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Original Research

Gene expression profiles and protein–protein interaction network analysis in AIDS patients with HIV-associated encephalitis and dementia

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Pages 265-276 | Published online: 18 Nov 2015

References

  • BerheTMelkamuYAmareAThe pattern and predictors of mortality of HIV/AIDS patients with neurologic manifestation in Ethiopia: a retrospective studyAIDS Res Ther201291122490062
  • LumaHNTchaleuBCTemfackEHIV-associated central nervous system disease in patients admitted at the Douala General Hospital between 2004 and 2009: a retrospective studyAIDS Res Treat2013201370981023533732
  • HeatonRKFranklinDREllisRJHIV-associated neurocognitive disorders before and during the era of combination antiretroviral therapy: differences in rates, nature, and predictorsJ Neurovirol201117131621174240
  • ValcourVPaulRChiaoSWendelkenLAMillerBScreening for cognitive impairment in human immunodeficiency virusClin Infect Dis201153883684221921226
  • MasliahEDeTeresaRMMalloryMEHansenLAChanges in pathological findings at autopsy in AIDS cases for the last 15 yearsAIDS2000141697410714569
  • BellJEThe neuropathology of adult HIV infectionRev Neurol (Paris)1998154128168299932303
  • BisselSJWangGBonneh-BarkayDSystemic and brain macrophage infections in relation to the development of simian immunodeficiency virus encephalitisJ Virol200882105031504218337567
  • KaufmannWECerebrocortical changes in AIDSLab Invest19926632612641538582
  • de VriesHEKuiperJde BoerAJVan BerkelTJBreimerDDThe blood–brain barrier in neuroinflammatory diseasesPharmacol Rev19974921431559228664
  • VallatAVDe GirolamiUHeJLocalization of HIV-1 co-receptors CCR5 and CXCR4 in the brain of children with AIDSAm J Pathol199815211671789422534
  • ZhengJGhorpadeANiemannDLymphotropic virions affect chemokine receptor-mediated neural signaling and apoptosis: implications for human immunodeficiency virus type 1-associated dementiaJ Virol199973108256826710482576
  • GaleyDBeckerKHaugheyNDifferential transcriptional regulation by human immunodeficiency virus type 1 and gp120 in human astrocytesJ Neurovirol20039335837112775419
  • MinagarAShapshakPDuranEMHIV-associated dementia, Alzheimer’s disease, multiple sclerosis, and schizophrenia: gene expression reviewJ Neurol Sci20042241–231715450765
  • KoetheJRDeeKBianACirculating interleukin-6, soluble CD14, and other inflammation biomarker levels differ between obese and nonobese HIV-infected adults on antiretroviral therapyAIDS Res Hum Retroviruses20132971019102523469772
  • EdgarRDomrachevMLashAEGene expression omnibus: NCBI gene expression and hybridization array data repositoryNucleic Acids Res200230120721011752295
  • IrizarryRAHobbsBCollinFExploration, normalization, and summaries of high density oligonucleotide array probe level dataBiostatistics20034224926412925520
  • GentlemanRCCareyVJBatesDMBioconductor: open software development for computational biology and bioinformaticsGenome Biol2004510R8015461798
  • SmythGKLinear models and empirical Bayes methods for assessing differential expression in microarray experimentsStat Appl Genet Mol Biol20043 Article3
  • WettenhallJMSmythGKlimmaGUI: a graphical user interface for linear modeling of microarray dataBioinformatics200420183705370615297296
  • OgataHGotoSFujibuchiWKanehisaMComputation with the KEGG pathway databaseBiosystems1998471–21191289715755
  • KanehisaMThe KEGG databaseNovartis Found Symp20022479110112539951
  • DennisGJrShermanBTHosackDADAVID: database for annotation, visualization, and integrated discoveryGenome Biol200345P312734009
  • ShannonPMarkielAOzierOCytoscape: a software environment for integrated models of biomolecular interaction networksGenome Res2003132498250414597658
  • O’DriscollPMerenyiEKarmonikCGrossmanRSOM and MCODE methods of defining functional clusters in MRI of the brainConf Proc IEEE Eng Med Biol Soc201473473725570063
  • HulseggeIKommadathASmitsMAGlobaltest and GOEAST: two different approaches for Gene Ontology analysisBMC Proc20093Suppl 4S1019615110
  • HuangWShermanBTLempickiRASystematic and integrative analysis of large gene lists using DAVID bioinformatics resourcesNat Protoc20094445719131956
  • CappellMSYaoFChoKCColonic adenocarcinoma associated with the acquired immune deficiency syndromeCancer19886236166193390798
  • MonfardiniSVaccherEPizzocaroGUnusual malignant tumours in 49 patients with HIV infectionAIDS1989374494522504249
  • RavalliSChabonABKhanAGastrointestinal neoplasia in young HIV antibody-positive patientsAm J Clin Pathol19899144584612929501
  • FordRMMcMahonMMWehbiMAHIV/AIDS and colorectal cancer: a review in the era of antiretroviralsGastroenterol Hepatol (N Y)20084427427821960912
  • SharanRIdekerTModeling cellular machinery through biological network comparisonNat Biotech200624427433
  • ZhangFZangTWilsonSJJohnsonMCBieniaszPDClathrin facilitates the morphogenesis of retrovirus particlesPLoS Pathog201176e100211921738476
  • LowJSFassatiAHsp90: a chaperone for HIV-1Parasitology201414191192120225004926
  • ImpensFTimmermanEStaesAA catalogue of putative HIV-1 protease host cell substratesBiol Chem2012393991593122944692
  • RoeschFMezianeOKulaAHyperthermia stimulates HIV-1 replicationPLoS Pathog201287e100279222807676
  • BarillariGGendelmanRGalloRCEnsoliBThe Tat protein of human immunodeficiency virus type 1, a growth factor for AIDS Kaposi sarcoma and cytokine-activated vascular cells, induces adhesion of the same cell types by using integrin receptors recognizing the RGD amino acid sequenceProc Natl Acad Sci U S A19939017794179457690138
  • TorreDPuglieseAFerrarioGMariettiGFornoBZeroliCInteraction of human plasma fibronectin with viral proteins of human immunodeficiency virusFEMS Immunol Med Microbiol1994821271318173552
  • BozziniSFalconeVConaldiPGHeparin-binding domain of human fibronectin binds HIV-1 gp120/160 and reduces virus infectivityJ Med Virol199854144539443108
  • PuglieseATorreDBaccinoFMCandida albicans and HIV-1 infectionCell Biochem Funct200018423524111180285
  • ShoemanRLHartigRHausesCTraubPOrganization of focal adhesion plaques is disrupted by action of the HIV-1 proteaseCell Biol Int200226652953912119179
  • ZhangXYuJKuzontkoskiPMZhuWLiDyGroopmanJESlit2/Robo4 signaling modulates HIV-1 gp120-induced lymphatic hyperpermeabilityPLoS Pathog201281e100246122241990
  • WuZCavallaroUMarchisioPCSoriaMRMaierJAFibronectin modulates the effects of HIV-1 Tat on the growth of murine Kaposi’s sarcoma-like cells through the down-regulation of tyrosine phosphorylationAm J Pathol19981526159916059626063
  • PetitoCKTorres-MunozJEZielgerFMcCarthyMBrain CD8+ and cytotoxic T lymphocytes are associated with, and may be specific for, human immunodeficiency virus type 1 encephalitis in patients with acquired immunodeficiency syndromeJ Neurovirol200612427228316966218
  • HohashiNHayashiTFusakiNThe protein tyrosine kinase Fyn activates transcription from the HIV promoter via activation of NF kappa B-like DNA-binding proteinsInt Immunol1995711185118598580083
  • GurerCBerthouxLLubanJCovalent modification of human immunodeficiency virus type 1 p6 by SUMO-1J Virol200579291091715613319
  • EspositoVManenteLPernaARole of NEDD8 in HIV-associated lipodystrophyDifferentiation200977214815319281774