References
- Omenn GS, States DJ, Adamski MR et al. Overview of the HUPO Plasma Proteome Project: results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database. Proteomics5, 3226–3245 (2005).
- Omenn GS, Paik Y-K, Speicher D. The HUPO Plasma Proteome Project: a report from the Munich Congress. Proteomics6, 9–11 (2006).
- Villaneuva J, Shaffer DR, Philip J et al. Differential exoprotease activities confer tumor-specific serum peptidome patterns. J. Clin. Invest.116, 271–284 (2006).
- Brichory FM, Misek DE, Yim AM et al. An immune response manifested by the common occurrence of annexins I and II autoantibodies and high circulating levels of IL-6 in lung cancer. Proc. Natl Acad. Sci. USA98, 9824–9829 (2001).
- Wang X, Yu J, Sreekumar A et al. Autoantibody signatures in prostate cancer. New Engl. J. Med.353, 1224–1235 (2005).
- Kuster B, Schirle M, Mallick P, Aebersold R. Scoring proteomes with proteotypic peptide probes. Nature Rev. Mol. Cell Biol.6, 577–583 (2005).
- Craig R, Cortens JP, Beavis RC. The use of proteotypic peptide libraries for protein identification. Rapid Commun. Mass Spectrom19, 1844–1850 (2005).
- Kapp EA, Schutz F, Connolly LM et al. An evaluation, comparison, and accurate benchmarking of several publicly available MS/MS search algorithms: sensitivity and specificity analysis.Proteomics5, 3475–3490 (2005).
- Uhlen M, Ponten F. Antibody-based proteomics for human tissue profiling. Mol. Cell. Proteomics4(4), 384–393 (2005).
- States DJ, Omenn GS, Blackwell TW et al. Deriving high confidence protein identifications from a HUPO collaborative study of human serum and plasma. Nature Biotechnol(2006) (In Press).
- Barker PE, Wagner PD, Stein SE, Bunk DM, Srivastava S, Omenn GS. Standards for plasma and serum proteomics in early cancer detection: a needs assessment report from the NIST-NCI SMART Workshop, August 18–19, 2005. Clin. Chem.(2006) (In Press).
Websites
- University of Michigan: Human Proteome Organization Plasma Proteome Project www.bioinformatics.med.umich.edu/ hupo/ppp
- European Bioinformatics Institute www.ebi.ac.uk/pride
- Institute for Systems Biology www.peptideatlas.org/repository
- Human Protein Atlas www.proteinatlas.org