- 1) Watase, H., and Takenouchi, T., Bacterial flora in the digestive tract of cattle. I. Comparison of nonselective culture medium and changes in fecal bacterial flora with age. Natl. Inst. Anim. Health. Q. (Tokyo), 18, 143–154 (1978).
- 2) Kimura, N., Yoshikane, M., Kobayashi, A., and Mitsuoka, T., An application of dried Bifidobacteria preparation to scouring animals. Bifidobacteria Microflora, 2, 41–55 (1983).
- 3) O’Sullivan, D. J., Methods for analysis of the intestinal microflora. In “Probiotics: A Critical Review”, ed. Tannock, G. W., Horizon Scientific Press, Wymondham, pp. 23–44 (1999).
- 4) Clement, B. G., and Kitts, C. L., Isolation PCR-Quality DNA from human feces with a soil DNA kit. BioTechniques, 28, 640–646 (2000).
- 5) Lane, D. J., 16S/23S rRNA sequencing. In “Nucleic Acid Techniques in Bacterial Systematics”, eds. Stackebrandt, E., and Goodfellow, M., John Wiley and Sons, New York, pp. 115–175 (1991).
- 6) Altschul, S. F., Gish, W., Miller, W., Myers, E. W., and Lipman, D. J., Basic local alignment search tool. J. Mol. Biol., 215, 403–410 (1990).
- 7) Cole, J. R., Chai, B., Marsh, T. L., Farris, R. J., Wang, Q., Kulam, S. A., Chandra, S., McGarrell, D. M., Schmidt, T. M., Garrity, G. M., and Tiedje, J. M., The ribosomal database project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy. Nucl. Acids Res., 31, 442–443 (2003).
- 8) Thompson, J. D., Higgins, D. G., and Gibson, T. J., CLUSTA W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucl. Acids Res., 22, 4673–4680 (1994).
- 9) Saitou, N., and Nei, M., The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol., 4, 406–425 (1987).
- 10) Stackebrandt, E., and Goebel, B. M., Taxonomic notice: A place for DNA–DNA reassociation and 16S rDNA sequence analysis in the present species definition in bacteriology. Int. J. Syst. Bacteriol., 44, 846–849 (1994).
- 11) Leser, T. D., Amenuvor, J. Z., Jensen, T. K., Lindecrona, R. H., Boye, M., and Moller, K., Culture-independent analysis of gut bacteria: the pig gastrointestinal tract microbiota revisited. Appl. Environ. Microbiol., 68, 673–690 (2002).
- 12) Bernhard, A. E., and Field, K. G., Identification of nonpoint sources of fecal pollution in coastal waters by using host-specific 16S ribosomal DNA genetic markers from fecal anaerobes. Appl. Environ. Microbiol., 66, 1587–1594 (2000).
- 13) Tajima, K., Arai, S., Ogata, K., Nagamine, T., Matsui, H., Nakamura, M., Aminov, R. I., and Benno, Y., Rumen bacterial community transition during adaptation to high-grain diet. Anareobe, 6, 273–284 (2000).
Bioscience, Biotechnology, and Biochemistry
Volume 69, 2005 - Issue 9