The role of epigenetic mechanisms and processes in autoimmune disorders

References

• LiBCareyMWorkmanJLThe role of chromatin during transcriptionCell2007128470771917320508
   PubMed Web of Science ®Google Scholar
• MargueronRReinbergDChromatin structure and the inheritance of epigenetic informationNat Rev Genet201011428529620300089
   PubMed Web of Science ®Google Scholar
• WaddingtonCHThe epigenotypeInt J Epidemiol2012411101322186258
   PubMed Web of Science ®Google Scholar
• NanneyDLEpigenetic control systemsProc Natl Acad Sci U S A195844771271716590265
   PubMed Web of Science ®Google Scholar
• HollidayRThe inheritance of epigenetic defectsScience198723848241631703310230
   PubMed Web of Science ®Google Scholar
• JeppesenPHistone acetylation: a possible mechanism for the inheritance of cell memory at mitosisBioessays199719167749008418
   PubMed Web of Science ®Google Scholar
• TurnerBMHistone acetylation and an epigenetic codeBioessays200022983684510944586
   PubMed Web of Science ®Google Scholar
• GrewalSIMoazedDHeterochromatin and epigenetic control of gene expressionScience2003301563479880212907790
   PubMed Web of Science ®Google Scholar
• PtashneMOn the use of the word ‘epigenetic’Curr Biol2007177R233R23617407749
   PubMed Web of Science ®Google Scholar
• OoiSKQiuCBernsteinEDNMT3L connects unmethylated lysine 4 of histone H3 to de novo methylation of DNANature2007448715471471717687327
   PubMed Web of Science ®Google Scholar
• ZhangYReinbergDTranscription regulation by histone methylation: interplay between different covalent modifications of the core histone tailsGene Dev200115182343236011562345
   PubMed Web of Science ®Google Scholar
• KloseRJBirdAPGenomic DNA methylation: the mark and its mediatorsTrends Biochem Sci2006312899716403636
   PubMed Web of Science ®Google Scholar
• BirdAPerceptions of epigeneticsNature2007447714339639817522671
   PubMed Web of Science ®Google Scholar
• HaigDCommentary: The epidemiology of epigeneticsInt J Epidemiol2012411131622186259
   PubMed Web of Science ®Google Scholar
• HewagamaARichardsonBThe genetics and epigenetics of autoimmune diseasesJ Autoimmun200933131119349147
   PubMed Web of Science ®Google Scholar
• MedaFFolciMBaccarelliASelmiCThe epigenetics of autoimmunityCell Mol Immunol20118322623621278766
   PubMed Web of Science ®Google Scholar
• EhrlichMGama-SosaMAHuangLHAmount and distribution of 5-methylcytosine in human DNA from different types of tissues of cellsNucleic Acids Res1982108270927217079182
   PubMed Web of Science ®Google Scholar
• TakaiDJonesPAComprehensive analysis of CpG islands in human chromosomes 21 and 22Proc Natl Acad Sci U S A20029963740374511891299
   PubMed Web of Science ®Google Scholar
• IllingworthRSBirdAPCpG islands – ‘a rough guide’FEBS Lett2009583111713172019376112
   PubMed Web of Science ®Google Scholar
• Mariño-RamírezLSpougeJLKangaGCLandsmanDStatistical analysis of over-represented words in human promoter sequencesNucleic Acids Res200432394995814963262
   PubMed Web of Science ®Google Scholar
• JonesPAFunctions of DNA methylation: islands, start sites, gene bodies and beyondNat Rev Genet201213748449222641018
   PubMed Web of Science ®Google Scholar
• IllingworthRKerrADeSousaDA novel CpG island set identifies tissue-specific methylation at developmental gene lociPLoS Biol200861e2218232738
   PubMed Web of Science ®Google Scholar
• MaunakeaAKNagarajanRPBilenkyMConserved role of intragenic DNA methylation in regulating alternative promotersNature2010466730325325720613842
   PubMed Web of Science ®Google Scholar
• PanningBJaenischRDNA hypomethylation can activate Xist expression and silence X-linked genesGene Dev19961016199120028769643
   PubMed Web of Science ®Google Scholar
• SleutelsFZwartRBarlowDPThe non-coding Air RNA is required for silencing autosomal imprinted genesNature2002415687381081311845212
   PubMed Web of Science ®Google Scholar
• IrizarryRALadd-AcostaCWenBThe human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shoresNat Genet200941217818619151715
   PubMed Web of Science ®Google Scholar
• StadlerMBMurrRBurgerLDNA-binding factors shape the mouse methylome at distal regulatory regionsNature2011480737849049522170606
   PubMed Web of Science ®Google Scholar
• WienchMJohnSBaekSDNA methylation status predicts cell type-specific enhancer activityEMBO J201130153028303921701563
   PubMed Web of Science ®Google Scholar
• KriaucionisSHeintzNThe nuclear DNA base 5-Hydroxymethylcytosine is present in Purkinje neurons and the brainScience2009324592992993019372393
   PubMed Web of Science ®Google Scholar
• WilliamsKChristensenJHelinKDNA methylation: TET proteins – guardians of CpG islands?EMBO Rep2012131283522157888
   PubMed Web of Science ®Google Scholar
• PastorWAPapeUJHuangYGenome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cellsNature2011473734739439721552279
   PubMed Web of Science ®Google Scholar
• StroudHFengSMorey KinneySPradhanSJacobsenSE5-Hydroxymethylcytosine is associated with enhancers and gene bodies in human embryonic stem cellsGenome Biol2011126R5421689397
   PubMed Web of Science ®Google Scholar
• JonesPALiangGRethinking how DNA methylation patterns are maintainedNat Rev Genet2009101180581119789556
   PubMed Web of Science ®Google Scholar
• BallestarEAn introduction to epigeneticsAdv Exp Med Biol201171111121627038
   PubMed Web of Science ®Google Scholar
• MétivierRGallaisRTiffocheCCyclical DNA methylation of a transcriptionally active promoterNature20084527183455018322525
   PubMed Web of Science ®Google Scholar
• OoiSKBestorTHThe colorful history of active DNA demethylationCell200813371145114818585349
   PubMed Web of Science ®Google Scholar
• BoothMJBrancoMRFiczGQuantitative sequencing of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolutionScience2012336608393493722539555
   PubMed Web of Science ®Google Scholar
• EdenSCedarHRole of DNA methylation in the regulation of transcriptionCurr Opin Genet Dev1994422552598032203
   PubMed Web of Science ®Google Scholar
• CurradiMIzzoABadaraccoGLandsbergerNMolecular mechanisms of gene silencing mediated by DNA methylationMol Cell Biol20022293157317311940673
   PubMed Web of Science ®Google Scholar
• HendrichBBirdAIdentification and characterization of a family of mammalian methyl-CpG binding proteinsMol Cell Biol19981811653865479774669
   PubMed Web of Science ®Google Scholar
• SmithCLPetersonCLA conserved Swi2/Snf2 ATPase motif couples ATP hydrolysis to chromatin remodelingMol Cell Biol200525145880589215988005
   PubMed Web of Science ®Google Scholar
• FischleWTsengBSDormannHLRegulation of HP1-chromatin binding by histone H3 methylation and phosphorylationNature200543870711116112216222246
   PubMed Web of Science ®Google Scholar
• Shogren-KnaakMIshiiHSunJMPazinMJDavieJRPetersonCLHistone H4-K16 acetylation controls chromatin structure and protein interactionsScience2006311576284484716469925
   PubMed Web of Science ®Google Scholar
• GregoryPDWagnerKHörzWHistone acetylation and chromatin remodelingExp Cell Res2001265219520211302684
   PubMed Web of Science ®Google Scholar
• NeumannHHancockSMBuningRA method for genetically installing site-specific acetylation in recombinant histones defines the effects of H3 K56 acetylationMol Cell200936115316319818718
   PubMed Web of Science ®Google Scholar
• LiGMargueronRHuGStokesDWangYHReinbergDHighly compacted chromatin formed in vitro reflects the dynamics of transcription activation in vivoMol Cell2010381415320385088
   PubMed Web of Science ®Google Scholar
• ChenPLiGDynamics of the higher-order structure of chromatinProtein Cell201011196797121153512
   PubMed Web of Science ®Google Scholar
• ScharfANImhofAEvery methyl counts – epigenetic calculusFEBS Lett2011585132001200721108946
   PubMed Web of Science ®Google Scholar
• BallestarEEpigenetic alterations in autoimmune rheumatic diseasesNat Rev Rheumatol20117526327121343899
   PubMed Web of Science ®Google Scholar
• KouzaridesTChromatin modifications and their functionCell2007128469370517320507
   PubMed Web of Science ®Google Scholar
• SanchezRZhouMMThe PHD finger: a versatile epigenome readerTrends Biochem Sci201136736437221514168
   PubMed Web of Science ®Google Scholar
• ClapierCRCairnsBRThe biology of chromatin remodeling complexesAnn Rev Biochem20097827330419355820
   PubMed Web of Science ®Google Scholar
• MinardMEJainAKBartonMCAnalysis of epigenetic alterations to chromatin during developmentGenesis200947855957219603511
   PubMed Web of Science ®Google Scholar
• MizuguchiGShenXLandryJWuWHSenSWuCATP-driven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complexScience2004303565634334814645854
   PubMed Web of Science ®Google Scholar
• MattickJSChallenging the dogma: the hidden layer of non-protein-coding RNAs in complex organismsBioessays2003251093093914505360
   PubMed Web of Science ®Google Scholar
• EstellerMNon-coding RNAs in human diseaseNat Rev Genet2011121286187422094949
   PubMed Web of Science ®Google Scholar
• HeLHannonGJMicroRNAs: small RNAs with a big role in gene regulationNat Rev Genet20045752253115211354
   PubMed Web of Science ®Google Scholar
• FriedmanRCFarhKKBurgeCBBartelDPMost mammalian mRNAs are conserved targets of microRNAsGenome Res20091919210518955434
   PubMed Web of Science ®Google Scholar
• BentwichIAvnielAKarovYIdentification of hundreds of conserved and nonconserved human microRNAsNat Genet200537776677015965474
   PubMed Web of Science ®Google Scholar
• YektaSShihIBartelDPMicroRNA-directed cleavage of HOXB8 mRNAScience2004304567059459615105502
   PubMed Web of Science ®Google Scholar
• MendellJTMicroRNAs: critical regulators of development, cellular physiology and malignancyCell Cycle2005491179118416096373
   PubMed Web of Science ®Google Scholar
• RoccaroAMSaccoAJiaXmicroRNA-dependent modulation of histone acetylation in Waldenström macroglobulinemiaBlood201011691506151420519629
   PubMed Web of Science ®Google Scholar
• SampathDLiuCVasanKHistone deacetylases mediate the silencing of miR-15a, miR-16, and miR-29b in chronic lymphocytic leukemiaBlood201211951162117222096249
   PubMed Web of Science ®Google Scholar
• MercerTRDingerMEMattickJSLong non-coding RNAs: insights into functionsNat Rev Genet200910315515919188922
   PubMed Web of Science ®Google Scholar
• GuptaRAShahNWangKCLong non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasisNature201046472911071107620393566
   PubMed Web of Science ®Google Scholar
• WangXAraiSSongXInduced ncRNAs allosterically modify RNA-binding proteins in cis to inhibit transcriptionNature2008454720012613018509338
   PubMed Web of Science ®Google Scholar
• MartianovIRamadassASerra BarrosAChowNAkoulitchevARepression of the human dihydrofolate reductase gene by a non-coding interfering transcriptNature2007445712866667017237763
   PubMed Web of Science ®Google Scholar
• HeYVogelsteinBVelculescuVEPapadopoulosNKinzlerKWThe antisense transcriptomes of human cellsScience200832259091855185719056939
   PubMed Web of Science ®Google Scholar
• LyonMFGene action in the X-chromosome of the mouse (Mus musculus L.)Nature196119037237313764598
   PubMed Web of Science ®Google Scholar
• TakagiNSasakiMPreferential inactivation of the paternally derived X chromosome in the extraembryonic membranes of the mouseNature197525655196406421152998
   PubMed Web of Science ®Google Scholar
• RastanSTiming of X-chromosome inactivation in postimplantation mouse embryosJ Embryol Exp Morphol19827111246185603
   PubMedGoogle Scholar
• PennyGDKayGFSheardownSARastanSBrockdorffNRequirement for Xist in X chromosome inactivationNature199637965611311378538762
   PubMed Web of Science ®Google Scholar
• HerzingLBRomerJTHornJMAshworthAXist has properties of the X-chromosome inactivation centreNature199738666222722759069284
   PubMed Web of Science ®Google Scholar
• OkamotoIOtteAPAllisCDReinbergDHeardEEpigenetic dynamics of imprinted X inactivation during early mouse developmentScience2004303565864464914671313
   PubMed Web of Science ®Google Scholar
• ChengMKDistecheCMSilence of the fathers: early X inactivationBioessays200426882182415273983
   PubMed Web of Science ®Google Scholar
• LucchesiJCKellyWGPanningBChromatin remodeling in dosage compensationAnn Rev Genet20053961565116285873
   PubMed Web of Science ®Google Scholar
• Zandman-GoddardGPeevaEShoenfeldYGender and autoimmunityAutoimmun Rev20076636637217537382
   PubMed Web of Science ®Google Scholar
• McCombePAGreerJMMackayIRSexual dimorphism in autoimmune diseaseCurr Mol Med2009991058107919747114
   PubMed Web of Science ®Google Scholar
• GreerJMMcCombePARole of gender in multiple sclerosis: clinical effects and potential molecular mechanismsJ Neuroimmunol20112341–271821474189
   PubMed Web of Science ®Google Scholar
• IslamTGaudermanWJCozenWHamiltonASBurnettMEMackTMDifferential twin concordance for multiple sclerosis by latitude of birthplaceAnn Neurol2006601566416685699
   PubMed Web of Science ®Google Scholar
• RistoriGCannoniSStaziMAMultiple sclerosis in twins from continental Italy and Sardinia: a nationwide studyAnn Neurol2006591273416240370
   PubMed Web of Science ®Google Scholar
• RedondoMJJeffreyJFainPREisenbarthGSOrbanTConcordance for islet autoimmunity among monozygotic twinsN Engl J Med2008359262849285019109586
   PubMed Web of Science ®Google Scholar
• JacobsKBYeagerMZhouWDetectable clonal mosaicism and its relationship to aging and cancerNat Genet201244665165822561519
   PubMed Web of Science ®Google Scholar
• LaurieCCLaurieCARiceKDetectable clonal mosaicism from birth to old age and its relationship to cancerNat Genet201244664265022561516
   PubMed Web of Science ®Google Scholar
• JavierreBMFernandezAFRichterJChanges in the pattern of DNA methylation associate with twin discordance in systemic lupus erythematosusGenome Res201020217017920028698
   PubMed Web of Science ®Google Scholar
• BaranziniSEMudgeJvan VelkinburghJCGenome, epigenome and RNA sequences of monozygotic twins discordant for multiple sclerosisNature201046472931351135620428171
   PubMed Web of Science ®Google Scholar
• BellCGTeschendorffAERakyanVKMaxwellAPBeckSSavageDAGenome-wide DNA methylation analysis for diabetic nephropathy in type 1 diabetes mellitusBMC Med Genomics201033320687937
   PubMed Web of Science ®Google Scholar
• BreitlingLPYangRKornBBurwinkelBBrennerHTobacco-smoking-related differential DNA methylation: 27K discovery and replicationAm J Hum Genet201188445045721457905
   PubMed Web of Science ®Google Scholar
• RakyanVKDownTABaldingDJBeckSEpigenome-wide association studies for common human diseasesNat Rev Genet201112852954121747404
   PubMed Web of Science ®Google Scholar
• GervinKVigelandMDMattingsdalMDNA methylation and gene expression changes in monozygotic twins discordant for psoriasis: identification of epigenetically dysregulated genesPLoS Genet201281e100245422291603
   PubMed Web of Science ®Google Scholar
• RakyanVKBeyanHDownTAIdentification of type 1 diabetes-associated DNA methylation variable positions that precede disease diagnosisPLoS Genet201179e100230021980303
   PubMed Web of Science ®Google Scholar
• HeijmansBTMillJCommentary: The seven plagues of epigenetic epidemiologyInt J Epidemiol2012411747822269254
   PubMed Web of Science ®Google Scholar
• WilsonCBRowellESekimataMEpigenetic control of T-helper-cell differentiationNat Rev Immunol2009929110519151746
   PubMed Web of Science ®Google Scholar
• AuneTMCollinsPLChangSEpigenetics and T helper 1 differentiationImmunology2009126329930519178593
   PubMed Web of Science ®Google Scholar
• BergmanYCedarHEpigenetic control of recombination in the immune systemSemin Immunol201022632332920832333
   PubMed Web of Science ®Google Scholar
• CedarHBergmanYEpigenetics of haematopoietic cell developmentNat Rev Immunol201111747848821660052
   PubMed Web of Science ®Google Scholar
• Fernández-MoreraJLCalvaneseVRodríguez-RoderoSMenéndez-TorreEFragaMFEpigenetic regulation of the immune system in health and diseaseTissue Antigens201076643143921058938
   PubMedGoogle Scholar
• JansonPCWinerdalMEWinqvistOAt the crossroads of T helper lineage commitment-Epigenetics points the wayBiochim Biophys Acta20091790990691919162128
   PubMed Web of Science ®Google Scholar
• LalGBrombergJSEpigenetic mechanisms of regulation of Foxp3 expressionBlood2009114183727373519641188
   PubMed Web of Science ®Google Scholar
• LeeGRKimSTSpilianakisCGFieldsPEFlavellRAT helper cell differentiation: regulation by cis elements and epigeneticsImmunity200624436937916618596
   PubMed Web of Science ®Google Scholar
• PangKCDingerMEMercerTRGenome-wide identification of long noncoding RNAs in CD8+ T cellsJ Immunol2009182127738774819494298
   PubMed Web of Science ®Google Scholar
• SawalhaAHEpigenetics and T-cell immunityAutoimmunity200841424525218432405
   PubMed Web of Science ®Google Scholar
• Vanden BergheWNdlovuMNHoya-AriasRDijsselbloemNGerloSHaegemanGKeeping up NF-kappaB appearances: epigenetic control of immunity or inflammation-triggered epigeneticsBiochem Pharmacol20067291114113116934762
   PubMed Web of Science ®Google Scholar
• WilsonCBMakarKWShnyrevaMFitzpatrickDRDNA methylation and the expanding epigenetics of T cell lineage commitmentSemin Immunol200517210511915737572
   PubMed Web of Science ®Google Scholar
• AllanRSZuevaECammasFAn epigenetic silencing pathway controlling T helper 2 cell lineage commitmentNature2012 Epub July 4.
   Google Scholar
• BlümlSZupkovitzGKirchbergerSEpigenetic regulation of dendritic cell differentiation and function by oxidized phospholipidsBlood2009114275481548919864645
   PubMed Web of Science ®Google Scholar
• SubrahmanyamRSenREpigenetic features that regulate IgH locus recombination and expressionCurr Top Microbiol Immunol2012356396321779986
   PubMed Web of Science ®Google Scholar
• KohASKingstonREBenoistCMathisDGlobal relevance of Aire binding to hypomethylated lysine-4 of histone-3Proc Natl Acad Sci U S A201010729130161302120615959
   PubMed Web of Science ®Google Scholar
• WilliamsGTMourtada-MaarabouniMFarzanehFA critical role for non-coding RNA GAS5 in growth arrest and rapamycin inhibition in human T-lymphocytesBiochem Soc Trans201139248248621428924
   PubMed Web of Science ®Google Scholar
• KinoTHurtDEIchijoTNaderNChrousosGPNoncoding RNA gas5 is a growth arrest- and starvation-associated repressor of the glucocorticoid receptorSci Signal20103107ra820124551
   PubMed Web of Science ®Google Scholar
• AshwellJDLuFWVacchioMSGlucocorticoids in T cell development and functionAnnu Rev Immunol20001830934510837061
   PubMed Web of Science ®Google Scholar
• LiQJChauJEbertPJmiR-181a is an intrinsic modulator of T cell sensitivity and selectionCell2007129114716117382377
   PubMed Web of Science ®Google Scholar
• BelkayaSSilgeRLHooverARDynamic modulation of thymic microRNAs in response to stressPloS One2011611e2758022110677
   PubMed Web of Science ®Google Scholar
• LiBSamantaASongXFOXP3 interactions with histone acetyltransferase and class II histone deacetylases are required for repressionProc Natl Acad Sci U S A2007104114571457617360565
   PubMed Web of Science ®Google Scholar
• TaoRde ZoetenEFÖzkaynakEDeacetylase inhibition promotes the generation and function of regulatory T cellsNat Med200713111299130717922010
   PubMed Web of Science ®Google Scholar
• BettiniMLPanFBettiniMLoss of epigenetic modification driven by the Foxp3 transcription factor leads to regulatory T cell insufficiencyImmunity201236571773022579476
   PubMed Web of Science ®Google Scholar
• BeyerMThabetYMüllerRURepression of the genome organizer SATB1 in regulatory T cells is required for suppressive function and inhibition of effector differentiationNat Immunol201112989890721841785
   PubMed Web of Science ®Google Scholar
• ZhouLParkJJZhengQDongZMiQMicroRNAs are key regulators controlling iNKT and regulatory T-cell development and functionCell Mol Immunol20118538038721822298
   PubMed Web of Science ®Google Scholar
• SongWTaiYTTianZHDAC inhibition by LBH589 affects the phenotype and function of human myeloid dendritic cellsLeukemia201125116116821102427
   PubMed Web of Science ®Google Scholar
• IliopoulosDKavousanakiMIoannouMBoumpasDVerginisPThe negative costimulatory molecule PD-1 modulates the balance between immunity and tolerance via miR-21Eur J Immunol20114161754176321469086
   PubMed Web of Science ®Google Scholar
• GialitakisMKretsovaliASpilianakisCCoordinated changes of histone modifications and HDAC mobilization regulate the induction of MHC class II genes by Trichostatin ANucleic Acids Res200634376577216452299
   PubMed Web of Science ®Google Scholar
• RamagopalanSVEbersGCMultiple sclerosis: major histocompatibility complexity and antigen presentationGenome Med200911110519895714
   PubMed Web of Science ®Google Scholar
• ChaoMJRamagopalanSVHerreraBMEpigenetics in multiple sclerosis susceptibility: difference in transgenerational risk localizes to the major histocompatibility complexHum Mol Genet200918226126619098025
   PubMed Web of Science ®Google Scholar
• ChaoMJRamagopalanSVHerreraBMMHC transmission: insights into gender bias in MS susceptibilityNeurology201176324224621209377
   PubMed Web of Science ®Google Scholar
• HedrichCMTsokosGCEpigenetic mechanisms in systemic lupus erythematosus and other autoimmune diseasesTrends Mol Med2011171271472421885342
   PubMed Web of Science ®Google Scholar
• RenaudineauYGaraudSLe DantecCAlonso-RamirezRDaridonCYouinouPAutoreactive B cells and epigeneticsClin Rev Allergy Immunol2010391859419644775
   PubMed Web of Science ®Google Scholar
• ListonAAutoimmunity: beyond the immune systemImmunol Cell Biol200886429529618301386
   PubMed Web of Science ®Google Scholar
• LonyaiAKodamaSBurgerDFaustmanDLFetal Hox11 expression patterns predict defective target organs: a novel link between developmental biology and autoimmunityImmunol Cell Biol200886430130918301381
   PubMed Web of Science ®Google Scholar
• KarouzakisEGayREMichelBAGaySNeidhartMDNA hypomethylation in rheumatoid arthritis synovial fibroblastsArthritis Rheum200960123613362219950268
   PubMed Web of Science ®Google Scholar
• HuberLCBrockMHemmatazadHHistone deacetylase/acetylase activity in total synovial tissue derived from rheumatoid arthritis and osteoarthritis patientsArthritis Rheum20075641087109317393417
   PubMed Web of Science ®Google Scholar
• MastronardiFGNoorAWoodDDPatonTMoscarelloMAPeptidyl argininedeiminase 2 CpG island in multiple sclerosis white matter is hypomethylatedJ Neurosci Res20078592006201617469138
   PubMed Web of Science ®Google Scholar
• CiavattaDJYangJPrestonGAEpigenetic basis for aberrant upregulation of autoantigen genes in humans with ANCA vasculitisJ Clin Invest201012093209321920714105
   PubMed Web of Science ®Google Scholar
• WenZKXuWXuLDNA hypomethylation is crucial for apoptotic DNA to induce systemic lupus erythematosus-like autoimmune disease in SLE-non-susceptible miceRheumatology200746121796180318032537
   PubMed Web of Science ®Google Scholar
• DiekerJMullerSEpigenetic Histone Code and AutoimmunityClin Rev Allergy Immunol2010391788419662539
   PubMed Web of Science ®Google Scholar
• PlauéSMullerSvan RegenmortelMHA branched, synthetic octapeptide of ubiquitinated histone H2A as target of autoantibodiesJ Exp Med19891695160716172541220
   PubMed Web of Science ®Google Scholar
• DiekerJWFransenJHvan BavelCCApoptosis-induced acetylation of histones is pathogenic in systemic lupus erythematosusArthritis Rheum20075661921193317530637
   PubMed Web of Science ®Google Scholar
• KlipHVerloopJvan GoolJDKosterMEBurgerCWvan LeeuwenFEOMEGA Project GroupHypospadias in sons of women exposed to diethylstilbestrol in utero: a cohort studyLancet200235993121102110711943257
   PubMed Web of Science ®Google Scholar
• AlonsoAHernánMATemporal trends in the incidence of multiple sclerosis: a systematic reviewNeurology200871212913518606967
   PubMed Web of Science ®Google Scholar
• HirstMMarraMAEpigenetics and human diseaseInt J Biochem Cell Biol200941113614618852064
   PubMed Web of Science ®Google Scholar
• OrtonSMHerreraBMYeeIMCanadian Collaborative Study GroupSex ratio of multiple sclerosis in Canada: a longitudinal studyLancet Neurol200651193293617052660
   PubMed Web of Science ®Google Scholar
• OsoegawaMKiraJFukazawaTResearch Committee of Neuroimmunological DiseasesTemporal changes and geographical differences in multiple sclerosis phenotypes in Japanese: nationwide survey results over 30 yearsMult Scler200915215917318987106
   PubMed Web of Science ®Google Scholar
• FurszyferJKurlandLTMcConaheyWMWoolnerLBElvebackLREpidemiologic aspects of Hashimoto’s thyroiditis and Graves’ disease in Rochester, Minnesota (1935–1967), with special reference to temporal trendsMetabolism19722131972045066850
   PubMed Web of Science ®Google Scholar
• PoirierLAThe effects of diet, genetics and chemicals on toxicity and aberrant DNA methylation: an introductionJ Nutr2002132Suppl 82336S2339S12163688
   PubMed Web of Science ®Google Scholar
• McGowanPOMeaneyMJSzyfMDiet and the epigenetic (re) programming of phenotypic differences in behaviorBrain Res20081237122418694740
   PubMed Web of Science ®Google Scholar
• HeijmansBTTobiEWSteinADPersistent epigenetic differences associated with prenatal exposure to famine in humansProc Natl Acad Sci U S A200810544170461704918955703
   PubMed Web of Science ®Google Scholar
• van EngelandMWeijenbergMPRoemenGMEffects of dietary folate and alcohol intake on promoter methylation in sporadic colorectal cancer: the Netherlands cohort study on diet and cancerCancer Res200363123133313712810640
   PubMed Web of Science ®Google Scholar
• de VogelSBongaertsBWWoutersKAAssociations of dietary methyl donor intake with MLH1 promoter hypermethylation and related molecular phenotypes in sporadic colorectal cancerCarcinogenesis20082991765177318339680
   PubMed Web of Science ®Google Scholar
• KuneGWatsonLColorectal cancer protective effects and the dietary micronutrients folate, methionine, vitamins B6, B12, C, E, selenium, and lycopeneNutr Cancer2006561112117176213
   PubMed Web of Science ®Google Scholar
• MasSLafuenteMJCrescentiALower specific micronutrient intake in colorectal cancer patients with tumors presenting promoter hypermethylation in p16(INK4a), p4(ARF) and hMLH1Anticancer Res20072721151115617465256
   PubMed Web of Science ®Google Scholar
• HardyTMTollefsbolTOEpigenetic diet: impact on the epigenome and cancerEpigenomics20113450351822022340
   PubMed Web of Science ®Google Scholar
• SelmiCTsuneyamaKNutrition, geoepidemiology, and autoimmunityAutoimmun Rev201095A267A27019969106
   PubMed Web of Science ®Google Scholar
• ProcacciniCCarboneFGalganiMObesity and susceptibility to autoimmune diseasesExpert Rev Clin Immunol20117328729421595595
   PubMed Web of Science ®Google Scholar
• GardenerHMungerKLChitnisTMichelsKBSpiegelmanDAscherioAPrenatal and perinatal factors and risk of multiple sclerosisEpidemiology200920461161819333127
   PubMed Web of Science ®Google Scholar
• MungerKLChitnisTAscherioABody size and risk of MS in two cohorts of US womenNeurology200973191543155019901245
   PubMed Web of Science ®Google Scholar
• Weinstock-GuttmanBZivadinovRMahfoozNSerum lipid profiles are associated with disability and MRI outcomes in multiple sclerosisJ Neuroinflammation2011812721970791
   PubMed Web of Science ®Google Scholar
• MatareseGCarrieriPBLa CavaALeptin increase in multiple sclerosis associates with reduced number of CD4+CD25+ regulatory T cellsProc Natl Acad Sci U S A2005102145150515515788534
   PubMed Web of Science ®Google Scholar
• CampiónJMilagroFIMartínezJAIndividuality and epigenetics in obesityObes Rev200910438339219413700
   PubMed Web of Science ®Google Scholar
• McLeodJGHammondSRHallpikeJFEpidemiology of multiple sclerosis in Australia. With NSW and SA survey resultsMed J Aust199416031171228295576
   PubMed Web of Science ®Google Scholar
• StaplesJAPonsonbyALLimLLMcMichaelAJEcologic analysis of some immune-related disorders, including type 1 diabetes, in Australia: latitude, regional ultraviolet radiation, and disease prevalenceEnviron Health Perspect2003111451852312676609
   PubMed Web of Science ®Google Scholar
• AlamanosYVoulgariPVDrososAAIncidence and prevalence of rheumatoid arthritis, based on the 1987 American College of Rheumatology criteria: a systematic reviewSemin Arthritis Rheum200636318218817045630
   PubMed Web of Science ®Google Scholar
• HengstmanGJvan VenrooijWJVencovskyJMoutsopoulosHMvan EngelenBGThe relative prevalence of dermatomyositis and polymyositis in Europe exhibits a latitudinal gradientAnn Rheum Dis200059214114210666171
   PubMed Web of Science ®Google Scholar
• BeretichBDBeretichTMExplaining multiple sclerosis prevalence by ultraviolet exposure: a geospatial analysisMult Scler200915889189819667017
   PubMed Web of Science ®Google Scholar
• BecklundBRSeversonKSVangSVDeLucaHFUV radiation suppresses experimental autoimmune encephalomyelitis independent of vitamin D productionProc Natl Acad Sci U S A2010107146418642320308557
   PubMed Web of Science ®Google Scholar
• DongZBodeAMThe role of histone H3 phosphorylation (Ser10 and Ser28) in cell growth and cell transformationMol Carcinog200645641642116637065
   PubMed Web of Science ®Google Scholar
• StaibanoSMascoloMSianoMIlardiGDe RosaGGenetic, epigenetic and molecular changes in melanoma: a new paradigm for biological classificationMurphMResearch on Melanoma: A Glimpse into Current Directions and Future TrendsRijekaInTech20113568 Available from: http://www.intechopen.com/books/research-on-melanoma-a-glimpse-into-current-directions-and-future-trends/genetic-epigenetic-and-molecular-changes-in-melanoma-a-new-paradigm-for-biological-classification. Accessed July 13, 2012.
   Google Scholar
• HallHIMayDSLewRAKohHKNadelMSun protection behaviors of the US white populationPrev Med19972644014079245656
   PubMed Web of Science ®Google Scholar
• Thomas-AhnerJMWulffBCToberKLKusewittDFRiggenbachJAOberyszynTMGender differences in UVB-induced skin carcinogenesis, inflammation, and DNA damageCancer Res20076773468347417389759
   PubMed Web of Science ®Google Scholar
• KarlicHVargaFImpact of vitamin D metabolism on clinical epigeneticsClin Epigenetics201121556122704269
   PubMed Web of Science ®Google Scholar
• SongYFleetJC1,25 dihydroxycholecalciferol-mediated calcium absorption and gene expression are higher in female than in male miceJ Nutr200413481857186115284366
   PubMed Web of Science ®Google Scholar
• KragtJvan AmerongenBKillesteinJHigher levels of 25-hydroxyvitamin D are associated with a lower incidence of multiple sclerosis only in womenMult Scler200915191518701572
   PubMed Web of Science ®Google Scholar
• BigazziPEAutoimmunity and heavy metalsLupus1994364494537704000
   PubMed Web of Science ®Google Scholar
• HemdanNYAEmmrichFFaberSLehmannJSackUAlterations of Th1/Th2 reactivity by heavy metals possible consequences include induction of autoimmune diseasesAnn N Y Acad Sci2007110912913717785298
   PubMed Web of Science ®Google Scholar
• HouLZhangXWangDBaccarelliAEnvironmental chemical exposures and human epigeneticsInt J Epidemiol20114117910522253299
   PubMed Web of Science ®Google Scholar
• Martinez-ZamudioRHaHCEnvironmental epigenetics in metal exposureEpigenetics20116782082721610324
   PubMed Web of Science ®Google Scholar
• ArnsonYShoenfeldYAmitalHEffects of tobacco smoke on immunity, inflammation and autoimmunityJ Autoimmun2010343J258J26520042314
   PubMed Web of Science ®Google Scholar
• SuterMMaJHarrisASMaternal tobacco use modestly alters correlated epigenome-wide placental DNA methylation and gene expressionEpigenetics20116111284129421937876
   PubMed Web of Science ®Google Scholar
• YungRLRichardsonBCDrug-induced lupusRheum Dis Clin North Am199420161867512273
   PubMed Web of Science ®Google Scholar
• LeeBHYegnasubramanianSLinXNelsonWGProcainamide is a specific inhibitor of DNA methyltransferase 1J Biol Chem200528049407494075616230360
   PubMed Web of Science ®Google Scholar
• GorelikGFangJYWuASawalhaAHRichardsonBImpaired T cell protein kinase C delta activation decreases ERK pathway signaling in idiopathic and hydralazine-induced lupusJ Immunol200717985553556317911642
   PubMed Web of Science ®Google Scholar
• RiegerRLeungPSJeddelohMRIdentification of 2-nonynoic acid, a cosmetic component, as a potential trigger of primary biliary cirrhosisJ Autoimmun200627171616876981
   PubMed Web of Science ®Google Scholar
• PrinsGSEstrogen imprinting: when your epigenetic memories come back to haunt youEndocrinology2008149125919592119022898
   PubMed Web of Science ®Google Scholar
• Guerrero-BosagnaCSabatPValladaresLEnvironmental signaling and evolutionary change: can exposure of pregnant mammals to environmental estrogens lead to epigenetically induced evolutionary changes in embryos?Evol Dev20057434135015982371
   PubMed Web of Science ®Google Scholar
• DolinoyDCWeidmanJRWaterlandRAJirtleRLMaternal genistein alters coat color and protects Avy mouse offspring from obesity by modifying the fetal epigenomeEnviron Health Perspect2006114456757216581547
   PubMed Web of Science ®Google Scholar
• StrohsnitterWCNollerKLTroisiRAutoimmune disease incidence among women prenatally exposed to DiethylstilbestrolJ Rheumatol201037102167217320634240
   PubMed Web of Science ®Google Scholar
• CampesiISannaMZinelluAOral contraceptives modify DNA methylation and monocyte-derived macrophage functionBiol Sex Differ20123422284681
   PubMed Web of Science ®Google Scholar
• HellwigKSchimrigkSBesteCMullerTGoldRIncrease in relapse rate during assisted reproduction technique in patients with multiple sclerosisEur Neurol2009612656819039223
   PubMed Web of Science ®Google Scholar
• KatariSTuranNBibikovaMDNA methylation and gene expression differences in children conceived in vitro or in vivoHum Mol Genet200918203769377819605411
   PubMed Web of Science ®Google Scholar
• van MontfoortAPHanssenLLde SutterPVivilleSGeraedtsJPde BoerPAssisted reproduction treatment and epigenetic inheritanceHum Reprod Update201218217119722267841
   PubMed Web of Science ®Google Scholar
• KriegAMGourleyMFPerlAEndogenous retroviruses: potential etiologic agents in autoimmunityFASEB J199268253725441592206
   PubMed Web of Science ®Google Scholar
• NakkuntodJAvihingsanonYMutiranguraAHirankarnNHypomethylation of LINE-1 but not Alu in lymphocyte subsets of systemic lupus erythematosus patientsClin Chim Acta201141215–161457146121496453
   PubMed Web of Science ®Google Scholar
• IssaJPOttavianoYLCelanoPHamiltonSRDavidsonNEBaylinSBMethylation of the oestrogen receptor CpG island links ageing and neoplasia in human colonNat Genet1994745365407951326
   PubMed Web of Science ®Google Scholar
• SargBKoutzamaniEHelligerWRundquistILindnerHHPostsynthetic trimethylation of histone H4 at lysine 20 in mammalian tissues is associated with agingJ Biol Chem200227742391953920112154089
   PubMed Web of Science ®Google Scholar
• FragaMFBallestarEPazMFEpigenetic differences arise during the lifetime of monozygotic twinsProc Natl Acad Sci U S A200510230106041060916009939
   PubMed Web of Science ®Google Scholar
• BellJTTsaiPCYangTPEpigenome-wide scans identify differentially methylated regions for age and age-related phenotypes in a healthy ageing populationPLoS Genet201284e100262922532803
   PubMed Web of Science ®Google Scholar
• RakyanVKDownTAMaslauSHuman aging-associated DNA hypermethylation occurs preferentially at bivalent chromatin domainsGenome Res201020443443920219945
   PubMed Web of Science ®Google Scholar
• BernsteinBEMikkelsenTSXieXA bivalent chromatin structure marks key developmental genes in embryonic stem cellsCell2006125231532616630819
   PubMed Web of Science ®Google Scholar
• TeschendorffAEMenonUGentry-MaharajAAge-dependent DNA methylation of genes that are suppressed in stem cells is a hallmark of cancerGenome Res201020444044620219944
   PubMed Web of Science ®Google Scholar
• JavierreBMHernandoHBallestarEEnvironmental triggers and epigenetic deregulation in autoimmune diseaseDiscov Med2011126753554522204770
   PubMed Web of Science ®Google Scholar
• EssexMJThomas BoyceWHertzmanCEpigenetic vestiges of early developmental adversity: childhood stress exposure and DNA methylation in adolescenceChild Dev2011 Epub Sep 2.
   Web of Science ®Google Scholar
• WeaverICCervoniNChampagneFAEpigenetic programming by maternal behaviorNat Neurosci20047884785415220929
   PubMed Web of Science ®Google Scholar
• McCarthyMMAugerAPBaleTLThe epigenetics of sex differences in the brainJ Neurosci20092941128151282319828794
   PubMed Web of Science ®Google Scholar
• BestJDCareyNThe epigenetics of normal pregnancyObstet Med2011 Epub Dec 15.
   Google Scholar
• D’hoogheMBNagelsGUitdehaagBMLong-term effects of childbirth in MSJ Neurol Neurosurg Psychiatry2010811384119939856
   PubMed Web of Science ®Google Scholar
• RunmarkerBAndersenOPregnancy is associated with a lower risk of onset and a better prognosis in multiple sclerosisBrain1995118Pt 12532617895009
   PubMed Web of Science ®Google Scholar
• VerdruPTheysPD’HoogheMBCartonHPregnancy and multiple sclerosis: the influence on long term disabilityClinical Neurol Neurosurg19949613841
   Web of Science ®Google Scholar
• GleesonMBishopNCStenselDJLindleyMRMastanaSSNimmoMAThe anti-inflammatory effects of exercise: mechanisms and implications for the prevention and treatment of diseaseNat Rev Immunol201111960761521818123
   PubMed Web of Science ®Google Scholar
• DalgasUStenagerEExercise and disease progression in multiple sclerosis: can exercise slow down the progression of multiple sclerosis?Ther Adv Neurol Disord201252819522435073
   PubMed Web of Science ®Google Scholar
• BarrèsRYanJEganBAcute exercise remodels promoter methylation in human skeletal muscleCell Metab201215340541122405075
   PubMed Web of Science ®Google Scholar
• McGeeSLFairlieEGarnhamAPHargreavesMExercise-induced histone modifications in human skeletal muscleJ Physiol2009587Pt 245951595819884317
   PubMed Web of Science ®Google Scholar
• BallestarEEstellerMRichardsonBCThe epigenetic face of systemic lupus erythematosusJ Immunol2006176127143714716751355
   PubMed Web of Science ®Google Scholar
• LuQWuATesmerLRayDYousifNRichardsonBDemethylation of CD40 LG on the inactive X in T cells from women with lupusJ Immunol200717996352635817947713
   PubMed Web of Science ®Google Scholar
• AlvesNLArosaFAvan LierRACommon gamma chain cytokines: dissidence in the detailsImmunol Lett2007108211312017194484
   PubMed Web of Science ®Google Scholar
• BennettCLChristieJRamsdellFThe immune dysregulation, polyendocrinopathy, enteropathy, X-linked syndrome (IPEX) is caused by mutations of FOXP3Nat Genet2001271202111137993
   PubMed Web of Science ®Google Scholar
• SpurrNKGoodfellowPNDochertyAJChromosomal assignment of the gene encoding the human tissue inhibitor of metalloproteinases to Xp11.1-p11.4Ann Hum Genet198751Pt 31891943688834
   PubMed Web of Science ®Google Scholar
• ZehntnerSPBourbonnièreLMooreCSX-linked inhibitor of apoptosis regulates T cell effector functionJ Immunol2007179117553756018025200
   PubMed Web of Science ®Google Scholar
• Møller-LarsenSNyegaardMHaagerupAVestboJKruseTABørglumADAssociation analysis identifies TLR7 and TLR8 as novel risk genes in asthma and related disordersThorax200863121064106918682521
   PubMed Web of Science ®Google Scholar
• ChitnisSMonteiroJGlassDThe role of X-chromosome inactivation in female predisposition to autoimmunityArthritis Res20002539940611056674
   PubMedGoogle Scholar
• BrixTHKnudsenGPKristiansenMKyvikKOOrstavikKHHegedüsLHigh frequency of skewed X-chromosome inactivation in females with autoimmune thyroid disease: a possible explanation for the female predisposition to thyroid autoimmunityJ Clin Endocrinol Metab.200590115949595316105963
   PubMed Web of Science ®Google Scholar
• OzcelikTUzEAkyerliCBEvidence from autoimmune thyroiditis of skewed X-chromosome inactivation in female predisposition to autoimmunityEur J Hum Genet200614679179716596118
   PubMed Web of Science ®Google Scholar
• OzbalkanZBagişlarSKirazSSkewed X chromosome inactivation in blood cells of women with sclerodermaArthritis Rheum20055251564157015880831
   PubMed Web of Science ®Google Scholar
• HuangQParfittAGrennanDMManoliosNX-chromosome inactivation in monozygotic twins with systemic lupus erythematosusAutoimmunity199726285939546817
   PubMed Web of Science ®Google Scholar
• KnudsenGPGender bias in autoimmune diseases: X chromosome inactivation in women with multiple sclerosisJ Neurol Sci20092861–2434619411081
   PubMed Web of Science ®Google Scholar
• BoyleAPDavisSShulhaHPHigh-resolution mapping and characterization of open chromatin across the genomeCell2008132231132218243105
   PubMed Web of Science ®Google Scholar
• HesselberthJRChenXZhangZGlobal mapping of protein-DNA interactions in vivo by digital genomic footprintingNat Methods20096428328919305407
   PubMed Web of Science ®Google Scholar
• ParkPJChIP-seq: advantages and challenges of a maturing technologyNat Rev Genet2009101066968019736561
   PubMed Web of Science ®Google Scholar
• LairdPWPrinciples and challenges of genomewide DNA methylation analysisNat Rev Genet201011319120320125086
   PubMed Web of Science ®Google Scholar
• BirneyEChromatin and heritability: how epigenetic studies can complement genetic approachesTrends Genet201127517217621414682
   PubMed Web of Science ®Google Scholar
• BarskiACuddapahSCuiKHigh-resolution profiling of histone methylations in the human genomeCell2007129482383717512414
   PubMed Web of Science ®Google Scholar
• CamposEIReinbergDHistones: annotating chromatinAnn Rev Genet20094355959919886812
   PubMed Web of Science ®Google Scholar
• KochCMAndrewsRMFlicekPThe landscape of histone modifications across 1% of the human genome in five human cell linesGenome Res200717669170717567990
   PubMed Web of Science ®Google Scholar
• RosenfeldJAWangZSchonesDEZhaoKDeSalleRZhangMQDetermination of enriched histone modifications in non-genic portions of the human genomeBMC Genomics20091014319335899
   PubMed Web of Science ®Google Scholar
• ZhouVWGorenABernsteinBECharting histone modifications and the functional organization of mammalian genomesNat Rev Genet201112171821116306
   PubMed Web of Science ®Google Scholar
• LennartssonAEkwallKHistone modification patterns and epigenetic codesBiochim Biophys Acta20091790986386819168116
   PubMed Web of Science ®Google Scholar
• HuffJTPlocikAMGuthrieCYamamotoKRReciprocal intronic and exonic histone modification regions in humansNat Struct Mol Biol201017121495149921057525
   PubMed Web of Science ®Google Scholar
• HirstCIngramGPickersgillTSwinglerRCompstonDARobertsonNPIncreasing prevalence and incidence of multiple sclerosis in South East WalesJ Neurol Neurosurg Psychiatry200980438639118931003
   PubMed Web of Science ®Google Scholar
• WeinshenkerBGBassBRiceGPThe natural history of multiple sclerosis: a geographically based study. I. Clinical course and disabilityBrain1989112Pt 11331462917275
   PubMed Web of Science ®Google Scholar
• EbersGCBulmanDESadovnickADA population-based study of multiple sclerosis in twinsN Engl J Med198631526163816423785335
   PubMed Web of Science ®Google Scholar
• WillerCJDymentDARischNJSadovnickADEbersGCThe Canadian Collaborative Study GroupTwin concordance and sibling recurrence rates in multiple sclerosisProc Natl Acad Sci U S A200310022128771288214569025
   PubMed Web of Science ®Google Scholar
• HansenTSkyttheAStenagerEPetersenHCBrønnum-HansenHKyvikKOConcordance for multiple sclerosis in Danish twins: an update of a nationwide studyMult Scler200511550451016193885
   PubMed Web of Science ®Google Scholar
• KuusistoHKaprioJKinnunenELuukkaalaTKoskenvuoMElovaaraIConcordance and heritability of multiple sclerosis in Finland: study on a nationwide series of twinsEur J Neurol200815101106111018727671
   PubMed Web of Science ®Google Scholar
• OstmanJLonnbergGArnqvistHJGender differences and temporal variation in the incidence of type 1 diabetes: results of 8012 cases in the nationwide Diabetes Incidence Study in Sweden 1983–2002J Intern Med2008263438639418205768
   PubMed Web of Science ®Google Scholar
• EatonWWRoseNRKalaydjianAPedersenMGMortensenPBEpidemiology of autoimmune diseases in DenmarkJ Autoimmun20072911917582741
   PubMed Web of Science ®Google Scholar
• KaprioJTuomilehtoJKoskenvuoMConcordance for type 1 (insulin-dependent) and type 2 (non-insulin-dependent) diabetes mellitus in a population-based cohort of twins in FinlandDiabetologia19923511106010671473616
   PubMed Web of Science ®Google Scholar
• MetcalfeKAHitmanGARoweREConcordance for type 1 diabetes in identical twins is affected by insulin genotypeDiabetes Care200124583884211347740
   PubMed Web of Science ®Google Scholar
• KyvikKOGreenABeck-NielsenHConcordance rates of insulin dependent diabetes mellitus: a population based study of young Danish twinsBMJ199531170109139177580548
   PubMed Web of Science ®Google Scholar
• McCartyDJManziSMedsgerTAJrRamsey-GoldmanRLaPorteREKwohCKIncidence of systemic lupus erythematosus. Race and gender differencesArthritis Rheum1995389126012707575721
   PubMed Web of Science ®Google Scholar
• DeapenDEscalanteAWeinribLA revised estimate of twin concordance in systemic lupus erythematosusArthritis Rheum19923533113181536669
   PubMed Web of Science ®Google Scholar
• JärvinenPKaprioJMäkitaloRKoskenvuoMAhoKSystemic lupus erythematosus and related systemic diseases in a nationwide twin cohort: an increased prevalence of disease in MZ twins and concordance of disease featuresJ Intern Med1992231167721732401
   PubMed Web of Science ®Google Scholar
• GrennanDMParfittAManoliosNFamily and twin studies in systemic lupus erythematosusDis Markers199713293989160184
   PubMed Web of Science ®Google Scholar
• GonzalezAMaradit KremersHCrowsonCSThe widening mortality gap between rheumatoid arthritis patients and the general populationArthritis Rheum200756113583358717968923
   PubMed Web of Science ®Google Scholar
• WinchesterRJGenetic aspects of rheumatoid arthritisSpringer Semin Immunopathol198142891026459655
   PubMed Web of Science ®Google Scholar
• AhoKKoskenvuoMTuominenJKaprioJOccurrence of rheumatoid arthritis in a nationwide series of twinsJ Rheumatol19861358999023820198
   PubMed Web of Science ®Google Scholar
• SilmanAJMacGregorAJThomsonWTwin concordance rates for rheumatoid arthritis: results from a nationwide studyBr J Rheumatol199332109039078402000
   PubMedGoogle Scholar
• KrassasGETziomalosKPontikidesNLewyHLaronZSeasonality of month of birth of patients with Graves’ and Hashimoto’s diseases differ from that in the general populationEur J Endocrinol2007156663163617535862
   PubMed Web of Science ®Google Scholar
• BrixTHKyvikKOChristensenKHegedüsLEvidence for a major role of heredity in Graves’ disease: a population-based study of two Danish twin cohortsJ Clin Endocrinol Metab200186293093411158069
   PubMed Web of Science ®Google Scholar
• RingoldDANicoloffJTKeslerMDavisHHamiltonAMackTFurther evidence for a strong genetic influence on the development of autoimmune thyroid disease: the California twin studyThyroid200212864765312225632
   PubMed Web of Science ®Google Scholar
• KaplanMMGershwinMEPrimary biliary cirrhosisN Engl J Med2005353121261127316177252
   PubMed Web of Science ®Google Scholar
• SelmiCMayoMJBachNPrimary biliary cirrhosis in monozygotic and dizygotic twins: genetics, epigenetics, and environmentGastroenterology2004127248549215300581
   PubMed Web of Science ®Google Scholar
• NaldiLChatenoudLBelloniAMedical history, drug exposure and the risk of psoriasis. Evidence from an Italian case-control studyDermatology2008216212513018216474
   PubMed Web of Science ®Google Scholar
• DuffyDLSpelmanLSMartinNGPsoriasis in Australian twinsJ Am Acad Dermatol19932934284348349859
   PubMed Web of Science ®Google Scholar
• KruegerGGDuvicMEpidemiology of psoriasis: clinical issuesJ Invest Dermatol1994102614S18S8006427
   PubMed Web of Science ®Google Scholar
• MantegazzaRBaggiFAntozziCMyasthenia gravis (MG): epidemiological data and prognostic factorsAnn N Y Acad Sci200399841342314592909
   PubMed Web of Science ®Google Scholar
• RamanujamRPirskanenRRamanujamSHammarströmLUtilizing twins concordance rates to infer the predisposition to myasthenia gravisTwin Res Hum Genet201114212913621425894
   PubMed Web of Science ®Google Scholar
• WillREdmundsLElswoodJCalinAIs there sexual inequality in ankylosing spondylitis? A study of 498 women and 1202 menJ Rheumatol19901712164916522084239
   PubMed Web of Science ®Google Scholar
• PedersenOBSvendsenAJEjstrupLSkyttheAHarrisJRJunkerPAnkylosing spondylitis in Danish and Norwegian twins: occurrence and the relative importance of genetic vs environmental effectors in disease causationScand J Rheumatol200837212012618415769
   PubMed Web of Science ®Google Scholar
• BaladaEOrdi-RosJVilardell-TarrésMDNA methylation and systemic lupus erythematosusAnn N Y Acad Sci2007110812713617893979
   PubMed Web of Science ®Google Scholar
• RenaudineauYYouinouPEpigenetics and autoimmunity, with special emphasis on methylationKeio J Med2011601101621460598
   PubMedGoogle Scholar
• ZoualiMEpigenetics in lupusAnn N Y Acad Sci2011121715416521251010
   PubMed Web of Science ®Google Scholar
• GaraudSLe DantecCJousse-JoulinSIL-6 modulates CD5 expression in B cells from patients with lupus by regulating DNA methylationJ Immunol200918295623563219380809
   PubMed Web of Science ®Google Scholar
• PauleyKMSatohMChanALBubbMRReevesWHChanEKUpregulated miR-146a expression in peripheral blood mononuclear cells from rheumatoid arthritis patientsArthritis Res Ther2008104R10118759964
   PubMed Web of Science ®Google Scholar
• HuNQiuXLuoYAbnormal histone modification patterns in lupus CD4+ T cellsJ Rheumatol200835580481018398941
   PubMed Web of Science ®Google Scholar
• LuoYLiYSuYAbnormal DNA methylation in T cells from patients with subacute cutaneous lupus erythematosusBr J Dermatol2008159482783318644019
   PubMed Web of Science ®Google Scholar
• LeiWLuoYLeiWAbnormal DNA methylation in CD4+ T cells from patients with systemic lupus erythematosus, systemic sclerosis, and dermatomyositisScand J Rheumatol200938536937419444718
   PubMed Web of Science ®Google Scholar
• SunahoriKJuangYTKyttarisVCTsokosGCPromoter hypomethylation results in increased expression of protein phosphatase 2A in T cells from patients with systemic lupus erythematosusJ Immunol201118674508451721346232
   PubMed Web of Science ®Google Scholar
• JanuchowskiRWudarskiMChwalińska-SadowskaHJagodzinskiPPPrevalence of ZAP-70, LAT, SLP-76, and DNA methyltransferase 1 expression in CD4+ T cells of patients with systemic lupus erythematosusClin Rheumatol2008271212717492476
   PubMed Web of Science ®Google Scholar
• YinHZhaoMWuXHypomethylation and overexpression of CD70 (TNFSF7) in CD4+ T cells of patients with primary Sjögren’s syndromeJ Dermatol Sci201059319820320724115
   PubMed Web of Science ®Google Scholar
• JiangHXiaoRLianXDemethylation of TNFSF7 contributes to CD70 overexpression in CD4+ T cells from patients with systemic sclerosisClin Immunol20121431394422306512
   PubMed Web of Science ®Google Scholar
• LiuYChenYRichardsonBDecreased DNA methyltransferase levels contribute to abnormal gene expression in “senescent” CD4(+) CD28(−) T cellsClin Immunol2009132225726519394279
   PubMed Web of Science ®Google Scholar
• FulciVScappucciGSebastianiGDmiR-223 is overexpressed in T-lymphocytes of patients affected by rheumatoid arthritisHum Immunol201071220621119931339
   PubMed Web of Science ®Google Scholar
• JansonPCLintonLBBergmanEAProfiling of CD4+ T Cells with epigenetic immune lineage analysisJ Immunol201118619210221131423
   PubMed Web of Science ®Google Scholar
• JunkerAPathophysiology of translational regulation by microRNAs in multiple sclerosisFEBS Letters2011585233738374621453702
   PubMed Web of Science ®Google Scholar
• LleoALiaoJInvernizziPImmunoglobulin M levels inversely correlate with CD40 ligand promoter methylation in patients with primary biliary cirrhosisHepatology201255115316021898485
   PubMed Web of Science ®Google Scholar
• LuQWuARayDDNA methylation and chromatin structure regulate T cell perforin gene expressionJ Immunol2003170105124513212734359
   PubMed Web of Science ®Google Scholar
• DaiYHuangYSTangMMicroarray analysis of microRNA expression in peripheral blood cells of systemic lupus erythematosus patientsLupus2007161293994618042587
   PubMed Web of Science ®Google Scholar
• MiaoFSmithDDZhangLMinAFengWNatarajanRLymphocytes from patients with type 1 diabetes display a distinct profile of chromatin histone H3 lysine 9 dimethylation: an epigenetic study in diabetesDiabetes200857123189319818776137
   PubMed Web of Science ®Google Scholar
• van BavelCCDiekerJMullerSApoptosis-associated acetylation on histone H2B is an epitope for lupus autoantibodiesMol Immunol2009472–351151619747733
   PubMed Web of Science ®Google Scholar
• NakasaTMiyakiSOkuboAExpression of microRNA-146 in rheumatoid arthritis synovial tissueArthritis Rheum20085851284129218438844
   PubMed Web of Science ®Google Scholar
• StanczykJOspeltCKarouzakisEAltered expression of microRNA-203 in rheumatoid arthritis synovial fibroblasts and its role in fibroblast activationArthritis Rheum201163237338121279994
   PubMed Web of Science ®Google Scholar
• TakamiNOsawaKMiuraYHypermethylated promoter region of DR3, the death receptor 3 gene, in rheumatoid arthritis synovial cellsArthritis Rheum200654377978716508942
   PubMed Web of Science ®Google Scholar
• Sánchez-PernauteOOspeltCNeidhartMGaySEpigenetic clues to rheumatoid arthritisJ Autoimmun2008301–2122018155418
   PubMed Web of Science ®Google Scholar
• PadgettKALanRYLeungPCPrimary biliary cirrhosis is associated with altered hepatic microRNA expressionJ Autoimmun2009323–424625319345069
   PubMed Web of Science ®Google Scholar
• AlevizosIIlleiGGMicroRNAs in Sjögren’s syndrome as a prototypic autoimmune diseaseAutoimmun Rev20109961862120457282
   PubMed Web of Science ®Google Scholar
• JoyceCEZhouXXiaJDeep sequencing of small RNAs from human skin reveals major alterations in the psoriasis miRNAomeHum Mol Genet201120204025404021807764
   PubMed Web of Science ®Google Scholar
• RobersonEDLiuYRyanCA subset of methylated CpG sites differentiate psoriatic from normal skinJ Invest Dermatol20121323 Pt 158359222071477
   PubMed Web of Science ®Google Scholar
• RuchusatsawatKWongpiyabovornJShuangshotiSHirankarnNMutiranguraASHP-1 promoter 2 methylation in normal epithelial tissues and demethylation in psoriasisJ Mol Med (Berl)200684217518216389548
   PubMed Web of Science ®Google Scholar
• HuynhJLCasacciaPDefining the chromatin landscape in demyelinating disordersNeurobiol Dis2010391475219853663
   PubMed Web of Science ®Google Scholar
• KuboMCzuwara-LadykowskaJMoussaOPersistent downregulation of Fli1, a suppressor of collagen transcription, in fibrotic scleroderma skinAm J Pathol2003163257158112875977
   PubMed Web of Science ®Google Scholar
• LugerKMäderAWRichmondRKSargentDFRichmondTJCrystal structure of the nucleosome core particle at 2.8 A resolutionNature199738966482512609305837
   PubMed Web of Science ®Google Scholar