Identification and Validation of Autophagy-Related Genes in Chronic Obstructive Pulmonary Disease

References

• Rabe KF, Watz H. Chronic obstructive pulmonary disease. Lancet. 2017;389(10082):1931–1940. doi:10.1016/S0140-6736(17)31222-9
   PubMed Web of Science ®Google Scholar
• Silvestri GA, Young RP. Strange bedfellows: the interaction between COPD and lung cancer in the context of lung cancer screening. Ann Am Thorac Soc. 2020;17(7):810–812. doi:10.1513/AnnalsATS.202005-433ED
   PubMed Web of Science ®Google Scholar
• Yuan C, Chang D, Lu G, Deng X. Genetic polymorphism and chronic obstructive pulmonary disease. Int J Chronic Obstr. 2017;12:1385–1393.
   PubMed Web of Science ®Google Scholar
• Hikichi M, Mizumura K, Maruoka S, Gon Y. Pathogenesis of chronic obstructive pulmonary disease (COPD) induced by cigarette smoke. J Thorac Dis. 2019;11(Suppl S17):S2129–S2140. doi:10.21037/jtd.2019.10.43
   PubMedGoogle Scholar
• Csoma B, Bikov A, Nagy L, et al. Dysregulation of the endothelial nitric oxide pathway is associated with airway inflammation in COPD. Resp Res. 2019;20(1):156. doi:10.1186/s12931-019-1133-8
   PubMed Web of Science ®Google Scholar
• Zheng M, Hong W, Gao M, et al. Long noncoding RNA COPDA1 promotes airway smooth muscle cell proliferation in chronic obstructive pulmonary disease. Am J Resp Cell Mol. 2019;61(5):584–596. doi:10.1165/rcmb.2018-0269OC
   PubMed Web of Science ®Google Scholar
• Zong D, Li J, Cai S, et al. Notch1 regulates endothelial apoptosis via the ERK pathway in chronic obstructive pulmonary disease. Am J Physiol Cell Physiol. 2018;315(3):C330–C340. doi:10.1152/ajpcell.00182.2017
   PubMed Web of Science ®Google Scholar
• Gouzi F, Blaquière M, Catteau M, et al. Oxidative stress regulates autophagy in cultured muscle cells of patients with chronic obstructive pulmonary disease. J Cell Physiol. 2018;233(12):9629–9639. doi:10.1002/jcp.26868
   PubMed Web of Science ®Google Scholar
• Galluzzi L, Baehrecke EH, Ballabio A, et al. Molecular definitions of autophagy and related processes. EMBO J. 2017;36(13):1811–1836. doi:10.15252/embj.201796697
   PubMed Web of Science ®Google Scholar
• Huang T, Wan X, Alvarez AA, et al. MIR93 (microRNA −93) regulates tumorigenicity and therapy response of glioblastoma by targeting autophagy. Autophagy. 2019;15(6):1100–1111. doi:10.1080/15548627.2019.1569947
   PubMed Web of Science ®Google Scholar
• Xia F, Deng C, Jiang Y, et al. IL4 (interleukin 4) induces autophagy in B cells leading to exacerbated asthma. Autophagy. 2018;14(3):450–464. doi:10.1080/15548627.2017.1421884
   PubMed Web of Science ®Google Scholar
• Zhang F, Ma H, Wang ZL, Li WH, Liu H, Zhao YX. The PI3K/AKT/mTOR pathway regulates autophagy to induce apoptosis of alveolar epithelial cells in chronic obstructive pulmonary disease caused by PM2.5 particulate matter. J Int Med Res. 2020;48(7):1220727471.
   Web of Science ®Google Scholar
• Ezzie ME, Crawford M, Cho JH, et al. Gene expression networks in COPD: microRNA and mRNA regulation. Thorax. 2012;67(2):122–131. doi:10.1136/thoraxjnl-2011-200089
   PubMed Web of Science ®Google Scholar
• Lv X, Li K, Hu Z. Chronic obstructive pulmonary disease and autophagy. Adv Exp Med Biol. 2020;1207:559–567.
   PubMed Web of Science ®Google Scholar
• Wu Y, Xu B, He X, et al. Correlation between autophagy levels in peripheral blood mononuclear cells and clinical parameters in patients with chronic obstructive pulmonary disease. Mol Med Rep. 2018;17(6):8003–8009. doi:10.3892/mmr.2018.8831
   PubMed Web of Science ®Google Scholar
• Dang X, Qu X, Wang W, et al. Bioinformatic analysis of microRNA and mRNA Regulation in peripheral blood mononuclear cells of patients with chronic obstructive pulmonary disease. Resp Res. 2017;18(1):4. doi:10.1186/s12931-016-0486-5
   PubMed Web of Science ®Google Scholar
• Chen S, Yao Y, Lu S, et al. CircRNA0001859, a new diagnostic and prognostic biomarkers for COPD and AECOPD. BMC Pulm Med. 2020;20(1):311. doi:10.1186/s12890-020-01333-1
   PubMed Web of Science ®Google Scholar
• Wang SS, Chen G, Li SH, et al. Identification and validation of an individualized autophagy-clinical prognostic index in bladder cancer patients. Oncotargets Ther. 2019;12:3695–3712. doi:10.2147/OTT.S197676
   PubMed Web of Science ®Google Scholar
• Wang X, Yao S, Xiao Z, et al. Development and validation of a survival model for lung adenocarcinoma based on autophagy-associated genes. J Transl Med. 2020;18(1):149. doi:10.1186/s12967-020-02321-z
   PubMed Web of Science ®Google Scholar
• Yang H, Han M, Li H. Construction and validation of an autophagy-related prognostic risk signature for survival predicting in clear cell renal cell carcinoma patients. Front Oncol. 2020;10:707. doi:10.3389/fonc.2020.00707
   PubMed Web of Science ®Google Scholar
• Ding Q, Sun S, Zhang Y, et al. Serum IL-8 and VEGFA are two promising diagnostic biomarkers of asthma-COPD overlap syndrome. Int J Chronic Obstr. 2020;15:357–365.
   PubMed Web of Science ®Google Scholar
• Taka C, Hayashi R, Shimokawa K, et al. SIRT1 and FOXO1 mRNA expression in PBMC correlates to physical activity in COPD patients. Int J Chronic Obstr. 2017;12:3237–3244.
   PubMed Web of Science ®Google Scholar
• Zeng Z, He S, Lu J, et al. MicroRNA-21 aggravates chronic obstructive pulmonary disease by promoting autophagy. Exp Lung Res. 2018;44(2):89–97. doi:10.1080/01902148.2018.1439548
   PubMed Web of Science ®Google Scholar
• Wen W, Yu G, Liu W, et al. Silencing FUNDC1 alleviates chronic obstructive pulmonary disease by inhibiting mitochondrial autophagy and bronchial epithelium cell apoptosis under hypoxic environment. J Cell Biochem. 2019;120(10):17602–17615. doi:10.1002/jcb.29028
   PubMed Web of Science ®Google Scholar
• Wang L, Tang Y, Chen Y. HIF1A gene rs10873142 polymorphism is associated with risk of chronic obstructive pulmonary disease in a Chinese Han population: a case-control study. Biosci Rep. 2018;38(2).
   Web of Science ®Google Scholar
• Yang D, Yan Y, Hu F, Wang T. CYP1B1, VEGFA, BCL2, and CDKN1A affect the development of chronic obstructive pulmonary disease. Int J Chron Obstruct Pulmon Dis. 2020;15:167–175. doi:10.2147/COPD.S220675
   PubMed Web of Science ®Google Scholar
• Zhang Y, Wang JH, Lu Q, Wang YJ. Bag3 promotes resistance to apoptosis through Bcl-2 family members in non-small cell lung cancer. Oncol Rep. 2012;27(1):109–113. doi:10.3892/or.2011.1486
   PubMed Web of Science ®Google Scholar
• Wang SP, Li W, Li C, Duan XY, Duan J. Effect of rs4719839 polymorphism on risk of ventilator-associated pneumonia, expression of microRNA-148 and autophagy-related 16-like 1 (ATG16L1). J Cell Mol Med. 2020.
   Web of Science ®Google Scholar
• Cui Y, Li F, Xie Q, et al. YBX1 mediates autophagy by targeting p110β and decreasing the sensitivity to cisplatin in NSCLC. Cell Death Dis. 2020;11(6):476. doi:10.1038/s41419-020-2555-4
   PubMed Web of Science ®Google Scholar
• Li BB, Chen YL, Pang F. MicroRNA-30a targets ATG5 and attenuates airway fibrosis in asthma by suppressing autophagy. Inflammation. 2020;43(1):44–53. doi:10.1007/s10753-019-01076-0
   PubMed Web of Science ®Google Scholar
• Chen Y, Zhang H, Li F, Wang X. Inhibition of CX3C receptor 1-mediated autophagy in macrophages alleviates pulmonary fibrosis in hyperoxic lung injury. Life Sci. 2020;259:118286. doi:10.1016/j.lfs.2020.118286
   PubMed Web of Science ®Google Scholar