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Review

How to implement grid technology in tissue-based diagnosis: diagnostic surgical pathology

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Pages 323-337 | Published online: 11 Mar 2008

Bibliography

  • Kayser G, Radziszowski D, Bzdyl P, Sommer R, Kayser K. Theory and implementation of an electronic, automated measurement system for images obtained from immunohistochemically stained slides. Anal Quant Cytol Histol 2006;28(1):27-38
  • Kayser K. Introducing diagnostic pathology. Diagn Pathol 2006;1(1):1
  • Kayser K, Molnar B, Weinstein R. Virtual Microscopy: Fundamentals, Applications, Perspectives of Electronic Tissue-based Diagnosis. Berlin: VSV Interdisciplinary Medical Publishing; 2006. p. 206
  • Kayser K, Radziszowski D, Bzdyl P, Sommer R, Kayser G. Digitized pathology: theory and experiences in automated tissue-based virtual diagnosis. Rom J Morphol Embryol 2006;47(1):21-8
  • Kayser K, Radziszowski D, Bzdyl P, Sommer R, Kayser G. Towards an automated virtual slide screening: theoretical considerations and practical experiences of automated tissue-based virtual diagnosis to be implemented in the Internet. Diagn Pathol 2006;1:10
  • Apicella C, Dowty J, Dite G, et al. Validation study of the lambda model for predicting the BRCA1 or BRCA2 mutation carrier status of North American Ashkenazi Jewish women. Clin Genet 2007;72(2):87-97
  • Cai T, Margallo E, Nesi G, Giubilei G, Rizzo M, Bartoletti R. Prognostic value of static cytometry in transitional cell carcinoma of the bladder: recurrence rate and survival in a group of patients at 10 years follow-up. Oncol Rep 2006;15(1):213-9
  • Castro P, Eknaes M, Teixeira MR, et al. Adenomas and follicular carcinomas of the thyroid display two major patterns of chromosomal changes. J Pathol 2005;206(3):305-11
  • Gralow JR. Breast cancer 2004: progress and promise on the clinical front. Phys Med 2006;21(Suppl 1):2
  • Kwon JS, Lenehan J, Carey M, Ainsworth P. Prolonged survival among women with BRCA germline mutations and advanced endometrial cancer: a case series. Int J Gynecol Cancer 2007;In Press
  • Lambros MB, Natrajan R, Reis-Filho JS. Chromogenic and fluorescent in situ hybridization in breast cancer. Hum Pathol 2007;38(8):1105-22
  • Mattila R, Alanen K, Syrjanen S. DNA content as a prognostic marker of oral lichen planus with a risk of cancer development. Anal Quant Cytol Histol 2004;26(5):278-84
  • Ohadi M, Totonchi M, Maguire P, et al. Mutation analysis of the DBC2 gene in sporadic and familial breast cancer. Acta Oncol 2007;46(6):770-2
  • Oliveira PA, Palmeira C, Colaco A, de la Cruz LF, Lopes C. DNA content analysis, expression of Ki-67 and p53 in rat urothelial lesions induced by N-butyl-N-(4-hydroxybutyl) nitrosamine and treated with mitomycin C and bacillus Calmette-Guerin. Anticancer Res 2006;26(4B):2995-3004
  • Sidoni A, Cavaliere A, D'Amico GA, Brachelente G, Bucciarelli E. Biopathological significance of single cell DNA aneuploidy measured by static cytometry in breast cancer. Breast 2001;10(4):325-9
  • Akiyama T, Teranishi Y, Nozaki K, et al. Scientific Grid activities and PKI deployment in the Cybermedia Center, Osaka University. J Clin Monit Comput 2005;19(4-5):279-94
  • Crnic I, Christofori G. Novel technologies and recent advances in metastasis research. Int J Dev Biol 2004;48(5-6):573-81
  • Durand M. Structure of optimal transport networks subject to a global constraint. Phys Rev Lett 2007;98(8):088701
  • Kayser G, Gerlach U, Walch A, et al. Numerical and structural centrosome aberrations are an early and stable event in the adenoma-carcinoma sequence of colorectal carcinomas. Virchows Arch 2005;447(1):61-5
  • Kayser K. Diagnostic pathology – editorial. Diagn Pathol 2007;2:2
  • Bernroider G. Recognition and classification of structure by means of stereological methods in neurobiology. J Microsc 1976;107(3):287-95
  • Collan Y. Stereology in diagnostic pathology. Pathologica 1997;89(4):462-6
  • Mattfeldt T, Gottfried H, Schmidt V, Kestler HA. Classification of spatial textures in benign and cancerous glandular tissues by stereology and stochastic geometry using artificial neural networks. J Microsc 2000;198(Pt 2):143-58
  • Ficsor L, Varga V, Berczi L, et al. Automated virtual microscopy of gastric biopsies. Cytometry B Clin Cytom 2006;70(6):423-31
  • Wu ML, Varga VS, Kamaras V, et al. Three-dimensional virtual microscopy of colorectal biopsies. Arch Pathol Lab Med 2005;129(4):507-10
  • Dee FR. Virtual microscopy for comparative pathology. Toxicol Pathol 2006;34(7):966-7
  • Isabelle M, Teodorovic I, Oosterhuis JW, et al. Virtual microscopy in virtual tumor banking. Adv Exp Med Biol 2006;587:75-86
  • Jin B, Ai Z, Rasmussen M. Visualization of large-scale confocal data using computer cluster. Stud Health Technol Inform 2007;125:206-8
  • Mikula S, Trotts I, Stone JM, Jones EG. Internet-enabled high-resolution brain mapping and virtual microscopy. Neuroimage 2007;35(1):9-15
  • Schrader T, Niepage S, Leuthold T, et al. The diagnostic path, a useful visualisation tool in virtual microscopy. Diagn Pathol 2006;1:40
  • Scoville SA, Buskirk TD. Traditional and virtual microscopy compared experimentally in a classroom setting. Clin Anat 2007;20(5):565-70
  • Gortler J, Berghoff M, Kayser G, Kayser K. Grid technology in tissue-based diagnosis: fundamentals and potential developments. Diagn Pathol 2006;1:23
  • Buyya R, Murshed M. GridSim: a toolkit for the modeling and simulation of distributed resource management and scheduling for Grid computing. Concurrency and Computation: Practice and Experience; 2002;14(13-15):1175-220
  • Liu BJ, Zhou MZ, Documet J. Utilizing data grid architecture for the backup and recovery of clinical image data. Comput Med Imaging Graph 2005;29(2-3):95-102
  • Nakagawa S, Kosaka T, Date S, Shimojo S, Tonoike M. A grid computing infrastructure for MEG data analysis. Neurol Clin Neurophysiol 2004;2004:36
  • Sulakhe D, Rodriguez A, D'Souza M, et al. GNARE: automated system for high-throughput genome analysis with grid computational backend. J Clin Monit Comput 2005;19(4-5):361-9
  • Aloisio G, Barba MC, Blasi E, Cafaro M, Fiore S, Mirto M. A web service-based Grid portal for Edgebreaker compression. Methods Inf Med 2005;44(2):233-8
  • Andronico G, Barbera R, Falzone A, Lo Re G, Pulvirenti A, Rodolico A. The GENIUS web portal – an easy way to access the Grid. Methods Inf Med 2005;44(2):215-20
  • Aparicio G, Gotz S, Conesa A, et al. Blast2GO goes grid: developing a grid-enabled prototype for functional genomics analysis. Stud Health Technol Inform 2006;120:194-204
  • Cannataro M, Congiusta A, Pugliese A, Talia D, Trunfio P. Distributed data mining on grids: services, tools, and applications. IEEE Trans Syst Man Cybern B Cybern 2004;34(6):2451-65
  • Cannataro M, Cuda G, Veltri P. Modeling and designing a proteomics application on PROTEUS. Methods Inf Med 2005;44(2):221-6
  • Grant PM, Starr C, Overbye TJ. A power grid for the hydrogen economy. Sci Am 2006;295(1):76-83
  • Jiang Z, Lu F, Zhang J. Using grid techniques for drug target identification. J Drug Target 2006;14(9):623-31
  • Kido Y, Date S, Takeda S, et al. Architecture of a grid-enabled research platform with location-transparency for bioinformatics. Genome Inform 2004;15(2):3-12
  • Loewe L. Global computing for bioinformatics. Brief Bioinform 2002;3(4):377-88
  • Stefanescu R, Pennec X, Ayache N. A Grid service for the interactive use of a parallel non-rigid registration algorithm of medical images. Methods Inf Med 2005;44(2):239-43
  • Trombetti GA, Bonnal RJ, Rizzi E, De Bellis G, Milanesi L. Data handling strategies for high throughput pyrosequencers. BMC Bioinformatics 2007;8(Suppl 1):S22
  • Oliveira IC, Oliveira JL, Sanchez JP, et al. Grid requirements for the integration of biomedical information resources for health applications. Methods Inf Med 2005;44(2):161-7
  • Johnston B, Smith V. Exploring students' experience of training for counselling skills and the impact on practice. Int J Palliat Nurs 2005;11(8):410-8
  • Hanauer DA, Rhodes DR, Sinha-Kumar C, Chinnaiyan AM. Bioinformatics approaches in the study of cancer. Curr Mol Med 2007;7(1):133-41
  • Amstutz HC, Ouzounian T, Grauer D, Flink C, Kirkpatrick J, Bassett L. The grid radiograph. A simple technique for consistent high-resolution visualization of the hip. J Bone Joint Surg Am 1986;68(7):1052-6
  • Bajcsy P. Gridline: automatic grid alignment in DNA microarray scans. IEEE Trans Image Process 2004;13(1):15-25
  • Cerello P, Bagnasco S, Bottigli U, et al. GPCALMA: a Grid-based tool for mammographic screening. Methods Inf Med 2005;44(2):244-8
  • Espert IB, Garcaa VH, Quilis JD. An OGSA Middleware for managing medical images using ontologies. J Clin Monit Comput 2005;19(4-5):295-305
  • Jacob BG, Muturi EJ, Funes JE, et al. A grid-based infrastructure for ecological forecasting of rice land Anopheles arabiensis aquatic larval habitats. Malar J 2006;5:91
  • Neitzel U. Grids or air gaps for scatter reduction in digital radiography: a model calculation. Med Phys 1992;19(2):475-81
  • Tebbutt SJ, Opushnyev IV, Tripp BW, Kassamali AM, Alexander WL, Andersen MI. SNP Chart: an integrated platform for visualization and interpretation of microarray genotyping data. Bioinformatics 2005;21(1):124-7
  • Germain-Renaud C, Osorio A, Texier R. Interactive volume reconstruction and measurement on the Grid. Methods Inf Med 2005;44(2):227-32
  • Casavova H, Dongarra J. NetSolve: a network server for solving computational science problems. Int J Supercomp Appl High Perform Computing 1997;11(3)
  • Kayser K, Beyer M, Blum S, Kayser G. Recent developments and present status of telepathology. Anal Cell Pathol 2000;21(3-4):101-6
  • Kayser K, Fritz P, Drlicek M. Aspects of telepathology in routinary diagnostic work with specific emphasis on ISDN. Arch Anat Cytol Pathol 1995;43(4):216-8
  • Weinstein RS, Bhattacharyya A, Yu YP, et al. Pathology consultation services via the Arizona-International Telemedicine Network. Arch Anat Cytol Pathol 1995;43(4):219-26
  • Weinstein RS, Bloom KJ, Krupinski EA, Rozek LS. Human performance studies of the video microscopy component of a dynamic telepathology system. Zentralbl Pathol 1992;138(6):399-403
  • Weinstein RS, Bloom KJ, Rozek LS. Telepathology. Long-distance diagnosis. Am J Clin Pathol 1989;91(4 Suppl 1):S39-42
  • Weinstein RS, Descour MR, Liang C, et al. Telepathology overview: from concept to implementation. Hum Pathol 2001;32(12):1283-99
  • Foster I, Kesselman C. Globus: a metacomputing infrastructure toolkit. Int J Supercomputer Appl 1997;11(2):115-28
  • Grimshaw A, Wulf W. The Legion vision of a worldwide virtual computer. Commun ACM 1997;40(1):63-75
  • The Age-Related Eye Disease Study system for classifying age-related macular degeneration from stereoscopic color fundus photographs: the Age-Related Eye Disease Study Report Number 6. Am J Ophthalmol 2001;132(5):668-81
  • Johnson CA, Cioffi GA, Van Buskirk EM. Frequency doubling technology perimetry using a 24-2 stimulus presentation pattern. Optom Vis Sci 1999;76(8):571-81
  • Bagarinao E, Matsuo K, Tanaka Y, Sarmenta LF, Nakai T. Enabling on-demand real-time functional MRI analysis using grid technology. Methods Inf Med 2005;44(5):665-73
  • Brandan ME, Ruiz-Trejo C, Verdejo-Silva M, et al. Evaluation of equipment performance, patient dose, imaging quality, and diagnostic coincidence in five Mexico City mammography services. Arch Med Res 2004;35(1):24-30
  • Truong TN, Nayak M, Huynh HH, et al. Computational Science and Engineering Online (CSE-Online): a cyber-infrastructure for scientific computing. J Chem Inf Model 2006;46(3):971-84
  • Computational Science and Engineering Online. Available from: URL: cse-online.net [last accessed February 2008]
  • Pan TC, Gurcan MN, Langella SA, et al. Informatics in radiology: GridCAD: grid-based computer-aided detection system. Radiographics 2007;27(3):889-97
  • Blanchet C, Lefort V, Combet C, Deleage G. GPS@ bioinformatics portal: from network to EGEE grid. Stud Health Technol Inform 2006;120:187-93
  • Breton V, Medina R, Montagnat J. DataGrid, prototype of a biomedical grid. Methods Inf Med 2003;42(2):143-7
  • Konagaya A. Trends in life science grid: from computing grid to knowledge grid. BMC Bioinformatics 2006;7(Suppl 5):S10
  • Ortuso F, Langer T, Alcaro S. GBPM: GRID-based pharmacophore model: concept and application studies to protein-protein recognition. Bioinformatics 2006;22(12):1449-55
  • Ranganathan S, Subbiah S, Tan TW. APBioNet: the Asia-Pacific regional consortium for bioinformatics. Appl Bioinformatics 2002;1(2):101-5
  • Saltz J, Oster S, Hastings S, et al. caGrid: design and implementation of the core architecture of the cancer biomedical informatics grid. Bioinformatics 2006;22(15):1910-6
  • Sun Y, Zhao S, Yu H, Gao G, Luo J. ABCGrid: application for bioinformatics computing grid. Bioinformatics 2007;23(9):1175-7
  • Muller H, Pitkanen M, Zhou X, Depeursinge A, Iavindrasana J, Geissbuhler A. KnowARC: enabling Grid networks for the biomedical research community. Stud Health Technol Inform 2007;126:261-8
  • Fenner JW, Mehrem RA, Ganesan V, et al. Radiosurgery planning supported by the GEMSS grid. Stud Health Technol Inform 2005;112:190-7
  • Treuer H, Hoevels M, Luyken K, et al. Geometrical and dosimetrical characterization of the photon source using a micro-multileaf collimator for stereotactic radiosurgery. Phys Med Biol 2003;48(15):2307-19
  • Erberich SG, Silverstein JC, Chervenak A, Schuler R, Nelson MD, Kesselman C. Globus MEDICUS – Federation of DICOM Medical Imaging Devices into Healthcare Grids. Stud Health Technol Inform 2007;126:269-78
  • Germain C, Breton V, Clarysse P, et al. Grid-enabling medical image analysis. J Clin Monit Comput 2005;19(4-5):339-49
  • Rivers H, Poston B. Medical archiving: solutions for medical image management. Radiol Manage 2006;28(1):38-44
  • Vogl R. Telemedicine: chances and risks. Radiologe 2002;42(5):376-9
  • Boon ME, Ouwerkerk-Noordam E, van Leeuwen AW, Kok LP, van Haaften-Day C. How to improve cytologic screening for endocervical adenocarcinoma? Eur J Gynaecol Oncol 2002;23(6):481-5
  • Haroske G, Baak JP, Danielsen H, et al. Fourth updated ESACP consensus report on diagnostic DNA image cytometry. Anal Cell Pathol 2001;23(2):89-95
  • Haroske G, Meyer W, Oberholzer M, Bocking A, Kunze KD. Competence on demand in DNA image cytometry. Pathol Res Pract 2000;196(5):285-91
  • Kok MR, van Der Schouw YT, Boon ME, et al. Neural network-based screening (NNS) in cervical cytology: no need for the light microscope? Diagn Cytopathol 2001;24(6):426-34
  • Kunze KD, Boecking A, Haroske G, Kayser K, Meyer W, Oberholzer M. Remote quantitation in the framework of telepathology. Adv Clin Path 1998;2(2):141-3
  • Moonen PM, Peelen P, Kiemeney LA, Boon ME, Schalken JA, Witjes JA. Quantitative cytology on bladder wash versus voided urine: a comparison of results. Eur Urol 2006;49(6):1044-9; discussion 1049-50
  • van Ballegooijen M, Beck S, Boon ME, Boer R, Habbema JD. Rescreen effect in conventional and PAPNET screening: observed in a study using material enriched with positive smears. Acta Cytol 1998;42(5):1133-8
  • Goldmann T, Burgemeister R, Sauer U, et al. Enhanced molecular analyses by combination of the HOPE-technique and laser microdissection. Diagn Pathol 2006;1:2
  • Pires AR, Andreiuolo Fda M, de Souza SR. TMA for all: a new method for the construction of tissue microarrays without recipient paraffin block using custom-built needles. Diagn Pathol 2006;1:14
  • Conway CM, O'Shea D, O'Brien S, et al. The development and validation of the Virtual Tissue Matrix, a software application that facilitates the review of tissue microarrays on line. BMC Bioinformatics 2006;7:256
  • Dee FR, Lehman JM, Consoer D, Leaven T, Cohen MB. Implementation of virtual microscope slides in the annual pathobiology of cancer workshop laboratory. Hum Pathol 2003;34(5):430-6
  • Demichelis F, Della Mea V, Forti S, Dalla Palma P, Beltrami CA. Digital storage of glass slides for quality assurance in histopathology and cytopathology. J Telemed Telecare 2002;8(3):138-42
  • Dhar PK, Meng TC, Somani S, et al. Grid cellware: the first grid-enabled tool for modelling and simulating cellular processes. Bioinformatics 2005;21(7):1284-7
  • Fujita K, Crowley RS. The Virtual Slide Set - a curriculum development system for digital microscopy. AMIA Ann Symp Proc 2003;846
  • Gagnon M, Inhorn S, Hancock J, et al. Comparison of cytology proficiency testing: glass slides vs. virtual slides. Acta Cytol 2004;48(6):788-94
  • Helin HO, Lundin ME, Laakso M, Lundin J, Helin HJ, Isola J. Virtual microscopy in prostate histopathology: simultaneous viewing of biopsies stained sequentially with hematoxylin and eosin, and alpha-methylacyl-coenzyme A racemase/p63 immunohistochemistry. J Urol 2006;175(2):495-9
  • Romer DJ, Suster S. Use of virtual microscopy for didactic live-audience presentation in anatomic pathology. Ann Diagn Pathol 2003;7(1):67-72
  • Weinstein RS, Descour MR, Liang C, et al. An array microscope for ultrarapid virtual slide processing and telepathology. Design, fabrication, and validation study. Hum Pathol 2004;35(11):1303-14
  • Brauchli K, Christen H, Haroske G, Meyer W, Kunze KD, Oberholzer M. Telemicroscopy by the Internet revisited. J Pathol 2002;196(2):238-43
  • Brauchli K, Oberholzer M. Comparison of telepathology services. J Telemed Telecare 2004;10(5):307-8; author reply 308
  • Brauchli K, Oberholzer M. The iPath telemedicine platform. J Telemed Telecare 2005;11(Suppl 2):S3-7
  • Kayser K, Kayser G, Radziszowski D, Oehmann A. From telepathology to virtual pathology institution: the new world of digital pathology. Rom J Morphol Embryol 1999;45:3-9
  • Kayser K, Kayser G, Radziszowski D, Oehmann A. New developments in digital pathology: from telepathology to virtual pathology laboratory. Stud Health Technol Inform 2004;105:61-9
  • Oberholzer M, Christen H, Haroske G, et al. Modern telepathology: a distributed system with open standards. Curr Probl Dermatol 2003;32:102-14
  • Singh G, Bharathi S, Chervenak A, et al. A Metadata Catalog Service for Data Intensive Applications. Available from: URL: www.isi.edu/∼deelman/mcs_sc03.pdf [last accessed February 2008]
  • World Wide Grid (WWG). Available from: URL: www.buyya.com/ecogrid/wwg/ [last accessed February 2008]
  • Enabling Grids for E-sciencE. Available from: URL: www.eu-egee.org [last accessed February 2008]
  • TeraGrid homepage. Available from: URL: www.teraGrid.org/ [last accessed February 2008]
  • Virtual Laboratory: “Molecular Modelling for Drug Design” on the World Wide Grid. Available from: URL: www.buyya.com/vlab/ [last accessed February 2008]
  • GridwiseTech: The Scalability Expert. Available from: URL: www.gridwisetech.com/virolab [last accessed February 2008]
  • Mission of ViroLab. Available from: URL: www.virolab.org:8080/virolab/ [last accessed February 2008]
  • IBM – Grid medical archive solution from IBM. Available from: URL: www-03.ibm.com/industries/healthcare/doc/content/solution/1384520105.html?g_type=pspot
  • Bycast homepage. Available from: URL: www.bycast.com [last accessed February 2008]

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