- 1) Boeke, J. D., The unusual phylogenetic distribution of retrotransposons: a hypothesis. Genome Res., 13, 1975–1983 (2003).
- 2) Malik, H. S., and Eickbush, T. H., Phylogenetic analysis of ribonuclease H domains suggests a late, chimeric origin of LTR retrotransposable elements and retroviruses. Genome Res., 11, 1187–1197 (2001).
- 3) McClure, M. A., Evolution of retroposons by acquisition or deletion of retrovirus-like genes. Mol. Biol. Evol., 8, 835–856 (1991).
- 4) Kumar, A., and Bennetzen, J. L., Plant retrotransposons. Annu. Rev. Genet., 33, 479–532 (1999).
- 5) Hirochika, H., and Hirochika, R., Ty1-copia group retrotransposons as ubiquitous components of plant genomes. Jpn. J. Genet., 68, 35–46 (1993).
- 6) Kumekawa, N., Ohtsubo, E., and Ohtsubo, H., Identification and phylogenetic analysis of gypsy-type retrotransposons in the plant kingdom. Genes Genet. Syst., 74, 299–307 (1999).
- 7) Matsuzaki, M., Misumi, O., Shin-I, T., Maruyama, S., Takahara, M., Miyagishima, S. Y., Mori, T., Nishida, K., Yagisawa, F., Nishida, K., Yoshida, Y., Nishimura, Y., Nakao, S., Kobayashi, T., Momoyama, Y., Higashiyama, T., Minoda, A., Sano, M., Nomoto, H., Oishi, K., Hayashi, H., Ohta, F., Nishizaka, S., Haga, S., Miura, S., Morishita, T., Kabeya, Y., Terasawa, K., Suzuki, Y., Ishii, Y., Asakawa, S., Takano, H., Ohta, N., Kuroiwa, H., Tanaka, K., Shimizu, N., Sugano, S., Sato, N., Nozaki, H., Ogasawara, N., Kohara, Y., and Kuroiwa, T., Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D. Nature, 428, 653–657 (2004).
- 8) Nikaido, I., Asamizu, E., Nakajima, M., Nakamura, Y., Saga, N., and Tabata, S., Generation of 10,154 expressed sequence tags from a leafy gametophyte of a marine red alga, Porphyra yezoensis. DNA Res., 7, 223–227 (2000).
- 9) Asamizu, E., Nakajima, M., Kitade, Y., Saga, N., Nakamura, Y., and Tabata, S., Comparison of RNA expression profiles between the two generations of Porphyra yezoensis (Rhodophyta), based on expressed sequence tag frequency analysis. J. Phycol., 39, 923–930 (2003).
- 10) Apt, K. E., and Grossman, A. R., Characterization and transcript analysis of the major phycobiliprotein subunit genes from Aglaothamnion neglectum (Rhodophyta). Plant Mol. Biol., 21, 27–38 (1993).
- 11) Vershinin, A. V., Druka, A., Alkhimova, A. G., Kleinhofs, A., and Heslop-Harrison, J. S., LINEs and gypsy-like retrotransposons in Hordeum species. Plant Mol. Biol., 49, 1–14 (2002).
- 12) Feuerbach, F., and Lucas, H., The protease and reverse transcriptase of the tobacco LTR retrotransposon Tnt1 are enzymatically active when expressed in Escherichia coli. Plant Mol. Biol., 46, 481–489 (2001).
- 13) Xiong, Y., and Eickbush, T. H., Origin and evolution of retroelements based upon their reverse transcriptase sequences. EMBO J., 9, 3353–3362 (1990).
- 14) Burke, W. D., Malik, H. S., Rich, S. M., and Eickbush, T. H., Ancient lineages of non-LTR retrotransposons in the primitive eukaryote, Giardia lamblia. Mol. Biol. Evol., 19, 619–630 (2002).
- 15) Burger, G., Saint-Louis, D., Gray, M. W., and Lang, B. F., Complete sequence of the mitochondrial DNA of the red alga Porphyra purpurea: cyanobacterial introns and shared ancestry of red and green algae. Plant Cell, 11, 1675–1694 (1999).
- 16) Suzuki, T., Takio, S., and Satoh, T., Light-dependent expression in liverwort cells of chlL/N and chlB identified as chloroplast genes involved in chlorophyll synthesis in the dark. J. Plant Physiol., 152, 31–37 (1998).
- 17) Thompson, J. D., Higgins, D. G., and Gibson, T. J., CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucl. Acids Res., 22, 4673–4680 (1994).
- 18) Page, R. D., TreeView: an application to display phylogenetic trees on personal computers. Comput. Appl. Biosci., 12, 357–358 (1996).
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Reverse Transcriptase-Like Sequences Related to Retrotransposon in a Red Alga, Porphyra yezoensis
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