References
- Omenn GS, States DJ, Adamski M et al. Overview of the HUPO Plasma Proteome Project: results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database. Proteomics5, 3226–3245 (2005).
- States DJ, Omenn GS, Blackwell TW et al. Challenges in deriving high-confidence protein identifications from data gathered by a HUPO plasma proteome collaborative study. Nature Biotechnol.24, 333–338 (2006).
- Pieper R, Su Q, Gatlin CL, Huang ST, Anderson NL, Steiner S. Multi-component immunoaffinity subtraction chromatography: an innovative step towards a comprehensive survey of the human plasma proteome. Proteomics3, 422–432 (2003).
- Zhang H, Yan W, Aebersold R. Chemical probes and tandem mass spectrometry: a strategy for the quantitative analysis of proteomes and subproteomes. Curr. Opin. Chem. Biol.8, 66–75 (2004).
- Anderson NL Hunter CL. Quantitative mass spectrometric MRM assays for major plasma proteins. Mol. Cell. Proteomics (2006) (In Press).
- Anderson NL, Anderson NG, Haines LR, Hardie DB, Olafson RW, Pearson TW. Mass spectrometric quantitation of peptides and proteins using stable isotope standards and capture by anti-peptide antibodies (SISCAPA). J. Proteome Res.3, 235–244 (2004).
- Zhang H, Li XJ, Martin DB, Aebersold R. Identification and quantification of N-linked glycoproteins using hydrazide chemistry, stable isotope labeling and mass spectrometry. Nature Biotechnol.21, 660–666 (2003).
- Ludwig JA, Weinstein JN. Biomarkers in cancer staging, prognosis and treatment selection. Nature Rev. Cancer5, 845–856 (2005).
- Zhang H, Yi EC, Li XJ et al. High throughput quantitative analysis of serum proteins using glycopeptide capture and liquid chromatography mass spectrometry. Mol. Cell. Proteomics4, 144–155 (2005).
- Pan S, Zhang H, Rush J et al. High throughput proteome screening for biomarker detection. Mol. Cell. Proteomics4, 182–190 (2005).
- Wang W, Zhou H, Lin H et al. Quantification of proteins and metabolites by mass spectrometry without isotopic labeling or spiked standards. Anal. Chem.75, 4818–4826 (2003).
- Anderson NL, Anderson NG. The human plasma proteome: history, character, and diagnostic prospects. Mol. Cell. Proteomics1, 845–867 (2002).
- Nedelkov D, Kiernan UA, Niederkofler EE, Tubbs KA, Nelson RW. Investigating diversity in human plasma proteins. Proc. Natl Acad. Sci. USA102, 10852–10857 (2005).
Websites
- Human Protein Atlas www.hpr.se
- Cancer Profiling Database: Oncomine www.oncomine.org