References
- Arntzen , E. V. , Geist , D. R. and Dresel , P. E. 2006 . Effects of fluctuating river flow on groundwater–surface water mixing in the hyporheic zone of a regulated, large cobble bed river . River Research and Applications , 22 (8) : 937 – 946 .
- Bain , M. B. , Finn , J. T. and Booke , H. E. 1988 . Streamflow regulation and fish community structure . Ecology , 69 : 382 – 392 .
- Bauersfield , K. 1978 . The effect of daily flow fluctuations on spawning fall Chinook in the Columbia River , Olympia : Washington Department of Fisheries . Technical Report 38
- Bovee , K. D. 1982 . “ A guide to stream habitat analysis using the Instream Flow Incremental Methodology ” . In U.S. Fish and Wildlife Service FWS/OBS-82/26
- Bunt , C. M. , Cooke , S. J. , Katopodis , C. and McKinley , S. 1999 . Movement and summer habitat of brown trout (Salmo trutta) below a pulsed-discharge hydroelectric generating station . Regulated Rivers: Research and Management , 15 : 395 – 403 .
- Burrough , P. A. 1986 . Principles of geographic information systems for land resources assessment , New York : Oxford University Press .
- Church , M. A. , McLean , D. G. and Wolcott , J. F. 1987 . “ River bed gravels: sampling and analysis ” . In Sediment transport in gravel-bed rivers , Edited by: Thorne , C. R. , Bathurst , J. C. and Hey , R. D. 43 – 88 . Chichester, , UK : Wiley .
- Connor , E. J. and Pflug , D. E. 2004 . Changes in the distribution and density of pink, chum, and Chinook salmon spawning in the upper Skagit River in response to flow management measures . North American Journal of Fisheries Management , 24 : 835 – 852 .
- Crowder , D. W. and Diplas , P. 1997 . Sampling heterogeneous deposits in gravel-bed streams . Journal of Hydraulic Engineering , 123 : 1106 – 1117 .
- Curry , R. A. , Gehrels , J. , Noakes , D. L. G. and Swainson , R. 1994 . Effects of river flow fluctuations on groundwater discharge through brook trout, Salvelinus fontinalis, spawning and incubation habitats . Hydrobiologia , 277 : 121 – 134 .
- Cushman , R. M. 1985 . Review of ecological effects of rapidly varying flows downstream of hydroelectric facilities . North American Journal of Fisheries Management , 5 : 330 – 339 .
- Dauble , D. D. and Geist , D. R. 2000 . Comparison of main-stem spawning habitats for two populations of fall Chinook salmon in the Columbia River basin . Regulated Rivers: Research and Management , 16 : 345 – 361 .
- Dauble , D. D. , Hanrahan , T. P. , Geist , D. R. and Parsley , M. J. 2003 . Impacts of the Columbia River hydroelectric system on main-stem habitats of fall Chinook salmon . North American Journal of Fisheries Management , 23 : 641 – 659 .
- Dauble , D. D. and Watson , D. G. 1997 . Status of fall Chinook salmon populations in the mid-Columbia River, 1948–1992 . North American Journal of Fisheries Management , 17 : 283 – 300 .
- Deutsch , C. V. and Journel , A. G. 1998 . GSLIB: geostatistical software library and user's guide , New York : Oxford University Press .
- Geist , D. R. 2000 . Hyporheic discharge of river water into fall Chinook salmon (Oncorhynchus tshawytscha) spawning areas in the Hanford Reach, Columbia River . Canadian Journal of Fisheries and Aquatic Sciences , 57 : 1647 – 1656 .
- Geist , D. R. , Arntzen , E. V. , Bott , Y. , Hanrahan , T. P. , Murray , C. J. , Perkins , W. A. , Richmond , M. C. and Xie , Y. 2006 . “ Spawning habitat studies of Hanford Reach fall Chinook salmon (Oncorhynchus tshawytscha) ” . In Final report by the Pacific Northwest National Laboratory for the Bonneville Power Administration, PNNL 16093 Portland, Oregon
- Geist , D. R. , Hanrahan , T. P. , Arntzen , E. V. , McKinstry , C. , Murray , C. J. , Chien , Y. and McMichael , G. A. 2003 . “ Spawning habitat suitability in the Wanapum Dam tailrace and Priest Rapids pool ” . In Chinook salmon in the Priest Rapids Project, PNWD-3243. Final Report to Grant County Public Utility District, Ephrata, Washington Edited by: McMichael , G. A. Section 4.3 in
- Geist , D. R. , Arntzen , E. V. , Murray , C. J. , McGrath , K. E. , Bott , Y. and Hanrahan , T. P. 2008 . Influence of river level on temperature and hydraulic gradients in chum and fall Chinook salmon spawning areas downstream of Bonneville Dam . North American Journal of Fisheries Management , 27 : 30 – 41 .
- Geist , D. R. , Hanrahan , T. P. , Arntzen , E. V. , McMichael , G. A. , Murray , C. J. and Chien , Y. J. 2002 . Physicochemical characteristics of the hyporheic zone affect redd sites of chum salmon and fall Chinook salmon in the Columbia River . North American Journal of Fisheries Management , 22 : 1077 – 1085 .
- Geist , D. R. , Jones , J. , Murray , C. J. and Dauble , D. D. 2000 . Suitability criteria analyzed at the spatial scale of redd clusters improved estimates of fall Chinook salmon (Oncorhynchus tshawytscha) spawning habitat use in the Hanford Reach, Columbia River . Canadian Journal of Fisheries and Aquatic Sciences , 57 : 1636 – 1646 .
- Hamilton , R. and Buell , J. W. 1976 . Effects of modified hydrology on Campbell River salmonids , Vancouver : Canadian Department of the Environment . Technical Report PAC/T-76-20
- Heggenes , J. 1988 . Effects of short-term flow fluctuations on displacement of, and habitat use by, brown trout in a small stream . Transactions of the American Fisheries Society , 117 : 336 – 344 .
- Hosmer , D. W. and Lemeshow , S. 1989 . Applied logistic regression , New York : Wiley .
- Hunter , M. A. 1992 . Hydropower flow fluctuations and salmonids: a review of the biological effects, mechanical causes, and options for mitigation , Olympia : Washington Department of Fisheries . Technical Report 119
- Huntington , C. , Nehlsen , W. and Bowers , J. 1996 . A survey of healthy native stocks of anadromous salmonids in the Pacific Northwest and California . Fisheries , 21 (3) : 6 – 14 .
- Isaaks , E. H. and Srivastava , R. M. 1989 . An introduction to applied geostatistics , New York : Oxford University Press .
- Kondolf , G. M. 2000 . Assessing salmonid spawning gravel quality . Transactions of the American Fisheries Society , 129 : 262 – 281 .
- Lettenmaier , D. P. and Wood , E. F. 1993 . “ Hydrologic forecasting ” . In Handbook of hydrology , New York : McGraw Hill .
- McGill , J. R. , Tukey , J. W. and Larsen , J. W. 1978 . Variations of box plots . American Statistician , 32 : 12 – 16 .
- McMichael , G. A. , McKinstry , C. A. , Vucelick , J. A. and Lukas , J. A. 2005 . Fall Chinook salmon spawning activity versus daylight and flow in the tailrace of a large hydroelectric dam . North American Journal of Fisheries Management , 25 : 573 – 580 .
- McMichael , G. A. , Perkins , W. A. , Murray , C. J. , Chien , Y. J. , Rakowski , C. L. , Coleman , A. , Richmond , M. C. , Vucelick , J. A. , Arntzen , E. V. , Mueller , R. P. , Duberstein , C. A. and Lukas , J. A. 2003 . Subyearling Chinook salmon stranding in the Hanford Reach of the Columbia River , Richland, Washington : Battelle Northwest . PNWD-3308
- Payne , B. A. and Lapointe , M. F. 1997 . Channel morphology and lateral stability: effects on distribution of spawning and rearing habitat for Atlantic salmon in a wandering cobble-bed river . Canadian Journal of Fisheries and Aquatic Sciences , 54 : 2627 – 2636 .
- Perkins , W. A. and Richmond , M. C. 2004a . MASS2: modular aquatic simulation system in two dimensions—theory and numerical methods , Richland, Washington : Pacific Northwest National Laboratory . PNNL-14820-1
- Perkins , W. A. and Richmond , M. C. 2004b . MASS2: modular aquatic simulation system in two dimensions—user guide and reference , Richland, Washington : Pacific Northwest National Laboratory . PNNL-14820-2
- Perry , D. M. , Scruton , D. A. , McKinley , R. S. and Clarke , K. D. Validation of habitat hydraulic modeling: a telemetry study of Atlantic salmon (Salmo salar) and brook trout (Salvelinus fontinalis) movements and habitat use in relation to flow changes on the West Salmon River, Newfoundland, Canada . Proceedings of the Third International Symposium on Ecohydraulics . Salt Lake City : Utah State University .
- Reidel , S. P. , Campbell , N. P. , Fecht , K. R. and Lindsey , K. A. 1994 . “ Late Cenozoic structure and stratigraphy of south-central Washington ” . In Regional geology of Washington State , Edited by: Lasmanis , R. and Cheney , E. S. 159 – 180 . Olympia : Washington Department of Natural Resources, Division of Geology and Earth Resources . Bulletin 80
- Stalnaker , C. B. 1979 . “ The use of habitat preferenda for establishing flow regimes necessary for maintenance of fish habitat ” . In The ecology of regulated streams , Edited by: Ward , J. V. and Stanford , J. A. 321 – 337 . New York : Plenum .
- Steele , R. J. and Smokorowski , K. E. 2000 . “ Review of literature related to downstream ecological effects of hydroelectric power generation ” . In Canadian Technical Report of Fisheries and Aquatic Sciences 2334
- Tabachnick , B. G. and Fidell , L. S. 2001 . Using multivariate statistics, , 4th edition , Boston : Allyn and Bacon .
- U.S. Geological Survey . 2005 . Columbia River discharge data Available: http://www.cqs.washington.edu/dart/headwater_com.html (September 2006)
- Visser , R. , Dauble , D. D. and Geist , D. R. 2002 . Use of aerial photography to monitor fall Chinook salmon spawning in the Columbia River . Transactions of the American Fisheries Society , 131 : 1173 – 1179 .
- Waichler , S. R. , Perkins , W. A. and Richmond , M. C. 2005 . Hydrodynamic simulation of the Columbia River, Hanford Reach, 1940–2004 , Richland, Washington : Pacific Northwest National Laboratory . PNNL-15226
- Ward , J. V. and Stanford , J. A. 1983 . “ The serial discontinuity concept of lotic ecosystems ” . In Dynamics of lotic ecosystems , Edited by: Fontaine , T. D. and Bartell , S. M. 29 – 42 . Ann Arbor, Michigan : Ann Arbor Science .
- Wolcott , J. and Church , M. 1991 . Strategies for sampling spatially heterogeneous phenomena: the example of river gravels . Journal of Sedimentary Petrology , 61 : 534 – 543 .
- Wold , S. , Trygg , J. , Berglund , A. and Antti , H. 2001 . Some recent developments in PLS modeling . Chemometrics and Intelligent Laboratory Systems , 58 : 131 – 150 .
- Wolman , M. G. 1954 . A method of sampling coarse river-bed material . Transactions of the American Geophysical Union , 35 : 951 – 956 .