Thomas, S. M., Gibson, K. J., Nagarajan, V., and Cheng, Q., Cloning and characterization of a gene cluster for cyclododecanone oxidation in Rhodococcus ruber SC1. J. Bacteriol., 183, 6478–6486 (2001).

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