TNF-α (−308) Gene Polymorphism and Type 2 Diabetes Mellitus in Ethiopian Diabetes Patients

References

• Banerjee M , Vats P . Reactive metabolites and antioxidant gene polymorphisms in type 2 diabetes mellitus. Redox Biol . 2014;2:170–177. doi:10.1016/j.redox.2013.12.001 25460725
   PubMed Web of Science ®Google Scholar
• Kasper F , Longo H . Harrisons Principle of Internal Medicine 19th Edition . McGraw-Hill Education;2015:3167–3216. (ISBN: 978-0-07-180215-4).
   Google Scholar
• WHO. Global Report on Diabetes . World Health Organization; 2016 Available from: https://apps.who.int/iris/bitstream/10665/204871/1/9789241565257_eng.pdf.
   Google Scholar
• WHO. Diabetes country profiles 2016 Available from: https://www.who.int/diabetes/country-profiles/en/.
   Google Scholar
• Levitt NS . Diabetes in Africa: epidemiology, management and healthcare challenges. Heart . 2008;94(11):1376–1382. doi:10.1136/hrt.2008.147306 18519551
   PubMed Web of Science ®Google Scholar
• Nigatu T . Epidemiology, complications and management of diabetes in Ethiopia: a systematic review. J Diabetes . 2012;4(2):174–180. doi:10.1111/jdb.2012.4.issue-2 22212307
   PubMed Web of Science ®Google Scholar
• Chen L , Magliano DJ , Zimmet PZ . The worldwide epidemiology of type 2 diabetes mellitus—present and future perspectives. Nat Rev Endocrinol . 2011;8(4):nrendo.2011.183.
   Web of Science ®Google Scholar
• Samsom M , Trivedi T , Orekoya O , Vyas S . Understanding the importance of gene and environment in the etiology and prevention of type 2 diabetes mellitus in high-risk populations. Oral Health Case Rep . 2016;2(1).
   Google Scholar
• Sami W , Ansari T , Butt NS , Ab Hamid MR . Effect of diet on type 2 diabetes mellitus: a review. Int J Health Sci . 2017;11(2):65.
   PubMedGoogle Scholar
• Kolb H , Mandrup-Poulsen T . An immune origin of type 2 diabetes? Diabetologia . 2005;48(6):1038–1050. doi:10.1007/s00125-005-1764-9 15864529
   PubMed Web of Science ®Google Scholar
• Hollegaard M , Bidwell J . Cytokine gene polymorphism in human disease: on-line databases, supplement 3. Genes Immun . 2006;7(4):269–276. doi:10.1038/sj.gene.6364301 16642032
   PubMed Web of Science ®Google Scholar
• Banerjee M , Saxena M . Genetic polymorphisms of cytokine genes in type 2 diabetes mellitus. World J Diabetes . 2014;5(4):493. doi:10.4239/wjd.v5.i4.493 25126395
   PubMedGoogle Scholar
• Baud V , Karin M . Signal transduction by tumor necrosis factor and its relatives. Trends Cell Biol . 2001;11(9):372–377. doi:10.1016/S0962-8924(01)02064-5 11514191
   PubMed Web of Science ®Google Scholar
• Locksley RM , Killeen N , Lenardo MJ . The TNF and TNF receptor superfamilies: integrating mammalian biology. Cell . 2001;104(4):487–501. doi:10.1016/S0092-8674(01)00237-9 11239407
   PubMed Web of Science ®Google Scholar
• Levine SJ , Larivee P , Logun C , Angus CW , Ognibene FP , Shelhamer JH . Tumor necrosis factor-alpha induces mucin hypersecretion and MUC-2 gene expression by human airway epithelial cells. Am J Respir Cell Mol Biol . 1995;12(2):196–204. doi:10.1165/ajrcmb.12.2.7865217 7865217
   PubMed Web of Science ®Google Scholar
• Pociot F , Wilson AG , Nerup J , Duff GW . No independent association between a tumor necrosis factor‐α promotor region polymorphism and insulin‐dependent diabetes mellitus. Eur J Immunol . 1993;23(11):3050–3053. doi:10.1002/(ISSN)1521-4141 8223882
   PubMed Web of Science ®Google Scholar
• Hayden MS , Ghosh S . Regulation of NF-κB by TNF family cytokines. Semin Immunol . 2014;26(3):253–266.24958609
   PubMed Web of Science ®Google Scholar
• Liu T , Zhang L , Joo D , Sun S-C . NF-κB signaling in inflammation. Signal Transduct Target Ther . 2017;2:17023. doi:10.1038/sigtrans.2017.23 29158945
   PubMed Web of Science ®Google Scholar
• Skolnik EY , Marcusohn J . Inhibition of insulin receptor signaling by TNF: potential role in obesity and non-insulin-dependent diabetes mellitus. Cytokine Growth Factor Rev . 1996;7(2):161–173. doi:10.1016/1359-6101(96)00021-4 8899294
   PubMedGoogle Scholar
• Kanety H , Feinstein R , Papa MZ , Hemi R , Karasik A . Tumor necrosis factor α-induced phosphorylation of insulin receptor substrate-1 (IRS-1) possible mechanism for suppression of insulin-stimulated tyrosine phosphorylation of IRS-1. J Biol Chem . 1995;270(40):23780–23784. doi:10.1074/jbc.270.40.23780 7559552
   PubMed Web of Science ®Google Scholar
• Ishizuka K , Usui I , Kanatani Y , et al. Chronic tumor necrosis factor-α treatment causes insulin resistance via insulin receptor substrate-1 serine phosphorylation and suppressor of cytokine signaling-3 induction in 3T3-L1 adipocytes. Endocrinology . 2007;148(6):2994–3003. doi:10.1210/en.2006-1702 17379643
   PubMed Web of Science ®Google Scholar
• Saxena M , Srivastava N , Banerjee M . Association of IL-6, TNF-α and IL-10 gene polymorphisms with type 2 diabetes mellitus. Mol Biol Rep . 2013;40(11):6271–6279. doi:10.1007/s11033-013-2739-4 24057184
   PubMed Web of Science ®Google Scholar
• Dalziel B , Gosby AK , Richman RM , Bryson JM , Caterson ID . Association of the TNF‐α− 308 G/A promoter polymorphism with insulin resistance in obesity. Obesity Res . 2002;10(5):401–407. doi:10.1038/oby.2002.55
   PubMedGoogle Scholar
• Patel S , Santani D . Role of NF-κB in the pathogenesis of diabetes and its associated complications. Pharmacol Rep . 2009;61(4):595–603. doi:10.1016/S1734-1140(09)70111-2 19815941
   PubMed Web of Science ®Google Scholar
• Fernandez-Real J , Gutierrez C , Ricart W , et al. The TNF-α Gene Neo I polymorphism influences the relationship among insulin resistance, percent body fat, and increased serum leptin levels. Diabetes . 1997;46(9):1468–1472. doi:10.2337/diab.46.9.1468 9287048
   PubMed Web of Science ®Google Scholar
• Luna GI , Silva I , Sanchez MN . Association between-308G/A TNFA polymorphism and susceptibility to type 2 diabetes mellitus: a systematic review. J Diabetes Res . 2016;2016.
   Web of Science ®Google Scholar
• WHO. Definition and Diagnosis of Diabetes Mellitus and Intermediate Hyperglycaemia: Report of a WHO/IDF Consultation ; 2006 Available from: https://apps.who.int/iris/handle/10665/43588.
   Google Scholar
• Gaaib JN , Nassief AF , Al-Assi A . Simple salting-out method for genomic DNA extraction from whole blood. Tikrit J Pure Sci . 2011;16(2):1813–2662.
   Google Scholar
• Wang T , Wang L , Zhang J , Dong W . A simplified universal genomic DNA extraction protocol suitable for PCR. Genet Mol Res . 2011;10(1):519–525. doi:10.4238/vol10-1gmr1055 21476197
   PubMed Web of Science ®Google Scholar
• Aljanabi SM , Martinez I . Universal and rapid salt-extraction of high quality genomic DNA for PCR-based techniques. Nucleic Acids Res . 1997;25(22):4692–4693. doi:10.1093/nar/25.22.4692 9358185
   PubMed Web of Science ®Google Scholar
• Desjardins P , Conklin D . NanoDrop microvolume quantitation of nucleic acids. J Vis Exp . 2010;45:e2565.
   Google Scholar
• Trejaut J , Tsai ZU , Lee HL , et al. Cytokine gene polymorphisms in Taiwan. Tissue Antigens . 2004;64(4):492–499. doi:10.1111/j.1399-0039.2004.00287.x 15361128
   PubMedGoogle Scholar
• Kammoun H , Kraakman M , Febbraio M . Adipose tissue inflammation in glucose metabolism. Rev Endocr Metab Disord . 2014;15(1):31–44. doi:10.1007/s11154-013-9274-4 24048715
   PubMed Web of Science ®Google Scholar
• Rodrigues K , Pietrani N , Sandrim V , et al. Association of a large panel of cytokine gene polymorphisms with complications and comorbidities in type 2 diabetes patients. J Diabetes Res . 2015;2015.
   Web of Science ®Google Scholar
• Yoshioka K , Yoshida T , Takakura Y , et al. Relationship between polymorphisms 804C/A and 252A/G of lymphotoxin-α gene and− 308G/A of tumor necrosis factor α gene and diabetic retinopathy in Japanese patients with type 2 diabetes mellitus. Metabolism . 2006;55(10):1406–1410. doi:10.1016/j.metabol.2006.06.012 16979413
   PubMed Web of Science ®Google Scholar
• Bidwell J , Keen L , Gallagher G , et al. Cytokine gene polymorphism in human disease: on-line databases, supplement 1. Genes Immun . 2001;2(2):61. doi:10.1038/sj.gene.6363733 11393658
   PubMed Web of Science ®Google Scholar
• Sookoian SC , González C , Pirola CJ . Meta‐analysis on the G‐308A tumor necrosis factor α gene variant and phenotypes associated with the metabolic syndrome. Obes Res . 2005;13(12):2122–2131. doi:10.1038/oby.2005.263 16421346
   PubMedGoogle Scholar
• Um J-Y , An N-H , Kim H-M . TNF-α and TNF-β gene polymorphisms in cerebral infarction. J Mol Neurosci . 2003;21(2):167–171. doi:10.1385/JMN:21:2:167 14593215
   PubMed Web of Science ®Google Scholar
• Wu W-S , McCLAIN KL . DNA polymorphisms and mutations of the tumor necrosis factor-α (TNF-α) promoter in Langerhans cell histiocytosis (LCH). Int J Interferon Cytokine Res . 1997;17(10):631–635. doi:10.1089/jir.1997.17.631
   Web of Science ®Google Scholar
• Braun N , Michel U , Ernst BP , et al. Gene polymorphism at position −308 of the tumor-necrosis-factor-alpha (TNF-alpha) in multiple sclerosis and it’s influence on the regulation of TNF-alpha production. Neurosci Lett . 1996;215(2):75–78.8887999
   PubMed Web of Science ®Google Scholar
• Wilson AG , Symons JA , McDowell TL , et al. Effects of a polymorphism in the human TNF alpha promoter on transcriptional activation. Proc Natl Acad Sci U S A . 1997;94(7):3195–3199. doi:10.1073/pnas.94.7.3195 9096369
   PubMed Web of Science ®Google Scholar
• Chen X , Xun K , Chen L , Wang Y . TNF alpha, a potent lipid metabolism regulator. Cell Biochem Funct . 2009;27(7):407–416. doi:10.1002/cbf.1596 19757404
   PubMed Web of Science ®Google Scholar
• Mirhafez SR , Avan A , Pasdar A , et al. Association of TNF alpha promoter G-308A gene polymorphism with increased triglyceride level of subjects with metabolic syndrome. Gene . 2015;568(1):81–84. doi:10.1016/j.gene.2015.05.019 25967388
   PubMed Web of Science ®Google Scholar
• Kolla VK , Madhavi G , Reddy BP , et al. Association of tumor necrosis factor alpha, interferon gamma and interleukin 10 gene polymorphisms with peripheral neuropathy in South Indian patients with type 2 diabetes. Cytokine . 2009;47(3):173–177. doi:10.1016/j.cyto.2009.06.007 19608431
   PubMed Web of Science ®Google Scholar
• Elsaid A , Helaly MA , Hatata E-SZ , et al. TNF-α-308 and INF-γ+ 874 gene polymorphisms in relation to susceptibility and severity of T2DM among Egyptian cases. Eur J Gen Med . 2012;9(3). doi:10.29333/ejgm/82455
   Google Scholar
• Shiau MY , Wu CY , Huang CN , et al. TNF‐α polymorphisms and type 2 diabetes mellitus in Taiwanese patients. Tissue Antigens . 2003;61(5):393–397. doi:10.1034/j.1399-0039.2003.00059.x 12753658
   PubMedGoogle Scholar
• Brownlee M . Biochemistry and molecular cell biology of diabetic complications. Nature . 2001;414(6865):813. doi:10.1038/414813a 11742414
   PubMed Web of Science ®Google Scholar
• Laddha NC , Dwivedi M , Begum R . Increased Tumor Necrosis Factor (TNF)-alpha and its promoter polymorphisms correlate with disease progression and higher susceptibility towards vitiligo. PLoS One . 2012;7(12):e52298. doi:10.1371/journal.pone.0052298 23284977
   PubMed Web of Science ®Google Scholar
• Niu T , Qin ZS , Xu X , Liu JS . Bayesian haplotype inference for multiple linked single-nucleotide polymorphisms. Am J Hum Genet . 2002;70(1):157–169. doi:10.1086/338446 11741196
   PubMed Web of Science ®Google Scholar
• Stram DO . Multi-SNP haplotype analysis methods for association analysis. Methods Mol Biol . 2017;1666:485–504.28980261
   PubMedGoogle Scholar