Factors Affecting Fish Entrainment into Massive Water Diversions in a Tidal Freshwater Estuary: Can Fish Losses be Managed?

References

• Arthur , J. F. , Ball , M. D. and Baughman , S. Y. 1996 . “ Summary of federal and state water project environmental impacts in the San Francisco Bay-Delta Estuary, California ” . In San Francisco Bay: the Ecosystem , Edited by: Hollibaugh , J. T. 445 – 495 . San Francisco : American Association for the Advancement of Science Pacific Division .
   Google Scholar
• Barnthouse , L. W. , Boreman , J. , Englert , T. L. , Kirk , W. L. and Horn , E. G. 1988 . Science law and Hudson River power plants , Edited by: Barnthouse , L. W. , Klauda , R. J. , Vaughan , D. S. and Kendall , R. L. 267 – 273 . Bethesda , Maryland : American Fisheries Society Monograph 4 .
   Google Scholar
• Barnthouse , L. W. , Van Winkle , W. and Vaughan , D. S. 1983 . Impingement losses of white perch at Hudson River power plants: magnitude and biological significance . Environmental Management , 7 : 355 – 364 .
   Web of Science ®Google Scholar
• Bay Institute, Center for Biological Diversity, and Natural Resources Defense Council . 2007 . Petition to the state of California Fish and Game Commission and supporting information for the listing of longfin smelt (Spirinchus thaleichthys) as an endangered species under the California Endangered Species Act Available: www.bay.org/LongfinSmeltState.pdf. (July 2007)
   Google Scholar
• Bennett , W. A. 2005 . “ Critical assessment of the delta smelt population in the San Francisco Estuary, California ” . In San Francisco Estuary Watershed Science 3: Volume 3, Issue 2, Article 1 Available: http://repositories.cdlib.org. (July 2007)
   Google Scholar
• Bennett , W. A. and Moyle , P. B. 1996 . “ Where have all the fishes gone? Interactive factors producing fish declines in the Sacramento-San Joaquin Estuary ” . In San Francisco Bay: the Ecosystem , Edited by: Hollibaugh , J. T. 519 – 542 . San Francisco : American Association for the Advancement of Science Pacific Division .
   Google Scholar
• Boreman , J. and Goodyear , C. P. 1981 . An empirical methodology for estimating entrainment losses at power plants sites on estuaries . Transactions of the American Fisheries Society , 110 : 255 – 262 .
   Web of Science ®Google Scholar
• Boreman , J. and Goodyear , C. P. 1988 . “ Estimates of entrainment mortality for striped bass and other fish species inhabiting the Hudson River estuary ” . In Science law and Hudson River power plants , Monograph 4 Edited by: Barnthouse , L. W. , Klauda , R. J. , Vaughan , D. S. and Kendall , R. L. 152 – 160 . Bethesda , Maryland : American Fisheries Society .
   Google Scholar
• Bowen , M. D. , Baskerville-Bridges , B. B. , Frizell , K. W. , Hess , L. , Carp , C. A. , Siegfried , S. M. and Wynn , S. L. 2004 . “ Empirical and experimental analyses of secondary louver efficiency at the Tracy Fish Collection Facility, March 1996 to November 1997 ” . In Tracy Fish Facility Studies , Vol. 11 , U.S. Bureau of Reclamation, Mid-Pacific Region, Denver Technical Service Center .
   Google Scholar
• Bowen , M. , Siegfried , S. , Liston , C. , Hess , L. and Karp , C. 1998 . “ Fish collections and secondary louver efficiency at the Tracy Fish Collection Facility, October 1993 to September 1995 ” . In Tracy Fish Collection Facility Studies , Vol. 7 , U.S. Bureau of Reclamation, Mid-Pacific Region, Denver Technical Service Center .
   Google Scholar
• Brown , L. R. , Greene , S. , Coulston , P. and Barrow , S. 1996 . “ An evaluation of the effectiveness of fish salvage operations at the intake to the California Aqueduct, 1979–1993 ” . In San Francisco Bay: the Ecosystem , Edited by: Hollibaugh , J. T. 497 – 518 . San Francisco : American Association for the Advancement of Science Pacific Division .
   Google Scholar
• Brown , L. R. and Michniuk , D. 2007 . Littoral fish assemblages of the alien-dominated Sacramento–San Joaquin Delta, California, 1980–1983 and 2001–2003 . Estuaries and Coasts , 30 : 186 – 200 .
   Web of Science ®Google Scholar
• California Department of Fish and Game . 2007 . Fish salvage monitoring Available: fpt://fpt.delta.dfg.ca.gov/salvage/. (August 1, 2007)
   Google Scholar
• California Department of Water Resources . 2007 . California Data Exchange Center Available: cdec.water.ca.gov. (July 1, 2007)
   Google Scholar
• Conomos , T. J. , Smith , R. E. and Gartner , J. W. 1985 . Environmental setting of San Francisco Bay . Hydrobiologia , 129 : 1 – 12 .
   Web of Science ®Google Scholar
• Daniels , R. A. , Limburg , K. E. , Schmidt , R. E. , Strayer , D. L. and Chambers , R. C. 2005 . “ Changes in fish assemblages in the tidal Hudson River, New York ” . In Historical changes in large river fish assemblages of the Americas , Edited by: Rinne , J. N. , Hughes , R. M. and Calamusso , B. 471 – 504 . Bethesda , Maryland : American Fisheries Society . Symposium 45
   Google Scholar
• Dege , M. and Brown , L. R. 2004 . “ Effect of outflow on spring and summertime distribution of larval and juvenile fishes in the upper San Francisco Estuary ” . In Early life history of fishes in the San Francisco estuary and watershed , Edited by: Feyrer , F. , Brown , L. R. , Brown , R. L. and Orsi , J. J. 49 – 65 . Bethesda , Maryland : American Fisheries Society . Symposium 39
   Google Scholar
• Feyrer , F. 2004 . “ Ecological segregation of native and alien larval fish assemblages in the southern Sacramento-San Joaquin Delta ” . In Early life history of fishes in the San Francisco estuary and watershed , Edited by: Feyrer , F. , Brown , L. R. , Brown , R. L. and Orsi , J. J. 67 – 79 . Bethesda , Maryland : American Fisheries Society . Symposium 39
   Google Scholar
• Feyrer , F. and Healey , M. 2003 . Fish community structure and environmental correlates in the highly altered southern Sacramento-San Joaquin Delta . Environmental Biology of Fishes , 66 : 123 – 132 .
   Web of Science ®Google Scholar
• Feyrer , F. , Herbold , B. , Matern , S. A. and Moyle , P. B. 2003 . Dietary shifts in a stressed fish assemblage: consequences of a bivalve invasion in the San Francisco Estuary . Environmental Biology of Fishes , 67 : 277 – 288 .
   Web of Science ®Google Scholar
• Feyrer , F. , Nobriga , M. L. and Sommer , T. R. 2007 . Multi-decadal trends for three declining fish species: habitat patterns and mechanisms in the San Francisco Estuary, California, USA . Canadian Journal of Fisheries and Aquatic Sciences , 64 : 723 – 734 .
   Web of Science ®Google Scholar
• Gingras , M. 1997 . “ Mark/recapture experiments at Clifton Court Forebay to estimate pre-screening losses to juvenile fishes 1976–1993 ” . In Interagency Ecological Program Technical Report 55
   Google Scholar
• Grimaldo , L. F. , Miller , R. E. , Peregrin , C. M. and Hymanson , Z. P. 2004 . “ Spatial and temporal distribution of ichthyoplankton in three habitat types of the Sacramento-San Joaquin Delta ” . In Early life history of fishes in the San Francisco estuary and watershed , Edited by: Feyrer , F. , Brown , L. R. , Brown , R. L. and Orsi , J. J. 81 – 96 . Bethesda , Maryland : American Fisheries Society . Symposium 39
   Google Scholar
• Hadderingh , R. H. , van Aerssen , G. H. F. M. , Groeneveld , L. , Jenner , H. A. and Van Der Stoep , J. W. 1983 . Fish impingement at power stations situated along the rivers Rhine and Meuse in The Netherlands . Aquatic Ecology , 17 : 129 – 141 .
   Google Scholar
• Henderson , P. A. , Turnpenny , A. W. H. and Bamber , R. N. 1984 . Long-term stability of a sand smelt (Atherina presbyter Cuvier) population subject to power station cropping . Journal of Applied Ecology , 21 : 1 – 10 .
   Web of Science ®Google Scholar
• Houde , E. D. Fish early life dynamics and recruitment variability . Tenth annual larval fish conference . Edited by: Hoyt , R. D. pp. 17 – 29 . Bethesda , Maryland : American Fisheries Society . Symposium 2
   Google Scholar
• Interagency Ecological Program . 2007 . Dayflow documentation Available: www.iep.water.ca.gov/dayflow/documentation/index.html. (July 15, 2007)
   Google Scholar
• Jassby , A. D. 2005 . “ Phytoplankton regulation in a eutrophic tidal river (San Joaquin River, California) ” . In San Francisco Estuary and Watershed Science, Volume 3, Issue 1, Article 3 Available: http://repositories.cdlib.org. (July 2007)
   Google Scholar
• Jassby , A. D. and Cloern , J. E. 2000 . Organic matter sources and rehabilitation of the Sacramento-San Joaquin Delta (California, USA) . Aquatic Conservation: Marine and Freshwater Ecosystems , 10 : 323 – 352 .
   Web of Science ®Google Scholar
• Jassby , A. D. , Kimmerer , W. J. , Monismith , S. G. , Armor , C. , Cloern , J. E. , Powell , T. M. , Schubel , J. R. and Vendlinski , T. J. 1995 . Isohaline position as a habitat indicator for estuarine populations . Ecological Applications , 5 : 272 – 289 .
   Web of Science ®Google Scholar
• Jensen , A. L. , Spigarelli , S. A. and Thommes , M. M. 1982 . Use of conventional fishery models to assess entrainment and impingement of three Lake Michigan fish species . Transactions of the American Fisheries Society , 111 : 21 – 34 .
   Web of Science ®Google Scholar
• Kano , R. M. 1990 . “ Occurrence and abundance of predator fish in Clifton Court Forebay, California ” . In Interagency Ecological Program Technical Report 24
   Google Scholar
• Kelso , J. R. M. and Millburn , G. S. 1979 . Entrainment and impingement of fish by power plants in the Great Lakes which use the once-through cooling process . Journal of Great Lakes Research , 5 ( 182 ) : 194
   Google Scholar
• Kimmerer , W. J. 2002a . Effects of freshwater flow on abundance of estuarine organisms: physical effects or trophic linkages? . Marine Ecology Progress Series , 243 : 39 – 55 .
   Web of Science ®Google Scholar
• Kimmerer , W. J. 2002b . Physical, biological, and management responses to variable freshwater flow into the San Francisco Estuary . Estuaries , 25 : 1275 – 1290 .
   Google Scholar
• Kimmerer , W. J. 2008 . “ Losses of Sacramento River Chinook salmon and delta smelt to entrainment in water diversions in the Sacramento-San Joaquin Delta ” . In San Francisco Estuary and Watershed Science Volume 6, Issue 2 (June), Article 2 Available: http://repositories.cdlib.org. (September 2008)
   Google Scholar
• Kimmerer , W. J. , Cowan , J. H. Jr. , Miller , L. W. and Rose , K. A. 2000 . Analysis of an estuarine striped bass population: influence of density-dependent mortality between metamorphosis and recruitment . Canadian Journal of Fisheries and Aquatic Sciences , 57 : 478 – 486 .
   Web of Science ®Google Scholar
• Kimmerer , W. J. , Cowan , J. H. Jr. , Miller , L. W. and Rose , K. A. 2001 . Analysis of an estuarine striped bass population: effects of environmental conditions during early life . Estuaries , 24 : 556 – 574 .
   Google Scholar
• Kingsford , R. T. 2000 . Ecological impacts of dams, water diversions and river management on floodplain wetlands in Australia . Austral Ecology , 25 : 109 – 127 .
   Web of Science ®Google Scholar
• Knowles , N. 2002 . Natural and management influences on freshwater inflows and salinity in the San Francisco Estuary at monthly to inter-annual scales . Water Resources Research , 38 : 1 – 11 .
   Web of Science ®Google Scholar
• Lane , R. R. , Day , J. W. Jr. and Thibodeaux , B. 1999 . Water quality analysis of a freshwater diversion at Caernarvon, Louisiana . Estuaries , 22 : 327 – 336 .
   Google Scholar
• Le , K. 2004 . “ Calculating Clifton Court Forebay inflow ” . In Methodology for flow and salinity estimates in Sacramento-San Joaquin Delta and Suisun Marsh. 25th Annual Progress Report 1 – 12 .
   Google Scholar
• Liston , C. , Karp , C. , Hess , L. and Hiebert , S. 1994 . Predator removal activities and intake channel studies, 1991–1992. Tracy Fish Facility Studies , Vol. 1 , U.S. Bureau of Reclamation, Mid-Pacific Region, Denver Technical Service Center .
   Google Scholar
• Love , M. S. , Caselle , J. E. and Herbinson , K. 1998 . Declines in nearshore rockfish recruitment and populations in the southern California Bight as measured by impingement rates in coastal electrical power generating stations . U.S. National Marine Fisheries Service Fishery Bulletin , 9 : 492 – 501 .
   Google Scholar
• Maes , J. , Taillieu , A. , Van Damme , P. A. , Cottenie , K. and Ollevier , F. 1998 . Seasonal patterns in the fish and crustacean community of a turbid temperate estuary . Estuarine, Coastal, and Shelf Science , 47 ( 143 ) : 151
   Google Scholar
• Massengill , R. R. 2004 . “ Entrainment of zooplankton at the Connecticut Yankee Plant ” . In The Connecticut River Ecological Study (1965–1973) revisited: ecology of the lower Connecticut River 1973–2003 , Monograph 9 Edited by: Jacobson , P. M. , Dixon , D. A. , Leggett , W. C. , Marcy , B. C. Jr. and Massengill , R. R. 59 – 64 . Bethesda , Maryland : American Fisheries Society .
   Google Scholar
• Monsen , N. E. , Cloern , J. E. and Burau , J. R. 2007 . “ Effects of flow diversions on water and habitat quality; examples from California's highly manipulated Sacramento-San Joaquin Delta ” . In San Francisco Estuary and Watershed Science Vol. 5 , /(3): article 2:Available: repositories.cdlib.org/jmie/sfews/vol5/1553/art2. (March 2008)
   Google Scholar
• Mount , J. F. 1995 . California Rivers and Streams , Berkeley : University of California Press .
   Google Scholar
• Moyle , P. B. 2002 . Inland Fishes of California , Berkeley : University of California Press .
   Google Scholar
• Moyle , P. B. 2008 . “ The future of fish in response to large-scale change in the San Francisco Estuary, California ” . In Mitigating impacts of natural hazards on fishery ecosystems , Edited by: McLaughlin , K. D. 357 – 374 . Bethesda , Maryland : American Fisheries Society . Symposium 64
   Google Scholar
• Moyle , P. B. , Herbold , B. , Stevens , D. E. and Miller , L. W. 1992 . Life history of delta smelt in the Sacramento-San Joaquin Estuary, California . Transactions of the American Fisheries Society , 121 : 67 – 77 .
   Web of Science ®Google Scholar
• Moyle , P. B. and Israel , J. A. 2005 . Untested assumptions: effectiveness of screen diversions for conservation of fish populations . Fisheries , 30 : 20 – 28 .
   Web of Science ®Google Scholar
• National Marine Fisheries Service . 2004 . “ Biological Opinion on the long-term Central Valley Project and State Water Project operations criteria and plan ” . In National Oceanic and Atmospheric Administration Fisheries, Southwest Region Long Beach , California
   Google Scholar
• Nobriga , M. 2002 . Larval delta smelt diet composition and feeding incidence: environmental and ontogenetic influences . California Fish and Game , 88 : 149 – 164 .
   Web of Science ®Google Scholar
• Nobriga , M. L. , Feyrer , F. , Baxter , R. D. and Chotkowski , M. 2005 . Fish community ecology in an altered river delta: spatial patterns in species composition, life history strategies, and biomass . Estuaries , 28 : 776 – 785 .
   Google Scholar
• Nobriga , M. L. , Matica , Z. and Hymanson , Z. P. 2004 . “ Evaluating entrainment vulnerability to agricultural irrigation diversions: a comparison among open-water fishes ” . In Early life history of fishes in the San Francisco estuary and watershed , Edited by: Feyrer , F. , Brown , L. R. , Brown , R. L. and Orsi , J. J. 281 – 295 . Bethesda , Maryland : American Fisheries Society . Symposium 39
   Google Scholar
• Nobriga , M. L. , Sommer , R. T. , Feyrer , F. and Fleming , K. 2008 . “ Long-term trends in summertime habitat suitability for Delta smelt (Hypomesus transpacificus) ” . In San Francisco Estuary and Watershed Science, Volume 6, Issue 1 (February), Article 1 Available: http://repositories.cdlib.org. (August 2008)
   Google Scholar
• Pawson , M. G. and Eaton , D. R. 1999 . The influence of a power station on the survival of juvenile sea bass in an estuarine nursery area . Journal of Fish Biology , 54 : 1143 – 1160 .
   Web of Science ®Google Scholar
• Postel , S. 1992 . Last oasis: facing water scarcity. World Watch Environmental Alert Series , New York : Norton .
   Google Scholar
• Postel , S. 2000 . Entering an era of water scarcity: the challenges ahead . Ecological Applications , 10 : 941 – 948 .
   Web of Science ®Google Scholar
• Postel , S. 2005 . “ Liquid assets: the critical need to safeguard freshwater ecosystems ” . In Worldwatch Paper 170
   Google Scholar
• Puckett , K. , Liston , C. , Karp , C. and Hess , L. 1996 . “ Preliminary examination of factors that influence fish salvage estimates at the Tracy Fish Collection Facility, California, 1993 and 1994 ” . In Tracy Fish Collection Facility Studies , Vol. 4 , U.S. Bureau of Reclamation, Mid-Pacific Region, Denver Technical Service Center .
   Google Scholar
• Rodriguez , C. A. , Flessa , K. W. and Dettman , D. L. 2001 . Effects of upstream diversion of Colorado River water on the estuarine bivalve mollusc Mulinia coloradoensis . Conservation Biology , 15 : 249 – 258 .
   Web of Science ®Google Scholar
• Rosenfield , J. R. and Baxter , R. D. 2007 . Population dynamics and distributional patterns of longfin smelt in the San Francisco Estuary . Transactions of the American Fisheries Society , 136 : 1577 – 1592 .
   Web of Science ®Google Scholar
• Service , R. 2007 . Delta blues, California-style . Science Magazine , 317 : 442 – 445 .
   Google Scholar
• Sommer , T. , Armor , C. , Baxter , R. , Breuer , R. , Brown , L. , Chotkowski , M. , Culberson , S. , Feyrer , F. , Gingras , M. , Herbold , B. , Kimmerer , W. , Mueller-Solger , A. , Nobriga , M. and Souza , K. 2007 . The collapse of pelagic fishes in the upper San Francisco Estuary . Fisheries , 32 (6) : 270 – 277 .
   Web of Science ®Google Scholar
• Sommer , T. , Baxter , R. and Herbold , B. 1997 . The resilience of splittail in the Sacramento-San Joaquin Estuary . Transactions of the American Fisheries Society , 126 : 961 – 976 .
   Web of Science ®Google Scholar
• State Water Resources Control Board . 1978 . Water right decision 1485 , Sacramento , California : State Water Resources Control Board .
   Google Scholar
• Stevens , D. E. 1979 . “ Environmental factors affecting striped bass (Morone saxatilis) in the Sacramento-San Joaquin Estuary ” . In San Francisco Bay: the Urbanized Estuary , Edited by: Conomos , R. J. 469 – 478 . San Francisco : American Association for the Advancement of Science Pacific Division .
   Google Scholar
• Stevens , D. E. , Kolhorst , D. W. , Miller , L. W. and Kelly , D. W. 1985 . The decline of striped bass in the Sacramento-San Joaquin Estuary, California . Transactions of the American Fisheries Society , 114 : 12 – 30 .
   Web of Science ®Google Scholar
• Stevens , D. E. and Miller , L. W. 1983 . Effects of river flow on abundance of young Chinook salmon, American shad, longfin smelt, and delta smelt in the Sacramento-San Joaquin River system . North American Journal of Fisheries Management , 3 : 425 – 437 .
   Google Scholar
• Stora , G. and Arnoux , A. 1983 . Effects of large freshwater diversions on benthos of a Mediterranean lagoon . Estuaries , 6 : 115 – 125 .
   Google Scholar
• Swanson , C. , Mager , R. , Doroshov , S. I. and Cech , J. J. 1996 . Use of salts, anesthetics, and polymers to minimize handling and transport mortality in delta smelt . Transactions of the American Fisheries Society , 125 : 326 – 329 .
   Web of Science ®Google Scholar
• Turner , J. L. 1966 . Distribution and food habits of ictalurid fishes in the Sacramento-San Joaquin Delta . California Department of Fish and Game Fish Bulletin , 136 : 130 – 143 .
   Google Scholar
• Turner , J. L. and Chadwick , P. 1972 . Distribution and abundance of young-of-the-year striped bass, Morone saxatilis, in relation to river flow in the Sacramento-San Joaquin Estuary . Transactions of the American Fisheries Society , 101 : 442 – 452 .
   Web of Science ®Google Scholar
• Turnpenny , A. W. H. 1988 . Fish impingement at estuarine power stations and its significance to commercial fishing . Journal of Fish Biology , 33 : 103 – 110 .
   Web of Science ®Google Scholar
• U.S. Fish and Wildlife Service . 2005 . Biological opinion on reinitiation of formal and early section 7 endangered species consultation on the coordinated operations of the Central Valley Project and State Water Project and the operational criteria and plan to address potential critical habitat issues , Service file 1-1-05-F-0044
   Google Scholar
• Venables , W. N. and Ripley , B. D. 2002 . Modern applied statistics with S, , 4th edition , New York : Springer-Verlag .
   Google Scholar
• Wright , S. A. and Schoellhamer , D. H. 2005 . “ Estimating sediment budgets at the interface between rivers and estuaries with application to the Sacramento–San Joaquin River Delta ” . In Water Resources Research 41
   Google Scholar