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Original Research

A network-based signature to predict the survival of non-smoking lung adenocarcinoma

, , , , , , , , , & show all
Pages 2683-2693 | Published online: 16 Aug 2018

References

  • StilesBMRahoumaMHusseinMKNever smokers with resected lung cancer: different demographics, similar survivalEur J Cardiothorac Surg201853484284829182735
  • ChoJChoiSMLeeJProportion and clinical features of never-smokers with non-small cell lung cancerChin J Cancer20173612028179026
  • ThuKLVucicEAChariRLung adenocarcinoma of never smokers and smokers harbor differential regions of genetic alteration and exhibit different levels of genomic instabilityPLoS One201273e3300322412972
  • SongMABenowitzNLBermanMCigarette Filter Ventilation and its Relationship to Increasing Rates of Lung AdenocarcinomaJ Natl Cancer Inst201710912
  • DongYLiYJinBPathologic subtype-defined prognosis is dependent on both tumor stage and status of oncogenic driver mutations in lung adenocarcinomaOncotarget2017847822448225529137260
  • ClarkeCMaddenSFDoolanPCorrelating transcriptional networks to breast cancer survival: a large-scale coexpression analysisCarcinogenesis201334102300230823740839
  • SunQZhaoHZhangCGene co-expression network reveals shared modules predictive of stage and grade in serous ovarian cancersOncotarget2017826429834299628562334
  • LiuRZhangWLiuZQZhouHHAssociating transcriptional modules with colon cancer survival through weighted gene co-expression network analysisBMC Genomics201718136128486948
  • GautierLCopeLBolstadBMIrizarryRAFauCLFauBBIrizarryRAaffy–analysis of Affymetrix GeneChip data at the probe levelBioinformatics200420330731514960456
  • RitchieMEPhipsonBWuDlimma powers differential expression analyses for RNA-sequencing and microarray studiesNucleic Acids Res2015437e47e4725605792
  • RobinsonMDMccarthyDJSmythGKedgeR: a Bioconductor package for differential expression analysis of digital gene expression dataBioinformatics201026113914019910308
  • WickhamHggplot2: Elegant Graphics for Data AnalysisSpringerVerlagNew York2009
  • YuGWangLGHanYHeQYclusterProfiler: an R package for comparing biological themes among gene clustersOMICS201216528428722455463
  • ShannonPMarkielAOzierOCytoscape: a software environment for integrated models of biomolecular interaction networksGenome Res200313112498250414597658
  • LangfelderPHorvathSWGCNA: an R package for weighted correlation network analysisBMC Bioinformatics20089155919114008
  • LandiMTDrachevaTRotunnoMGene expression signature of cigarette smoking and its role in lung adenocarcinoma development and survivalPLoS One200832e165118297132
  • YamauchiMYamaguchiRNakataAEpidermal growth factor receptor tyrosine kinase defines critical prognostic genes of stage I lung adenocarcinomaPLoS One201279e4392323028479
  • SeoJSJuYSLeeWCThe transcriptional landscape and mutational profile of lung adenocarcinomaGenome Res201222112109211922975805
  • SheddenKTaylorJMGEnkemannSAGene Expression-Based Survival Prediction in Lung Adenocarcinoma: A Multi-Site, Blinded Validation Study: Director’s Challenge Consortium for the Molecular Classification of Lung AdenocarcinomaNat Med200814882282718641660
  • derSDSykesJPintilieMValidation of a histology-independent prognostic gene signature for early-stage, non-small-cell lung cancer including stage IA patientsJ Thorac Oncol201491596424305008
  • LuTPTsaiMHLeeJMIdentification of a novel biomarker, SEMA5A, for non-small cell lung carcinoma in nonsmoking womenCancer Epidemiol Biomarkers Prev201019102590259720802022
  • SunSSchillerJHGazdarAFLung cancer in never smokers--a different diseaseNat Rev Cancer200771077879017882278
  • GouL-YNiuF-YY-LWZhongW-ZDifferences in driver genes between smoking-related and non–smoking-related lung cancer in the Chinese populationCancer2015121S173069307926331813
  • YanoTMiuraNTakenakaTNever-smoking nonsmall cell lung cancer as a separate entityCancer200811351012101818618510
  • ZhangJBaddooMHanCGene network analysis reveals a novel 22-gene signature of carbon metabolism in hepatocellular carcinomaOncotarget2016731492324924527363021
  • ZhaoXCaiHWangXMaLDiscovery of signature genes in gastric cancer associated with prognosisNeoplasma201663223924526774142
  • WuCZhuJZhangXNetwork-based differential gene expression analysis suggests cell cycle related genes regulated by E2F1 underlie the molecular difference between smoker and non-smoker lung adenocarcinomaBMC Bioinformatics201314136524341432
  • ZhangLLiJLvXGuoTLiWZhangJMID1-PP2A complex functions as new insights in human lung adenocarcinomaJ Cancer Res Clin Oncol2018144585586429450633
  • ChenPHChangHChangJTLinPAryl hydrocarbon receptor in association with RelA modulates IL-6 expression in non-smoking lung cancerOncogene201131255521996739
  • Zhou MyWCuiHWangNIdentification of potential therapeutic target genes and mechanisms in non-small-cell lung carcinoma in non-smoking women based on bioinformatics analysisEur Rev Med Pharmacol Sci201519183375338426439031
  • PengFWangRZhangYDifferential expression analysis at the individual level reveals a lncRNA prognostic signature for lung adenocarcinomaMol Cancer20171619828587642
  • KinoshitaTKudo-SaitoCMuramatsuRDetermination of poor prognostic immune features of tumour microenvironment in non-smoking patients with lung adenocarcinomaEur J Cancer201786152728950145
  • ShiYXYinJYShenYZhangWZhouHHLiuZQGenome-scale analysis identifies NEK2, DLGAP5 and ECT2 as promising diagnostic and prognostic biomarkers in human lung cancerSci Rep201771807228808310
  • BidkhoriGNarimaniZHosseini AshtianiSMoeiniANowzari-DaliniAMasoudi-NejadAReconstruction of an Integrated Genome-Scale Co-Expression Network Reveals Key Modules Involved in Lung AdenocarcinomaPLoS ONE201387e6755223874428
  • OrthMUngerKSchoetzUBelkaCLauberKTaxane-mediated radiosensitization derives from chromosomal missegregation on tripolar mitotic spindles orchestrated by AURKA and TPX2Oncogene2018371526228869599
  • RichardsKLZhangBSunMMethylation of the Candidate Biomarker TCF21 Is Very Frequent Across A Spectrum of Early Stage Non-Small Cell Lung CancersCancer2011117360661720945327
  • ChenHNYuanKXieNPDLIM1 Stabilizes the E-Cadherin/β-Catenin Complex to Prevent Epithelial-Mesenchymal Transition and Metastatic Potential of Colorectal Cancer CellsCancer Res20167651122113426701804
  • ChuSHHuangYTIntegrated genomic analysis of biological gene sets with applications in lung cancer prognosisBMC Bioinformatics201718133628697753
  • ShuklaSEvansJRMalikRDevelopment of a RNA-Seq Based Prognostic Signature in Lung AdenocarcinomaJ Natl Cancer Inst20171091djw200
  • LiYSunNLuZPrognostic alternative mRNA splicing signature in non-small cell lung cancerCancer Letters2017393Supplement C405128223168
  • ZhaoYVarnFSCaiGXiaoFAmosCIChengCA P53-Deficiency Gene Signature Predicts Recurrence Risk of Patients with Early- Stage Lung AdenocarcinomaCancer Epidemiol Biomarkers Prev2018271869529141854
  • ChaudharyKPoirionOBLuLGarmireLXDeep Learning-Based Multi-Omics Integration Robustly Predicts Survival in Liver CancerClin Cancer Res20182461248125928982688