345
Views
22
CrossRef citations to date
0
Altmetric
Original Articles

Nucleotide Sequences and Organization of the Genes for Carotovoricin (Ctv) from Erwinia carotovora Indicate That Ctv Evolved from the Same Ancestor as Salmonella typhi Prophage

, , , , , & show all
Pages 2236-2247 | Received 03 Apr 2006, Accepted 25 May 2006, Published online: 22 May 2014

  • 1) Barras, F., Gijsegem, V. F., and Chatterjee, A. K., Extracellular enzymes and pathogenesis of soft-rot Erwinia. Annu. Rev. Phytopath., 32, 201–234 (1994).
  • 2) Homan, Y., and Peron, Y., Les prooriete antagonistes reciproques parmi las Erwinia: discussion de la position taxonomique de ce gerne. C. R. Acad. Sci., 253, 913–915 (1961).
  • 3) Kamimiya, S., Izaki, K., and Takahashi, H., A new pectolytic enzyme in Erwinia aroideae formed in the presence of nalidixic acid. Agric. Biol. Chem., 36, 2367–2372 (1977).
  • 4) Tomizawa, H., and Takahashi, H., Stimulation of pectolytic enzyme formation of Erwinia aroideae by nalidixic acid, mitomycin C and bleomycin. Agric. Biol. Chem., 35, 191–200 (1971).
  • 5) Itoh, Y., Izaki, K., and Takahashi, H., Purification and characterization of a bacteriocin from Erwinia carotovora. J. Gen. Appl. Microbiol., 24, 27–39 (1978).
  • 6) Itoh, Y., Izaki, K., and Takahashi, H., Simultaneous synthesis of pectin lyase and carotovoricin induced by mitomycin C, nalidixic acid or ultraviolet light irradiation in Erwinia carotovora. Agric. Biol. Chem., 44, 1135–1140 (1980).
  • 7) Nguyen, H. A., Tomita, T., Hirota, M., Sato, T., and Kamio, Y., A simple purification method and morphology and component analyses for carotovoricin Er, a phage-tail-like bacteriocin from the plant pathogen Erwinia carotovora Er. Biosci. Biotechnol. Biochem., 63, 1360–1369 (1999).
  • 8) Chuang, D. Y., Kyeremen, A. G., Gunji, Y., Takahara, Y., Ehara, Y., and Kikumoto, T., Identification and cloning of an Erwinia carotovora subsp. carotovora bacteriocin regulator gene by insertional mutagenesis. J. Bacteriol., 181, 1953–1957 (1999).
  • 9) Nguyen, H. A., Tomita, T., Hirota, M., Kaneko, J., Hayashi, T., and Kamio, Y., A DNA inversion in the tail fiber gene alters the host range specificity of carotovoricin Er, a phage-tail-like bacteriocin of phytopathogenic Erwinia carotovora subsp. carotovora Er. J. Bacteriol., 183, 6274–6282 (2001).
  • 10) Nakayama, K., Takashima, K., Ishihara, H., Shinomiya, T., Kageyama, M., Kanaya, S., Ohnishi, M., Murata, T., Mori, H., and Hayashi, T., The R-type pyocin of Pseudomonas aeruginosa is related to P2 phage, and the F-type is related to lambda phage. Mol. Microbiol., 38, 213–231 (2000).
  • 11) Nguyen, H. A., Kaneko, J., and Kamio, Y., Temperature-dependent production of carotovoricin Er and pectin lyase in phytopathogenic Erwinia carotovora subsp, carotpvora Er. Biosci. Biotechnol. Biochem., 66, 444–447 (2002).
  • 12) Sambrook, J., Fritsch, E. F., and Maniatis, T., “Molecular Cloning, a Laboratory Manual” 2nd ed., Cold Spring Harbor Laboratory, Cold Spring Harbor (1989).
  • 13) Letoffe, S., Delepelaire, P., and Wandersman, C., Protease secretion by Erwinia chrysanthemi: the specific secretion functions are analogous to those of Escherichia coli alpha-haemolysin. EMBO J., 9, 1375–1382 (1990).
  • 14) Lewis, L. K., Jenkins, M. E., and Mount, D. W., Isolation of DNA damage-inducible promoters in Escherichia coli: regulation of polB (dinA), dinG, and dinH by LexA repressor. J. Bacteriol., 174, 3377–3385 (1992).
  • 15) Lewis, L. K., and Mount, D. W., Interaction of LexA repressor with the asymmetric dinG operator and complete nucleotide sequence of the gene. J. Bacteriol., 174, 5110–5116 (1992).
  • 16) Heidelberg, J. F., Eisen, J. A., Nelson, W. C., Clayton, R. A., Gwinn, M. L., Dodson, R. J., Haft, D. H., Hickey, E. K., Peterson, J. D., Umayam, L., Gill, S. R., Nelson, K. E., Read, T. D., Tettelin, H., Richardson, D., Ermolaeva, M. D., Vamathevan, J., Bass, S., Qin, H., Dragoi, I., Sellers, P., McDonald, L., Utterback, T., Fleishmann, R. D., Nierman, W. C., White, O., Salzberg, S. L., Smith, H. O., Colwell, R. R., Mekalanos, J. J., Venter, J. C., and Fraser, C. M., DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae. Nature, 406, 477–483 (2000).
  • 17) Perna, N. T., Plunkett III, G., Burland, V., Mau, B., Glasner, J. D., Rose, D. J., Mayhew, G. F., Evans, P. S., Gregor, J., Kirkpatrick, H. A., Posfai, G., Hackett, J., Klink, S., Boutin, A., Shao, Y., Miller, L., Grotbeck, E. J., Davis, N. W., Lim, A., Dimalanta, E. T., Potamousis, K. D., Apodaca, J., Anantharaman, T. S., Lin, J., Yen, G., Schwartz, D. C., Welch, R. A., and Blattner, F. R., Genome sequence of enterohaemorrhagic Escherichia coli O157:H7. Nature, 409, 529–533 (2001).
  • 18) Parkhill, J., Dougan, G., James, K. D., Thomson, N. R., Pickard, D., Wain, J., Churcher, C., Mungall, K. L., Bentley, S. D., Holden, M. T., Sebaihia, M., Baker, S., Basham, D., Brooks, K., Chillingworth, T., Connerton, P., Cronin, A., Davis, P., Davies, R. M., Dowd, L., White, N., Farrar, J., Feltwell, T., Hamlin, N., Haque, A., Hien, T. T., Holroyd, S., Jagels, K., Krogh, A., Larsen, T. S., Leather, S., Moule, S., O’Gaora, P., Parry, C., Quail, M., Rutherford, K., Simmonds, M., Skelton, J., Stevens, K., Whitehead, S., and Barrell, B. G., Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18. Nature, 413, 848–852 (2001).
  • 19) McClelland, M., Sanderson, K. E., Spieth, J., Clifton, S. W., Latreille, P., Courtney, L., Porwollik, S., Ali, J., Dante, M., Du, F., Hou, S., Layman, D., Leonard, S., Nguyen, C., Scott, K., Holmes, A., Grewal, N., Mulvaney, E., Ryan, E., Sun, H., Florea, L., Miller, W., Stoneking, T., Nhan, M., Waterston, R., and Wilson, R. K., Complete genome sequence of Salmonella enterica serovar Typhimurium LT2. Nature, 413, 852–856 (2001).
  • 20) Young, R., Bacteriophage lysis: mechanism and regulation. Microbial. Rev., 56, 430–481 (1992).
  • 21) Engel, H., Kazemier, B., and Keck, W., Murein-metabolizing enzymes from Escherichia coli: sequence analysis and controlled overexpression of the slt gene, which encodes the soluble lytic transglycosidase. J. Bacteriol., 173, 6773–6782 (1991).
  • 22) Braid, M. D., Silhavy, J. L., Kitts, C. L., Cano, R. J., and Howe, M. M., Complete genomic sequence of bacteriophage B3, a Mu-like phage of Pseudomonas aeruginosa. J. Bacteriol., 186, 6560–6574 (2004).
  • 23) Nakayama, K., Kanaya, S., Ohnishi, M., Terawaki, Y., and Hayashi, T., The complete nucleotide sequence of phi CTX, a cytotoxin-converting phage of Pseudomonas aeruginosa: implications for phage evolution and horizontal gene transfer via bacteriophages. Mol. Microbiol., 31, 399–419 (1999).
  • 24) Haggard-Ljungquist, E., Halling, A., and Calender, R., DNA sequence of the tail fiber genes of bacteriophage P2: evidence for horizontal transfer of tail fiber genes among unrelated bacteriophages. J. Bacteriol., 174, 1462–1477 (1992).
  • 25) Liu, Y., Cui, Y., Mukherjee, A., and Chatterjee, A. K., Activation of the Erwinia carotovore subsp. carotovora pectin lyase sturycturak gene pnlA: a role of RdgB. Microbiol., 143, 705–712 (1997).
  • 26) Nishida, T., Suzuki, T., Ito, K., Kamio, Y., and Izaki, K., Cloning and expression of pectin lyase gene from Erwinia carotovora in Escherichia coli. Biochem. Biophys. Res. Commun., 168, 801–808 (1990).
  • 27) Liu, Y., Chatterjee, A., and Chatterjee, A. K., Nucleotide sequence, organization and expression of rdgA and rdgB genes that regulate pectin lyase production in the plant pathogenic bacterium Erwinia carotovora subsp. Carotovora in response to DNA-damagiong agents. Mol. Microbiol., 14, 999–1010 (1994).
  • 28) Sandmeier, H., Acquisition and rearrangement of sequence motifs in the evolution of bacteriophage tailfibres. Mol. Microbiol., 12, 343–350 (1994).
  • 29) Juhala, R. J., Ford, M. E., Duda, R. L., Youlton, A., Hatfull, G. F., and Hendrix, R. W., Genomic sequences of bacteriophages HK97 and HK022: pervasive genetic mosaicism in the lambdoid bacteriophages. J. Mol. Biol., 299, 27–51 (2000).
  • 30) Ishii, S., Nishi, Y., and Egami, F., The fine structure of a pyocin. J. Mol. Biol., 13, 428–431 (1965).
  • 31) Kageyama, M., Studies of a pyocin. I. Physical and chemical properties. J. Biochem., 55, 49–53 (1964).
  • 32) Bell, K. S., Sebaihia, M., Pritchard, L., Holden, M. T., Hyman, L. J., Holeva, M. C., Thomson, N. R., Bentley, S. D., Churcher, L. J., Mungall, K., Atkin, R., Bason, N., Brooks, K., Chillingworth, T., Clark, K., Doggett, J., Fraser, A., Hance, Z., Hauser, H., Jagels, K., Moule, S., Norbertczak, H., Ormond, D., Price, C., Quail, M. A., Sanders, M., Walker, D., Whitehead, S., Salmond, G. P., Birch, P. R., Parkhill, J., and Toth, I. K., Genome sequence of the enterobacterial phytopathogen Erwinia carotovora subsp. atroseptica and characterization of virulence factors. Proc. Natl. Acad. Sci. USA, 101, 11105–11110 (2004).
  • 33) McGillivary, G., Tomaras, A. P., Rhodes, E. R., and Actis, L. A., Cloning and sequencing of a genomic island found in the Brazilian purpuric fever clone of Haemopjillus influenzae biogroup aegyptis. Infect. Immun., 73, 1927–1938 (2005).

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.