- 1) Anderson, S., de Bruijn, M. H., Coulson, A. R., Eperon, I. C., Sanger, F., and Young, I. G., Complete sequence of bovine mitochondrial DNA. Conserved features of the mammalian mitochondrial genome. J. Mol. Biol., 156, 683-717 (1982).
- 2) Fleischmann, R. D. Adams, M. D. et al., Whole genome random sequencing and assembly of Haemophilus influenzae Rd. Science, 269, 496-512 (1995).
- 3) Takami, H. and Horikoshi, K., Reidentification of facultatively alkaliphilic Bacillus sp. C-125 to Bacillus halodurans. Biosci. Biotechnol. Biochem., 63, 943-945 (1999).
- 4) Takami, H., Nakasone, K., Hirama, C., Takaki, Y., Masui, N., Fuji, F., Nakamura, Y., and Inoue, A., An improved physical and genetic map of the genome of alkaliphilic Bacillus sp. C-125. Extremophiles, 3, 21-28 (1999).
- 5) Ewing, B., Hillier, L., Wendl, M.C., and Green, P., Base-calling of automated sequencer traces using Phred. I. Accuracy assessment. Genome Res., 8, 175-185 (1998).
- 6) Ewing, B. and Green, P., Base-calling of automated sequencer traces using Phred. II. Error probabilities. Genome Res., 8, 186-194 (1998).
- 7) Smith, T. F. and Waterman, M. S., Identification of common molecular subsequences. J. Mol. Biol., 147, 195-197 (1981).
- 8) Gotoh, O., An improved algorithm for matching biological sequences. J. Mol. Biol., 162, 705-708 (1982).
- 9) Altschul, S. F., Gish, W., Miller, W., Myers, E. W., and Lipman, D. J., Basic local alignment search tool. J. Mol. Biol., 215, 403-410 (1990).
- 10) Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D. J., Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402 (1997).
- 11) Lipman, D. J. and Pearson, W. R., Rapid and sensitive protein similarity searches. Science, 227, 1435-1441 (1985).
- 12) Wilbur, W. J. and Lipman, D. J., Rapid similarity searches of nucleic acid and protein data banks. Proc. Natl. Acad. Sci. USA, 80, 726-730 (1983).
- 13) Takami, H., Nakasone, K., Ogasawara, N., Hirama, C., Nakamura, Y., Masui, N., Fuji, F., Takaki, Y., Inoue, A., and Horikoshi, K., Sequencing of three lambda clones from the genome of alkaliphilic Bacillus sp. strain C-125. Extremophiles, 3, 29-34 (1999).
- 14) Dear, S. and Staden, R., A standard file format for data from DNA sequencing instruments. DNA Seq., 3, 107-110. (1992).
- 15) Gordon, D., Abajian, C., and Green, P., Consed: a graphical tool for sequence finishing. Genome Res., 8, 195-202 (1998).
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An Automated System for Genome Analysis to Support Microbial Whole-genome Shotgun Sequencing
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